Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140913.13 + phase: 0 /pseudo
         (676 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU251954                                                               67  9e-12
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01...    36  0.018
BP048490                                                               30  0.97
TC18386 weakly similar to UP|Q9LTQ8 (Q9LTQ8) Gb|AAF00675.1, part...    30  1.3
TC9071 similar to UP|Q9LT85 (Q9LT85) Similarity to receptor prot...    30  1.7
BP048142                                                               30  1.7
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro...    29  2.2
TC18994                                                                29  2.2
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ...    29  2.8
AV413073                                                               29  2.8
AV409118                                                               29  2.8
TC10043 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (10%)     28  6.3
TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, parti...    28  6.3
AV768808                                                               28  6.3
AV775735                                                               28  6.3
BP064999                                                               27  8.2
BP034914                                                               27  8.2
TC19424 similar to UP|O04086 (O04086) Ser/Thr protein kinase iso...    27  8.2

>AU251954 
          Length = 322

 Score = 67.0 bits (162), Expect = 9e-12
 Identities = 38/105 (36%), Positives = 64/105 (60%)
 Frame = +1

Query: 155 IHRKLARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSEK 214
           ++ KL  EL++ K      +KD E+ER  R+L+E++CDE A  I E + EV  LK++S K
Sbjct: 1   VNSKLVNELADAKLFAKRYMKDYEKERKGRELIEEVCDELANEIGEDKAEVEALKRESMK 180

Query: 215 DWVQRADHDRLVLHISESWLDERMQMQLEAAQNGFMDKNSIVDKL 259
              +  + +R +L ++E W +ER+ M+L  A+    +K S ++KL
Sbjct: 181 -LREEMEEERRMLQMAEVWREERVHMKLIDAKIALDEKYSQMNKL 312


>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
           At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
           (33%)
          Length = 902

 Score = 36.2 bits (82), Expect = 0.018
 Identities = 38/134 (28%), Positives = 54/134 (39%), Gaps = 3/134 (2%)
 Frame = +3

Query: 55  KTSTELLKVLNRIWSLEEQHSSNISLIKALKTELDRTRIKVKELLRDRQADRHEVDDLMK 114
           K   +L K   + WS E    S        + E  R R K K+ LRD Q  R +  D   
Sbjct: 510 KRKEKLSKRKTKKWSSESSDFSGDESESRSEEERRRKR-KQKKKLRD-QVSRSDSSDSDS 683

Query: 115 QIAEDKLVRKSKEQDRLHAAVQSVRDEL---EDERKLRKRSESIHRKLARELSEMKSSFT 171
              E   V K K Q + H   +S   +    E+   +RKRS   H K  R     +S  +
Sbjct: 684 SADE---VSKRKRQHKRHRVTKSSGSDFSSDEENSPVRKRSHGKHHKRHRHSESSESDLS 854

Query: 172 SALKDLEQERTRRK 185
           S   D+  +++ RK
Sbjct: 855 S--DDIHHKKSHRK 890


>BP048490 
          Length = 452

 Score = 30.4 bits (67), Expect = 0.97
 Identities = 24/90 (26%), Positives = 41/90 (44%), Gaps = 5/90 (5%)
 Frame = +3

Query: 271 QNSRSAENQVIRDRRNSLESVPLNDAVSAPQAM-----GDDDDDDSVGSDSHCFELNKPS 325
           + S S++++         +S P    V+ P A+      D DD+DS  SDS   E+ K  
Sbjct: 9   EKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDS---EVKKDK 179

Query: 326 HMGAKVHKEEILDKNLDETSKSNVKKKKSV 355
               +    E  D+  ++++K+  KK K V
Sbjct: 180 MDVDESDSSEDSDEEDEKSTKTPQKKVKDV 269


>TC18386 weakly similar to UP|Q9LTQ8 (Q9LTQ8) Gb|AAF00675.1, partial (7%)
          Length = 749

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +1

Query: 486 GSKDNTLKAKLLEARSKGQRSRLR 509
           G+  N+LKAKLLEAR + QR ++R
Sbjct: 37  GALKNSLKAKLLEARLESQRVQIR 108


>TC9071 similar to UP|Q9LT85 (Q9LT85) Similarity to receptor protein
           kinase, partial (15%)
          Length = 872

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 14/47 (29%), Positives = 29/47 (60%)
 Frame = -3

Query: 116 IAEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRKLARE 162
           + ++  ++   +Q R + AV +V  ++++++ L    E+IHRKLA E
Sbjct: 798 VVDENDIQVEVKQLRRNRAVVAVEPDIQEDQLLGAELENIHRKLAGE 658


>BP048142 
          Length = 529

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 120 KLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRK--LARELSEMK----SSFTSA 173
           + V K KE+D L   +     + E + K RK++  +HRK  L  E  EMK          
Sbjct: 264 RCVSKEKEEDVLLEGMPDHYYDDEWQAKQRKKTRELHRKRRLEEEEEEMKIDEYREIGMR 443

Query: 174 LKDLEQERTRRKLLEDLCDEFARGINEYEQ 203
           LK   +E  R+     L   F R   E E+
Sbjct: 444 LKGYPEEDVRK--ARKLVSSFIRAAEEVEE 527


>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
           partial (10%)
          Length = 879

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = -1

Query: 250 MDKNSIVDKLSLEIE-----TFIKAKQNSRSAENQVIRDRRNSLESVPLND 295
           + KN ++  L   +E     +FI+ ++N  + EN ++ D  N LESVPL++
Sbjct: 819 LQKNELILNLGKRVEGVWTWSFIR-RRNPSTRENLLVADLCNLLESVPLSE 670


>TC18994 
          Length = 514

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +1

Query: 110 DDLMKQIAEDKLVRKSKEQDRLHAA-------VQSVRDELEDERKLRKRSESIHRKLARE 162
           D     + E+   +  +E+D L A        ++ +  ELE+ RK+     +    L  E
Sbjct: 124 DSFANGVEEESTSKLERERDELVAENVAKKEQIKKLTAELEESRKMTDVIAARASDLETE 303

Query: 163 LSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSEKD 215
           LS ++    S +   E  R +   L     +    I   E+EV  LK+  E++
Sbjct: 304 LSRLQHDMGSEMSAGEDARAKVADLTKAVGDKESRIGVKEKEVEGLKKVKEEN 462


>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
          Length = 1127

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 303 MGDDDDDDSVGSDSHCFELNKPSHMGAKVHKEEILDKNLDETSKSNVKKKKSVPGEGF 360
           MGDD  DD  GSD    E++KP        +E +        S++  +K ++ P   F
Sbjct: 633 MGDDAMDDFEGSDDEEQEVSKPGEASKPAEQEAV-----KSASEATTEKAEAAPST*F 791


>AV413073 
          Length = 403

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (61%)
 Frame = +1

Query: 12  HALQPLSPASYGSSMEMTPYNPAATPNSS 40
           H+L P+ P+S  + +  TP NPA TP  S
Sbjct: 115 HSLSPIHPSSCPTLIGDTPPNPATTPPPS 201


>AV409118 
          Length = 360

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (61%)
 Frame = +2

Query: 12 HALQPLSPASYGSSMEMTPYNPAATPNSS 40
          H+L P+ P+S  + +  TP NPA TP  S
Sbjct: 26 HSLSPIHPSSCPTLIGDTPPNPATTPPPS 112


>TC10043 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (10%)
          Length = 424

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 20/32 (61%)
 Frame = +3

Query: 305 DDDDDDSVGSDSHCFELNKPSHMGAKVHKEEI 336
           +DDDD    S S  FEL+  S +G + ++EE+
Sbjct: 159 EDDDDAESCSSSDLFELDNLSAIGIERYREEL 254


>TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, partial (80%)
          Length = 1644

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 448 HNNYGEASCSNAGWRNQASPVRQWMASLDISEASKVHSGSK 488
           HN++ + SC++ GWR       QW  S    +  K +S  K
Sbjct: 147 HNSHNQGSCASCGWRKWRC---QWGGSGQQGKREKRNSSGK 260


>AV768808 
          Length = 537

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 23  GSSMEMTPYNPAATPNSSLDFKGRIGEPHYSLKTSTELLKV 63
           GSS    P+ P  +  S   F G  G P+Y   T +   KV
Sbjct: 531 GSSARRGPFTPTKSECSFSFFSGYAGHPNYMANTESSKAKV 409


>AV775735 
          Length = 381

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 294 NDAVSAPQAMGDDDDDDSVGSDSHC 318
           +D V++P++  DD+DDD     +HC
Sbjct: 300 SDPVTSPKSHDDDEDDDEDDE*NHC 226


>BP064999 
          Length = 547

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 350 KKKKSVPGEGFKNHIPSNSNKKSQSVDA 377
           KK+ SVP E      P   NKKS+++DA
Sbjct: 68  KKRNSVPEEENATDSPKPLNKKSKNIDA 151


>BP034914 
          Length = 544

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = +3

Query: 75  SSNISLIKALKTELDRTRIKVKELLRDRQADRHEVDDLMKQIAEDKLVRKSKEQDRL--- 131
           SS+ S      ++ DR+  + +E  R R++D     +       +K  RK +++DR    
Sbjct: 81  SSSSSTASDSDSDSDRSSRRRREKERRRRSDGGSKRERESSRRREK--RKKRDRDRKKTK 254

Query: 132 -HAAVQSVRDELEDERKLRKRSESIHRKLARELSEMKSSFTSALKDLE 178
            H          EDE KLR +  S+ R+L  E   + +     L+ ++
Sbjct: 255 RHRHSDDESHSSEDEDKLRVQPLSVVRELMTEFPNVGNDLKQLLQMID 398


>TC19424 similar to UP|O04086 (O04086) Ser/Thr protein kinase isolog,
           46094-44217, partial (12%)
          Length = 592

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 19/71 (26%), Positives = 40/71 (55%), Gaps = 1/71 (1%)
 Frame = +2

Query: 589 SICDQSTQKGYSSLLSFTV-TDINSTVTKLMALGAELDGPIKYEVHGKVLSSNHAMQCYY 647
           +I D +++ G S+ L+    +D++ T    + L A L   +K  +     ++NH+++C+Y
Sbjct: 5   NISDWTSKLGQSTPLNTACRSDLSDTSLCDLCLNAVLQ--VKQTLVSIDGNANHSLECFY 178

Query: 648 FWKLFTALIIS 658
           F  L+ A I++
Sbjct: 179 FAILYAAGIVN 211


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,804
Number of Sequences: 28460
Number of extensions: 128206
Number of successful extensions: 828
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of query: 676
length of database: 4,897,600
effective HSP length: 96
effective length of query: 580
effective length of database: 2,165,440
effective search space: 1255955200
effective search space used: 1255955200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)


Medicago: description of AC140913.13