BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.11 - phase: 0
(363 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11478 similar to GB|AAC14276.1|3065729|AF055900 clathrin light... 39 0.001
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 32 0.039
BP043648 32 0.13
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot... 32 0.13
TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-r... 32 0.22
AV410198 32 0.22
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 32 0.22
TC19121 similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolo... 31 0.29
AV409159 31 0.29
TC11492 31 0.37
TC17503 31 0.37
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact... 31 0.37
AV420351 30 0.49
TC17863 homologue to PIR|S44027|S44027 thioredoxin-disulfide red... 30 0.49
BI417928 30 0.64
TC17096 similar to PIR|C53394|C53394 ribosomal protein L12.C pre... 30 0.64
TC8180 similar to UP|EXTN_TOBAC (P13983) Extensin precursor (Cel... 30 0.64
AV412772 30 0.64
TC15294 homologue to UP|RSP4_SOYBN (O22518) 40S ribosomal protei... 30 0.64
TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, part... 30 0.83
>TC11478 similar to GB|AAC14276.1|3065729|AF055900 clathrin light chain
{Drosophila melanogaster;} , partial (7%)
Length = 663
Score = 38.9 bits (89), Expect = 0.001
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 338 ILPSHLRATKQQSPANIENSEEEIGK 363
+LPSHL T+Q+SPA IE+S EE+GK
Sbjct: 3 LLPSHLWTTEQKSPAKIEDSGEEVGK 80
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 31.6 bits (70), Expect(2) = 0.039
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 3 KRKRSPIKSLPPPLPPSTPPTPH 25
+ K ++ PP LPPSTPP PH
Sbjct: 106 RHKGPTLRRQPPCLPPSTPPPPH 174
Score = 21.2 bits (43), Expect(2) = 0.039
Identities = 14/44 (31%), Positives = 19/44 (42%)
Frame = +3
Query: 18 PSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQT 61
P+TPP+P + T+ S P N T P PT +T
Sbjct: 282 PTTPPSPSPPSNSPTSTSPPPQPSPPNSTSPS---PPQTPTRKT 404
>BP043648
Length = 403
Score = 32.3 bits (72), Expect = 0.13
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 2 SKRKRSPIKSLPPPLPP-STPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQ 60
S R + +SLPPP PP T P+ T + +T S+S L+ +R+ LS T PTG
Sbjct: 175 SSRNSAAARSLPPPPPPHPTSPSMTTPSPETTATSRS-----LSFSRRLLS---TSPTGP 330
Query: 61 TFR 63
R
Sbjct: 331 ALR 339
>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 577
Score = 32.3 bits (72), Expect = 0.13
Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 8/43 (18%)
Frame = +3
Query: 1 MSKRKRSPIKSL--------PPPLPPSTPPTPHTQTRHSTNLS 35
+ +R+RSPI + PPPLPP PP P+ T T LS
Sbjct: 126 LHRRRRSPI*AAINHTPNPPPPPLPPLPPPPPNPMTLILTPLS 254
>TC17328 weakly similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol
4-reductase-like (Cinnamoyl-CoA reductase-like
protein), partial (21%)
Length = 479
Score = 31.6 bits (70), Expect = 0.22
Identities = 14/27 (51%), Positives = 15/27 (54%)
Frame = +1
Query: 11 SLPPPLPPSTPPTPHTQTRHSTNLSKS 37
S+PPP PP TPPT TR S S
Sbjct: 7 SMPPPSPPPTPPTSSPSTRKPIPASPS 87
>AV410198
Length = 337
Score = 31.6 bits (70), Expect = 0.22
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAW 40
PPP P PP P + HS S+S AW
Sbjct: 248 PPPPLPIPPPPPEKSSSHSPTTSRSIAW 331
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 31.6 bits (70), Expect = 0.22
Identities = 17/42 (40%), Positives = 21/42 (49%)
Frame = +1
Query: 2 SKRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPL 43
S R+P S PP P STPPT H + +KS + PL
Sbjct: 133 STAARTPPSSAPPATPKSTPPTSSPPAIHVSLSAKSASKPPL 258
Score = 29.3 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +1
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHS 31
P ++PP LP STPP P + T ++
Sbjct: 337 PATNVPPSLPSSTPPPPTSSTTNT 408
>TC19121 similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolog (NPC
derived proline-rich protein 1) (NDPP-1), partial (3%)
Length = 414
Score = 31.2 bits (69), Expect = 0.29
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 8 PIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIP 42
P SL P PP+ PP +TQT + + S+S P
Sbjct: 290 PQSSLDPKAPPAPPPDSYTQTAQTLSTSRSAYQTP 394
>AV409159
Length = 422
Score = 31.2 bits (69), Expect = 0.29
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +2
Query: 2 SKRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLP 53
S + +K+L PP PP P P TR S L K+ + LN TR +P
Sbjct: 17 SNHRH*SLKTLTPPPPPPPQPPPSMATRRSAPLLKN-IFSRLNPTRSVTYMP 169
>TC11492
Length = 789
Score = 30.8 bits (68), Expect = 0.37
Identities = 19/43 (44%), Positives = 22/43 (50%), Gaps = 9/43 (20%)
Frame = -2
Query: 7 SPIKSLPPPLPPSTPPTPHTQT----RHSTNL-----SKSRAW 40
SP S P P PP +PPT TQT R+ T L + SR W
Sbjct: 206 SPSTSSPSPSPPRSPPTAGTQTPGHGRNRTRLEVLQGTPSRLW 78
>TC17503
Length = 564
Score = 30.8 bits (68), Expect = 0.37
Identities = 19/43 (44%), Positives = 22/43 (50%), Gaps = 9/43 (20%)
Frame = -1
Query: 7 SPIKSLPPPLPPSTPPTPHTQT----RHSTNL-----SKSRAW 40
SP S P P PP +PPT TQT R+ T L + SR W
Sbjct: 216 SPSTSSPSPSPPRSPPTAGTQTPGHGRNRTRLAVLQGTPSRLW 88
>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
(PRP18 homolog) (hPRP18), partial (8%)
Length = 563
Score = 30.8 bits (68), Expect = 0.37
Identities = 14/27 (51%), Positives = 15/27 (54%)
Frame = +1
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRA 39
PPP PP PPT T T S+ KS A
Sbjct: 244 PPPTPPPHPPTSRTSTTSSSLNKKSSA 324
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSR 38
PPP PP+ PP P T +T+ S ++
Sbjct: 235 PPPPPPTPPPHPPTSRTSTTSSSLNK 312
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKS 37
PPP PP P PH T ++ S S
Sbjct: 229 PPPPPPPPTPPPHPPTSRTSTTSSS 303
>AV420351
Length = 188
Score = 30.4 bits (67), Expect = 0.49
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIP 42
PPP PP PP P++ N S +R +P
Sbjct: 69 PPPPPPPQPPQPYSAPSSPLNRSTTRTLLP 158
>TC17863 homologue to PIR|S44027|S44027 thioredoxin-disulfide reductase 2
[validated] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (19%)
Length = 334
Score = 30.4 bits (67), Expect = 0.49
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = +3
Query: 2 SKRKRSPIKSLPPPLPP-STPPTPHTQTRHSTNLSKSRAWIP 42
SK + +++PPP PP STPP P S+N S S+A P
Sbjct: 129 SKPSSASSEAVPPPTPPPSTPPAP------SSNQSSSKAGWP 236
>BI417928
Length = 509
Score = 30.0 bits (66), Expect = 0.64
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 13 PPPLPPSTPPTPHTQTRHSTNLSKSRAWIP 42
PP L P PP P + T LS S W P
Sbjct: 188 PPTLSPPPPPPPRSSTPPPLRLSSSSPWPP 277
>TC17096 similar to PIR|C53394|C53394 ribosomal protein L12.C precursor,
chloroplast - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (74%)
Length = 677
Score = 30.0 bits (66), Expect = 0.64
Identities = 18/55 (32%), Positives = 25/55 (44%)
Frame = +1
Query: 12 LPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPTGQTFRWKN 66
LP PP PP PH + + ++ R P T Q+ P PTGQ R ++
Sbjct: 88 LPNTPPPHHPPPPHLRRLRESREARRRHLQPHTGTSQD---PRRLPTGQARRLRS 243
>TC8180 similar to UP|EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein), partial (3%)
Length = 575
Score = 30.0 bits (66), Expect = 0.64
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -1
Query: 1 MSKRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSR 38
+ +++++P + PP PS+PP P + + HST L+ S+
Sbjct: 197 LPEQQKAPAPTATPPGTPSSPPPP-SSSLHSTPLTNSK 87
>AV412772
Length = 397
Score = 30.0 bits (66), Expect = 0.64
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 4 RKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLSKSRAWIPL 43
R++S + L P +T P P TRH+ L+++ AW P+
Sbjct: 223 RQQSLRRLLKSPPCQATTPRPLIHTRHTLLLNRTTAWAPI 342
>TC15294 homologue to UP|RSP4_SOYBN (O22518) 40S ribosomal protein SA
(p40), partial (46%)
Length = 478
Score = 30.0 bits (66), Expect = 0.64
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +2
Query: 4 RKRSPIKSLPPPL-----PPSTPPTPHTQTRHSTNLSKSRAWIPLNITRQELSLPLTFPT 58
R SP S PL PP TPP + H N + S W P +I+ P
Sbjct: 2 RPHSPSLSRCDPLG*TWRPPPTPPQRRRASSHRRNPTSS*CWQPTSISA---------PR 154
Query: 59 GQTFRWKNTAPSQYTGV 75
RW T+ S T V
Sbjct: 155TAISRWSATSSSAATVV 205
>TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, partial (49%)
Length = 701
Score = 29.6 bits (65), Expect = 0.83
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 2/79 (2%)
Frame = -2
Query: 2 SKRKRSPIKSLPPPLPPSTPPTPHTQTRHSTNLS-KSRA-WIPLNITRQELSLPLTFPTG 59
++R+R P ++ PP + PPTP T + N S RA IP TR+ L P
Sbjct: 361 TRRRR*PSRTPPPAASSAAPPTPSTPCAPAPNGSYPGRAEGIPPPRTRRSAHPGLVPPRS 182
Query: 60 QTFRWKNTAPSQYTGVVGS 78
R + T +VGS
Sbjct: 181 AAARSRVTPAPSRRWIVGS 125
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,112,019
Number of Sequences: 28460
Number of extensions: 118631
Number of successful extensions: 2847
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2588
length of query: 363
length of database: 4,897,600
effective HSP length: 91
effective length of query: 272
effective length of database: 2,307,740
effective search space: 627705280
effective search space used: 627705280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC140916.11