
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.13 + phase: 0 /pseudo
(676 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU251954 67 9e-12
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 36 0.018
BP048490 30 0.97
TC18386 weakly similar to UP|Q9LTQ8 (Q9LTQ8) Gb|AAF00675.1, part... 30 1.3
TC9071 similar to UP|Q9LT85 (Q9LT85) Similarity to receptor prot... 30 1.7
BP048142 30 1.7
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro... 29 2.2
TC18994 29 2.2
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ... 29 2.8
AV413073 29 2.8
AV409118 29 2.8
TC10043 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (10%) 28 6.3
TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, parti... 28 6.3
AV768808 28 6.3
AV775735 28 6.3
BP064999 27 8.2
BP034914 27 8.2
TC19424 similar to UP|O04086 (O04086) Ser/Thr protein kinase iso... 27 8.2
>AU251954
Length = 322
Score = 67.0 bits (162), Expect = 9e-12
Identities = 38/105 (36%), Positives = 64/105 (60%)
Frame = +1
Query: 155 IHRKLARELSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSEK 214
++ KL EL++ K +KD E+ER R+L+E++CDE A I E + EV LK++S K
Sbjct: 1 VNSKLVNELADAKLFAKRYMKDYEKERKGRELIEEVCDELANEIGEDKAEVEALKRESMK 180
Query: 215 DWVQRADHDRLVLHISESWLDERMQMQLEAAQNGFMDKNSIVDKL 259
+ + +R +L ++E W +ER+ M+L A+ +K S ++KL
Sbjct: 181 -LREEMEEERRMLQMAEVWREERVHMKLIDAKIALDEKYSQMNKL 312
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 36.2 bits (82), Expect = 0.018
Identities = 38/134 (28%), Positives = 54/134 (39%), Gaps = 3/134 (2%)
Frame = +3
Query: 55 KTSTELLKVLNRIWSLEEQHSSNISLIKALKTELDRTRIKVKELLRDRQADRHEVDDLMK 114
K +L K + WS E S + E R R K K+ LRD Q R + D
Sbjct: 510 KRKEKLSKRKTKKWSSESSDFSGDESESRSEEERRRKR-KQKKKLRD-QVSRSDSSDSDS 683
Query: 115 QIAEDKLVRKSKEQDRLHAAVQSVRDEL---EDERKLRKRSESIHRKLARELSEMKSSFT 171
E V K K Q + H +S + E+ +RKRS H K R +S +
Sbjct: 684 SADE---VSKRKRQHKRHRVTKSSGSDFSSDEENSPVRKRSHGKHHKRHRHSESSESDLS 854
Query: 172 SALKDLEQERTRRK 185
S D+ +++ RK
Sbjct: 855 S--DDIHHKKSHRK 890
>BP048490
Length = 452
Score = 30.4 bits (67), Expect = 0.97
Identities = 24/90 (26%), Positives = 41/90 (44%), Gaps = 5/90 (5%)
Frame = +3
Query: 271 QNSRSAENQVIRDRRNSLESVPLNDAVSAPQAM-----GDDDDDDSVGSDSHCFELNKPS 325
+ S S++++ +S P V+ P A+ D DD+DS SDS E+ K
Sbjct: 9 EKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDS---EVKKDK 179
Query: 326 HMGAKVHKEEILDKNLDETSKSNVKKKKSV 355
+ E D+ ++++K+ KK K V
Sbjct: 180 MDVDESDSSEDSDEEDEKSTKTPQKKVKDV 269
>TC18386 weakly similar to UP|Q9LTQ8 (Q9LTQ8) Gb|AAF00675.1, partial (7%)
Length = 749
Score = 30.0 bits (66), Expect = 1.3
Identities = 14/24 (58%), Positives = 19/24 (78%)
Frame = +1
Query: 486 GSKDNTLKAKLLEARSKGQRSRLR 509
G+ N+LKAKLLEAR + QR ++R
Sbjct: 37 GALKNSLKAKLLEARLESQRVQIR 108
>TC9071 similar to UP|Q9LT85 (Q9LT85) Similarity to receptor protein
kinase, partial (15%)
Length = 872
Score = 29.6 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 29/47 (60%)
Frame = -3
Query: 116 IAEDKLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRKLARE 162
+ ++ ++ +Q R + AV +V ++++++ L E+IHRKLA E
Sbjct: 798 VVDENDIQVEVKQLRRNRAVVAVEPDIQEDQLLGAELENIHRKLAGE 658
>BP048142
Length = 529
Score = 29.6 bits (65), Expect = 1.7
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Frame = +3
Query: 120 KLVRKSKEQDRLHAAVQSVRDELEDERKLRKRSESIHRK--LARELSEMK----SSFTSA 173
+ V K KE+D L + + E + K RK++ +HRK L E EMK
Sbjct: 264 RCVSKEKEEDVLLEGMPDHYYDDEWQAKQRKKTRELHRKRRLEEEEEEMKIDEYREIGMR 443
Query: 174 LKDLEQERTRRKLLEDLCDEFARGINEYEQ 203
LK +E R+ L F R E E+
Sbjct: 444 LKGYPEEDVRK--ARKLVSSFIRAAEEVEE 527
>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
partial (10%)
Length = 879
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = -1
Query: 250 MDKNSIVDKLSLEIE-----TFIKAKQNSRSAENQVIRDRRNSLESVPLND 295
+ KN ++ L +E +FI+ ++N + EN ++ D N LESVPL++
Sbjct: 819 LQKNELILNLGKRVEGVWTWSFIR-RRNPSTRENLLVADLCNLLESVPLSE 670
>TC18994
Length = 514
Score = 29.3 bits (64), Expect = 2.2
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Frame = +1
Query: 110 DDLMKQIAEDKLVRKSKEQDRLHAA-------VQSVRDELEDERKLRKRSESIHRKLARE 162
D + E+ + +E+D L A ++ + ELE+ RK+ + L E
Sbjct: 124 DSFANGVEEESTSKLERERDELVAENVAKKEQIKKLTAELEESRKMTDVIAARASDLETE 303
Query: 163 LSEMKSSFTSALKDLEQERTRRKLLEDLCDEFARGINEYEQEVHTLKQKSEKD 215
LS ++ S + E R + L + I E+EV LK+ E++
Sbjct: 304 LSRLQHDMGSEMSAGEDARAKVADLTKAVGDKESRIGVKEKEVEGLKKVKEEN 462
>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
Length = 1127
Score = 28.9 bits (63), Expect = 2.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 303 MGDDDDDDSVGSDSHCFELNKPSHMGAKVHKEEILDKNLDETSKSNVKKKKSVPGEGF 360
MGDD DD GSD E++KP +E + S++ +K ++ P F
Sbjct: 633 MGDDAMDDFEGSDDEEQEVSKPGEASKPAEQEAV-----KSASEATTEKAEAAPST*F 791
>AV413073
Length = 403
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +1
Query: 12 HALQPLSPASYGSSMEMTPYNPAATPNSS 40
H+L P+ P+S + + TP NPA TP S
Sbjct: 115 HSLSPIHPSSCPTLIGDTPPNPATTPPPS 201
>AV409118
Length = 360
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +2
Query: 12 HALQPLSPASYGSSMEMTPYNPAATPNSS 40
H+L P+ P+S + + TP NPA TP S
Sbjct: 26 HSLSPIHPSSCPTLIGDTPPNPATTPPPS 112
>TC10043 similar to UP|Q9LVK2 (Q9LVK2) Gb|AAD25600.1, partial (10%)
Length = 424
Score = 27.7 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +3
Query: 305 DDDDDDSVGSDSHCFELNKPSHMGAKVHKEEI 336
+DDDD S S FEL+ S +G + ++EE+
Sbjct: 159 EDDDDAESCSSSDLFELDNLSAIGIERYREEL 254
>TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, partial (80%)
Length = 1644
Score = 27.7 bits (60), Expect = 6.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 448 HNNYGEASCSNAGWRNQASPVRQWMASLDISEASKVHSGSK 488
HN++ + SC++ GWR QW S + K +S K
Sbjct: 147 HNSHNQGSCASCGWRKWRC---QWGGSGQQGKREKRNSSGK 260
>AV768808
Length = 537
Score = 27.7 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 23 GSSMEMTPYNPAATPNSSLDFKGRIGEPHYSLKTSTELLKV 63
GSS P+ P + S F G G P+Y T + KV
Sbjct: 531 GSSARRGPFTPTKSECSFSFFSGYAGHPNYMANTESSKAKV 409
>AV775735
Length = 381
Score = 27.7 bits (60), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 294 NDAVSAPQAMGDDDDDDSVGSDSHC 318
+D V++P++ DD+DDD +HC
Sbjct: 300 SDPVTSPKSHDDDEDDDEDDE*NHC 226
>BP064999
Length = 547
Score = 27.3 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 350 KKKKSVPGEGFKNHIPSNSNKKSQSVDA 377
KK+ SVP E P NKKS+++DA
Sbjct: 68 KKRNSVPEEENATDSPKPLNKKSKNIDA 151
>BP034914
Length = 544
Score = 27.3 bits (59), Expect = 8.2
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Frame = +3
Query: 75 SSNISLIKALKTELDRTRIKVKELLRDRQADRHEVDDLMKQIAEDKLVRKSKEQDRL--- 131
SS+ S ++ DR+ + +E R R++D + +K RK +++DR
Sbjct: 81 SSSSSTASDSDSDSDRSSRRRREKERRRRSDGGSKRERESSRRREK--RKKRDRDRKKTK 254
Query: 132 -HAAVQSVRDELEDERKLRKRSESIHRKLARELSEMKSSFTSALKDLE 178
H EDE KLR + S+ R+L E + + L+ ++
Sbjct: 255 RHRHSDDESHSSEDEDKLRVQPLSVVRELMTEFPNVGNDLKQLLQMID 398
>TC19424 similar to UP|O04086 (O04086) Ser/Thr protein kinase isolog,
46094-44217, partial (12%)
Length = 592
Score = 27.3 bits (59), Expect = 8.2
Identities = 19/71 (26%), Positives = 40/71 (55%), Gaps = 1/71 (1%)
Frame = +2
Query: 589 SICDQSTQKGYSSLLSFTV-TDINSTVTKLMALGAELDGPIKYEVHGKVLSSNHAMQCYY 647
+I D +++ G S+ L+ +D++ T + L A L +K + ++NH+++C+Y
Sbjct: 5 NISDWTSKLGQSTPLNTACRSDLSDTSLCDLCLNAVLQ--VKQTLVSIDGNANHSLECFY 178
Query: 648 FWKLFTALIIS 658
F L+ A I++
Sbjct: 179 FAILYAAGIVN 211
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.131 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,804
Number of Sequences: 28460
Number of extensions: 128206
Number of successful extensions: 828
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of query: 676
length of database: 4,897,600
effective HSP length: 96
effective length of query: 580
effective length of database: 2,165,440
effective search space: 1255955200
effective search space used: 1255955200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC140913.13