TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140913.5 + phase: 0 /pseudo
         (584 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF177509                                                               70  9e-13
BP030148                                                               49  2e-06
AV766619                                                               38  0.005
TC12996 similar to UP|Q84VQ3 (Q84VQ3) NAF specific protein kinas...    28  5.4
BP039650                                                               28  5.4
TC10608 weakly similar to UP|CAD41394 (CAD41394) OJ000223_09.7 p...    28  5.4

>BF177509 
          Length = 472

 Score = 70.1 bits (170), Expect = 9e-13
 Identities = 43/156 (27%), Positives = 77/156 (48%)
 Frame = +1

Query: 339 WVDNIPKENWTQAYDEGRRWGHMTSNIVESWNFVFKGTRNLPVTPIVQSTYYRLACFFAD 398
           W+  IP   W  AY EG+R+GH+T+NIVES N        LP+  +++    +L  +F +
Sbjct: 19  WIRRIPPRLWATAYFEGQRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNE 198

Query: 399 RAQKGFVRVGSGDLFTEYCQNAIKDDIVKSNTHHVEQFNRERYTFSVREIVNYREGRPMR 458
           R +     +    +     +  + + + ++ T+ V + N   +     E++++ EG  + 
Sbjct: 199 RRE---TSMQWASILVPSAERCVAEALERARTYQVLRANEAEF-----EVISH-EGSNI- 348

Query: 459 TFKVDLRAGWCDCGKFQALHLPCSHVIAACSSFRHD 494
              VD+R   C C  +Q   LPC+H +AA  S R +
Sbjct: 349 ---VDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQN 447


>BP030148 
          Length = 398

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 43/82 (51%)
 Frame = +3

Query: 305 MVGKKLVQLIYALNVPLFDYYRGVIKKANQRALDWVDNIPKENWTQAYDEGRRWGHMTSN 364
           M+   L +  + L V  F+     I++ +Q A  W+  IP   W  AY EG+R+GH+T+N
Sbjct: 147 MLVNLLWEAAHVLTVIEFESKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLTAN 326

Query: 365 IVESWNFVFKGTRNLPVTPIVQ 386
           IVES +        LP+  + +
Sbjct: 327 IVESLDTWILDASGLPIVQMTE 392


>AV766619 
          Length = 412

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 329 IKKANQRALDWVDNIPKENWTQAYDEGRRWGHMTSNIVESWNFVFKGTRNLPVTPIV 385
           +K  +  A +WV     E+W  A+  G R+ H+TSN  + +         LP+T ++
Sbjct: 239 MKGISSEAFNWVMQNEPEHWANAFFNGARYNHLTSNFGQQFYNWMSEAHELPITQMI 409


>TC12996 similar to UP|Q84VQ3 (Q84VQ3) NAF specific protein kinase family,
           partial (17%)
          Length = 523

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = +3

Query: 456 PMRTFKVDLRAGWCDCGKFQALHLPCSHVIAACSSFRHDYTTL 498
           P R FK  L   W  CGK +A+H      I++  + RH +  L
Sbjct: 105 PQRCFKWHLLFTWLRCGKLKAIHWSS---ISSTKNSRHAWKML 224


>BP039650 
          Length = 488

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 527 PYDGPVLCHNPNMRRLKKGRPNSTRIRTEM 556
           P+  P+LCH PN+ + K+ RP + +I  E+
Sbjct: 322 PFPKPLLCHAPNI*K-KQHRPTTIKICNEL 236


>TC10608 weakly similar to UP|CAD41394 (CAD41394) OJ000223_09.7 protein,
           partial (35%)
          Length = 820

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/42 (35%), Positives = 20/42 (46%)
 Frame = +3

Query: 510 SIYNTTFKVVQDKSYWLPYDGPVLCHNPNMRRLKKGRPNSTR 551
           S+YN       ++S W P   P+LC N N+ R     PN  R
Sbjct: 411 SLYNL------NQSLWSPPSHPLLCRNQNLLRKSLLNPNG*R 518


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.339    0.146    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,042,232
Number of Sequences: 28460
Number of extensions: 132920
Number of successful extensions: 1005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of query: 584
length of database: 4,897,600
effective HSP length: 95
effective length of query: 489
effective length of database: 2,193,900
effective search space: 1072817100
effective search space used: 1072817100
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 58 (26.9 bits)