BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.1 - phase: 0
(108 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB827384 69 2e-13
AV415712 64 4e-12
TC12957 similar to UP|Q9FRY9 (Q9FRY9) Response regulator 6, part... 55 2e-09
TC18790 31 0.036
BP052495 29 0.14
TC20246 28 0.30
BP033587 28 0.30
AV770969 27 0.39
TC11842 similar to UP|Q8SX80 (Q8SX80) LD21711p, partial (3%) 25 1.5
CB828977 25 2.0
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 25 2.0
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 25 2.0
TC17581 similar to GB|AAP81802.1|32441254|BT009684 At1g74380 {Ar... 25 2.0
AV427444 25 2.0
TC17253 similar to UP|Q8SKU2 (Q8SKU2) Tic62 protein precursor, p... 25 2.6
TC11912 25 2.6
AV776038 24 3.3
TC10426 similar to PIR|S22384|S22384 dihydrolipoamide dehydrogen... 24 3.3
BP085186 24 3.3
TC17970 24 4.4
>CB827384
Length = 548
Score = 68.6 bits (166), Expect = 2e-13
Identities = 33/51 (64%), Positives = 43/51 (83%)
Frame = +2
Query: 20 EHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISS 70
+ HVLAVDDS++DR ++ERLL+ SSCKVT VDSG +AL+YLGL+ +E SS
Sbjct: 119 DELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSS 271
>AV415712
Length = 353
Score = 63.9 bits (154), Expect = 4e-12
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +2
Query: 12 LQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
L P++ E HVLAVDDS+IDR ++ERLL+ SSCKVT VDSG +AL++LGL
Sbjct: 89 LSPEHAAAE-VHVLAVDDSLIDRKVIERLLKISSCKVTAVDSGIRALQFLGL 241
>TC12957 similar to UP|Q9FRY9 (Q9FRY9) Response regulator 6, partial (27%)
Length = 493
Score = 55.1 bits (131), Expect = 2e-09
Identities = 34/74 (45%), Positives = 40/74 (53%), Gaps = 16/74 (21%)
Frame = +2
Query: 18 KQEHFHVLAVDDSVIDRMLLERLLRDSS----------------CKVTCVDSGDKALKYL 61
K+ FHVLAVDDS+IDRML+ERLL+ SS VT VDS KAL +L
Sbjct: 176 KETQFHVLAVDDSLIDRMLIERLLKTSSFHGGILIADILGMCVEFTVTAVDSASKALNFL 355
Query: 62 GLNIDEISSTKSSI 75
GL D S +
Sbjct: 356 GLVEDMASEIHQDV 397
>TC18790
Length = 555
Score = 30.8 bits (68), Expect = 0.036
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 76 LESSSPSLPQPLQLQEVIILIFFFLILKSFQLR 108
L SSS +PQ L V I +FFF I+K+ Q R
Sbjct: 305 LYSSSSEIPQKRVLDYVPIRVFFFTIVKALQFR 207
>BP052495
Length = 524
Score = 28.9 bits (63), Expect = 0.14
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -3
Query: 69 SSTKSSILESSSPSLPQPLQLQEVIILIFFFLILKSFQLR 108
SST SS L++S P + L L +I +FFFLI+ +F L+
Sbjct: 123 SSTSSSPLKASGPKVNY*L-LPRLIRFLFFFLIIFTFVLQ 7
>TC20246
Length = 630
Score = 27.7 bits (60), Expect = 0.30
Identities = 16/45 (35%), Positives = 27/45 (59%)
Frame = +3
Query: 45 SCKVTCVDSGDKALKYLGLNIDEISSTKSSILESSSPSLPQPLQL 89
S + ++ K L+ G+N++ SS+ SS+ SPSLPQ L++
Sbjct: 18 SSSTSSSNTAAKRLRLFGVNMECASSSSSSL---PSPSLPQNLRV 143
>BP033587
Length = 424
Score = 27.7 bits (60), Expect = 0.30
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 59 KYLGLNIDEISSTKSSILESSSPSLPQPLQLQEVIILIFFFLIL 102
+Y+ D + + +L+ SLP P L+EVI+L+FF I+
Sbjct: 294 QYMSTRADVLPAAYIRLLKQLQDSLP-PRPLEEVILLMFFL*IM 422
>AV770969
Length = 371
Score = 27.3 bits (59), Expect = 0.39
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = -3
Query: 75 ILESSSPSLPQPLQLQEVIILIFFFLILKSFQ 106
+L S SPSLP P+ L I L+ + + FQ
Sbjct: 123 LLHSQSPSLPSPILLLLSICLVLVCVCVNGFQ 28
>TC11842 similar to UP|Q8SX80 (Q8SX80) LD21711p, partial (3%)
Length = 557
Score = 25.4 bits (54), Expect = 1.5
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = -3
Query: 64 NIDEISSTKSSILESSSPSLPQPLQLQEVIILIFFF 99
N SS+ SS SSS SL Q + + + FFF
Sbjct: 465 NSSSSSSSSSSSSSSSSESLKQGITIHNSLFPFFFF 358
>CB828977
Length = 528
Score = 25.0 bits (53), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 76 LESSSPSLPQPLQLQEVIILIFFFLILKSFQLR 108
LE SSP+ +QLQ +I+L L+ K LR
Sbjct: 254 LELSSPNYQHLVQLQLLILLCKMLLLCKMLLLR 352
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 25.0 bits (53), Expect = 2.0
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 22 FHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGD--KALKYLG 62
FH+L ++ S D ++ + +C+ TC+D G L Y+G
Sbjct: 1295 FHLLEIEFSNWDH*VVHQGEGQKTCEQTCLDRGSCLSGLVYIG 1423
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 25.0 bits (53), Expect = 2.0
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 68 ISSTKSSILESSSPSLP 84
ISST SS L S SPSLP
Sbjct: 401 ISSTTSSHLPSPSPSLP 451
>TC17581 similar to GB|AAP81802.1|32441254|BT009684 At1g74380 {Arabidopsis
thaliana;}, partial (35%)
Length = 804
Score = 25.0 bits (53), Expect = 2.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 76 LESSSPSLPQPLQLQEVII 94
L + P++P+P+QLQ +II
Sbjct: 437 LGAQQPTVPEPIQLQHLII 381
>AV427444
Length = 428
Score = 25.0 bits (53), Expect = 2.0
Identities = 7/22 (31%), Positives = 16/22 (71%)
Frame = +1
Query: 41 LRDSSCKVTCVDSGDKALKYLG 62
+ +++C ++C+D GDK ++G
Sbjct: 109 MTETTCVISCIDQGDKLGGHVG 174
>TC17253 similar to UP|Q8SKU2 (Q8SKU2) Tic62 protein precursor, partial (9%)
Length = 793
Score = 24.6 bits (52), Expect = 2.6
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +3
Query: 7 SRKLQLQPQNLKQEHFHVL 25
+++++ PQN Q+HFH++
Sbjct: 513 NQRMRNMPQNQSQDHFHLI 569
>TC11912
Length = 505
Score = 24.6 bits (52), Expect = 2.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 59 KYLGLNIDEISSTKSSILESSSPSLPQPLQLQEVIILIFFFLIL 102
K L N ISS S L SSS + V++L F L++
Sbjct: 98 KTLASNTTAISSLPPSSLPSSSSQEKVHTSISHVLVLTFLLLLI 229
>AV776038
Length = 340
Score = 24.3 bits (51), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (49%)
Frame = +1
Query: 41 LRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSS 74
+ +SC VTC SG +G + D++ SS
Sbjct: 142 ISQASCFVTCQGSGSVTASSVGWSSDDLGEWHSS 243
>TC10426 similar to PIR|S22384|S22384 dihydrolipoamide dehydrogenase
precursor - garden pea {Pisum sativum;}
, partial (31%)
Length = 512
Score = 24.3 bits (51), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -2
Query: 69 SSTKSSILESSSPSLPQPLQLQEVIILIFFFL 100
++ K L S + QPL+ + I IFFFL
Sbjct: 121 ATEKKEYLSLSDDTTAQPLRRAKFAIAIFFFL 26
>BP085186
Length = 388
Score = 24.3 bits (51), Expect = 3.3
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = +3
Query: 69 SSTKSSILESSSPSLPQPLQLQEVIILIF 97
SS+ SS SSS S P P L +I L F
Sbjct: 219 SSSSSSSSSSSSSSFPSPSALSGLISLPF 305
>TC17970
Length = 542
Score = 23.9 bits (50), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 70 STKSSILESSSPSLPQP 86
ST S++ E +SPSLP P
Sbjct: 240 STSSAVPELTSPSLPPP 290
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,763,669
Number of Sequences: 28460
Number of extensions: 21577
Number of successful extensions: 166
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of query: 108
length of database: 4,897,600
effective HSP length: 84
effective length of query: 24
effective length of database: 2,506,960
effective search space: 60167040
effective search space used: 60167040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)
Medicago: description of AC140916.1