BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.3 - phase: 0
(476 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partia... 29 1.9
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,... 28 2.5
TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protei... 28 3.3
TC14892 similar to UP|Q9Z0W6 (Q9Z0W6) Pax transcription activati... 28 3.3
TC14231 28 4.3
TC18660 27 5.6
TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2... 27 5.6
BP055755 27 7.3
CB826758 27 9.5
TC11869 27 9.5
TC9686 similar to GB|CAA20565.1|3549654|ATT16L1 metal-transporti... 27 9.5
>TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partial (39%)
Length = 751
Score = 28.9 bits (63), Expect = 1.9
Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 11/89 (12%)
Frame = -2
Query: 292 SKPINLATS---------PEFFFYTNAPTGQRKAFMDAWSKVRRKSVRHLGVRSGVAHEA 342
S P++ +TS P + T + Q+KAF + WS V + GV H
Sbjct: 456 SNPLSFSTSSSVVASVPKPNAWILT*SVRFQQKAFPNIWSTVSETPSSTMPTTDGVEHVR 277
Query: 343 YTQWVIDRAEEIGM--PYPAMRYVSSSTP 369
+ + + P+P R SSTP
Sbjct: 276 WFSFSFSFSHAFAFDDPFPRERTRRSSTP 190
>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
(74%)
Length = 1591
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 196 RTLKG-RGYILCCISLLYRWFISHLP 220
R LK RG++ CC + WF+S LP
Sbjct: 42 RVLKSKRGFLCCCCWEFFSWFLSPLP 119
>TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protein, partial
(47%)
Length = 929
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 18/31 (57%)
Frame = -1
Query: 114 DVSNHLITKSHIRGFTSKYLLDQANLSTTRQ 144
+V NH++ ++ +T K +DQ NL T Q
Sbjct: 218 EVENHVVISYQVKSWTRKLTIDQNNLLRTAQ 126
>TC14892 similar to UP|Q9Z0W6 (Q9Z0W6) Pax transcription activation domain
interacting protein PTIP, partial (3%)
Length = 1502
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 411 LDGRDEQKTHENLMLKKELAKARRELEEK 439
L +DEQ TH+NL K ++ RE+ K
Sbjct: 1193 LSPKDEQTTHQNLNFSKHVSHLAREITTK 1107
>TC14231
Length = 803
Score = 27.7 bits (60), Expect = 4.3
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 4/67 (5%)
Frame = -2
Query: 241 PNEVVWLTPAAQV----KEIIMGCGDFLNVPLLGIRGGINYNPELAMRQFGFPMKSKPIN 296
PN +VW PAA K I G G+ ++V L+ I + + +L + F + +
Sbjct: 328 PNPIVWALPAACYL*CHKTISSGVGNEVHVHLISISSNKHISTKLLVESFDHINELWIVQ 149
Query: 297 LATSPEF 303
+S EF
Sbjct: 148 RCSSXEF 128
>TC18660
Length = 893
Score = 27.3 bits (59), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +2
Query: 352 EEIGMPYPAMRYVSSSTPSMPLP 374
E MP P+M ++S +TP + LP
Sbjct: 800 EAFDMPTPSMEWISGTTPHLKLP 868
>TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2 , partial
(15%)
Length = 472
Score = 27.3 bits (59), Expect = 5.6
Identities = 15/51 (29%), Positives = 21/51 (40%)
Frame = +1
Query: 164 LDNFVDMNAIEIFHSKNPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRW 214
L FV + +F P L YH IH L+ +L S+L+ W
Sbjct: 172 LKGFVRCFFLPLFQLITEPPLLQNSEYHRIHFEMLRCSQDVLALFSILWNW 324
>BP055755
Length = 273
Score = 26.9 bits (58), Expect = 7.3
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = -3
Query: 361 MRYVSSSTPS-MPLPLLPATQDMYQEHLAMESREKQVWKARY 401
+++ S S P +P P P+T +QE A +R ++W+ +Y
Sbjct: 271 VKFPSHSNPCPIPPPYDPSTFPSFQEGKAYATRPVEIWEDKY 146
>CB826758
Length = 537
Score = 26.6 bits (57), Expect = 9.5
Identities = 31/146 (21%), Positives = 61/146 (41%)
Frame = +2
Query: 309 APTGQRKAFMDAWSKVRRKSVRHLGVRSGVAHEAYTQWVIDRAEEIGMPYPAMRYVSSST 368
A R A+ + + + R + +R A E+ AEE+ + A + T
Sbjct: 44 AENATRHAYQETFRRGRAEKDAIEAIRRAKAAESLY------AEELNLRKMAEEELE--T 199
Query: 369 PSMPLPLLPATQDMYQEHLAMESREKQVWKARYNQAENLIMTLDGRDEQKTHENLMLKKE 428
L L + D +E L + +K +++ +E ++ L EQK + L +
Sbjct: 200 EKEELENLKSQADKVKEELRLVQDQKSSLESQLASSELMVKEL----EQKIISAVDLLQN 367
Query: 429 LAKARRELEEKDELLMRDSKRARGRR 454
R ELE + + L+R+++ R ++
Sbjct: 368 YKNEREELEVQRDSLLREAEELRKKQ 445
>TC11869
Length = 753
Score = 26.6 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 153 LLIYGLLLFPNLDNFVDMNAIEIFHSKNPVPTLLADTYHAIHD 195
LL+ G + FV +++ H +PTLLA A+ D
Sbjct: 7 LLLPGQSVLVETSGFVIQQTLQVAHMVTVIPTLLASRVAAVSD 135
>TC9686 similar to GB|CAA20565.1|3549654|ATT16L1 metal-transporting P-type
ATPase (fragment) {Arabidopsis thaliana;} , partial (7%)
Length = 714
Score = 26.6 bits (57), Expect = 9.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 80 NLVGLPIAEKAPFTGPGTSLTPLVIAKDLYLKTSDVSNHLITKSHIRGFTSKYLLD 135
N+VG+PIA F GT LTP + + L + V + + K +LD
Sbjct: 48 NIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQILD 215
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,176,698
Number of Sequences: 28460
Number of extensions: 111953
Number of successful extensions: 584
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of query: 476
length of database: 4,897,600
effective HSP length: 94
effective length of query: 382
effective length of database: 2,222,360
effective search space: 848941520
effective search space used: 848941520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140913.3