BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140913.11 - phase: 0
(803 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP080021 151 1e-38
TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%) 109 2e-24
BP083725 89 2e-18
AW163886 58 5e-09
BP033315 54 7e-08
BP031377 38 0.006
AV769827 37 0.012
AW428780 36 0.027
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 35 0.036
TC9495 32 0.52
BP044614 29 3.4
TC9713 28 4.4
TC11364 homologue to GB|CAA56354.1|510876|PVME1G NADP dependent ... 28 5.7
BP062697 27 9.8
AV775197 27 9.8
>BP080021
Length = 393
Score = 151 bits (382), Expect(2) = 1e-38
Identities = 72/125 (57%), Positives = 92/125 (73%)
Frame = -2
Query: 267 ICATLAAVLAAGFVTDAIGIHAMFGAFVFGILVPKDGAFAGALVEKIEDLVSGLLLPLYF 326
IC TLA V+ FVTD IGIH++FGAFVFG+ +P+ G FA + ++IED VS LLLPLYF
Sbjct: 392 ICLTLAGVMLCAFVTDLIGIHSIFGAFVFGLTIPQGGEFASRVTKRIEDFVSTLLLPLYF 213
Query: 327 VSSGLKTDIATIQGLQSWGLLVFVTFTACFGKIVGTIVVSLICKVPFNESLVLGFLMNSK 386
SSGLKTD+A + G+ +WGLL+ V TAC GKI+GT V+++C +P ESL LG LMN K
Sbjct: 212 ASSGLKTDVAKLHGVVAWGLLLVVIATACVGKILGTFAVAMMCTLPVRESLTLGVLMNIK 33
Query: 387 GLVEL 391
+ L
Sbjct: 32 AWLSL 18
Score = 26.2 bits (56), Expect(2) = 1e-38
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 386 KGLVELIVLNIG 397
KGLVELIVLNIG
Sbjct: 36 KGLVELIVLNIG 1
>TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%)
Length = 444
Score = 109 bits (272), Expect = 2e-24
Identities = 51/79 (64%), Positives = 67/79 (84%)
Frame = +3
Query: 15 MQPASNGVFQGDHPLDYALPLAILQICLVLVVTRGLAYLLNPLRQPRVIAEIVGGILLGP 74
++ +SNGV+QGD+PLD+A PL I+Q +VLV++R LA+L PLRQP+VIAEIVGGILLGP
Sbjct: 207 VKTSSNGVWQGDNPLDFAFPLLIVQTIIVLVLSRSLAFLFKPLRQPKVIAEIVGGILLGP 386
Query: 75 SALGRNKGYLHAVFPPKSL 93
SALGR++ YLH +FP S+
Sbjct: 387 SALGRSESYLHRIFPKWSM 443
>BP083725
Length = 458
Score = 89.4 bits (220), Expect = 2e-18
Identities = 42/52 (80%), Positives = 46/52 (87%)
Frame = +1
Query: 7 SGNVCPPPMQPASNGVFQGDHPLDYALPLAILQICLVLVVTRGLAYLLNPLR 58
+ N C PPM+ ASNG FQGD+PLDYA+PLAILQICLVLVVTRGLAYLL PLR
Sbjct: 301 ASNGCSPPMKAASNGAFQGDNPLDYAVPLAILQICLVLVVTRGLAYLLRPLR 456
>AW163886
Length = 177
Score = 58.2 bits (139), Expect = 5e-09
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = +1
Query: 452 QLRILACFHGSRNIPSLINLIEASRGIKKHDALCVYAMHLKEFCERSSSILMAQK 506
QLR++AC HG NIPS+I LIE++ G + L ++ MHL E ERSSSI+M Q+
Sbjct: 16 QLRVMACIHGPSNIPSIIGLIESTCG-TSNSLLKLFIMHLVELTERSSSIMMVQR 177
>BP033315
Length = 433
Score = 54.3 bits (129), Expect = 7e-08
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Frame = -1
Query: 711 ERIVKDAEETVATIRE-INFCNLFLVGRR----PAGELGFALERSECPELGPVGGLLASQ 765
+ +VKD E ++IR I++ +L +VGR P+ L + SECPELG +G +LAS
Sbjct: 415 DEVVKDGIEMSSSIRRSIDYFDLVMVGREHPQTPSVLLKGHEKWSECPELGTIGDMLASP 236
Query: 766 DFRTTASVLVMQQYHNG 782
DF T AS+LV+QQ G
Sbjct: 235 DFVTKASILVVQQQRIG 185
>BP031377
Length = 401
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -3
Query: 731 NLFLVGRRPA--GELGFALER-SECPELGPVGGLLASQDFRTTASVLVMQQ 778
+ +VGRR E+ LE +E ELG +G LLAS D T AS+LV+QQ
Sbjct: 390 DFIIVGRRNGVKSEMTAGLENWTEYTELGVIGDLLASPDMETKASILVVQQ 238
>AV769827
Length = 438
Score = 37.0 bits (84), Expect = 0.012
Identities = 29/75 (38%), Positives = 42/75 (55%), Gaps = 4/75 (5%)
Frame = -2
Query: 709 YEERIVKDAEETVATIREINFCNLFLVG--RRPAGELGFALER-SECPELGPVGGLLASQ 765
Y E++ + E V I E +L +VG R P+ + ER +E ELGPVG +LAS
Sbjct: 437 YIEKVCGNIVEEVLAIGESGDYDLIIVGKGRFPSTMVAELAERHAEYAELGPVGDILASS 258
Query: 766 -DFRTTASVLVMQQY 779
+ +SVLV+QQ+
Sbjct: 257 TGHKMRSSVLVIQQH 213
>AW428780
Length = 330
Score = 35.8 bits (81), Expect = 0.027
Identities = 27/80 (33%), Positives = 37/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 706 SIIYEERIVKDAEETVATIREINFCNLFLVGR-----RPAGELGFALERSECPELGPVGG 760
++ Y E+ + E V TI + +VG+ L R E ELGPVG
Sbjct: 17 AVEYIEKDTCNIAEEVVTIGKGKEYEFIIVGKGQQILESTMMLNIQDSRLEHAELGPVGD 196
Query: 761 LLASQDFRTTASVLVMQQYH 780
LL S T+SVLV+Q +H
Sbjct: 197 LLTSSGQGITSSVLVIQDHH 256
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 35.4 bits (80), Expect = 0.036
Identities = 35/123 (28%), Positives = 52/123 (41%), Gaps = 12/123 (9%)
Frame = -3
Query: 131 AIAGISLPFALGIGSSF-----------VLQRTIAKGVNTSAF-LVYMGVALSITAFPVL 178
A+AG++ FAL G +F VL A G+ AF L AL+ A L
Sbjct: 852 ALAGLAAGFALAAGLAFGTGGFTFIRGAVLDFAFALGLAGEAFALAGAATALAFAAGLAL 673
Query: 179 ARILAELKLLTTSVGRMAMSAAAVNDVAAWILLALAVALSGNSQSPFVSLWVFLSGCGFV 238
A A + AA D+ A + LAL A +G + + + L + +GCGF
Sbjct: 672 AAGFALGLAAAAGFALAVVLVAAAFDLGAGLALALVAAAAGLALALGLGLDLAAAGCGFF 493
Query: 239 VCS 241
+ +
Sbjct: 492 LAA 484
>TC9495
Length = 523
Score = 31.6 bits (70), Expect = 0.52
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 176 PVLARILAELKLLTTSVGRMAMSAAAVNDVAAWILLALAVALSGNSQ-SPFVSLWVFLSG 234
PV + ++ LL S G+M + AA + A WI L + AL Q +P VS+ F +
Sbjct: 145 PVCVHLHGQVDLLQNSPGKMLTALAAAMETALWIDLHSSPALF*K*QLTPLVSM--FTNN 318
Query: 235 CGFVVCS 241
C +C+
Sbjct: 319 CIISICN 339
>BP044614
Length = 527
Score = 28.9 bits (63), Expect = 3.4
Identities = 16/53 (30%), Positives = 26/53 (48%)
Frame = -2
Query: 226 VSLWVFLSGCGFVVCSILIVLPIFKWMAQQCHEGEPVDELYICATLAAVLAAG 278
+ +WV L G V I +V + KW+ + C P E + A+L ++A G
Sbjct: 457 LEIWVLLLGIVGVYLIIRMVYRVVKWIIKCCRPRPPP*ESHELASLHRMVAIG 299
>TC9713
Length = 856
Score = 28.5 bits (62), Expect = 4.4
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -2
Query: 183 AELKLLTTSVGRMAMSAAAVNDVAAWILLALAVALSGNSQSPFVSLWVFLSGCGFVVCSI 242
+E+KL+ + +S+ ++ V + + LSG S++PFVS W+ L VV S+
Sbjct: 582 SEMKLIL-----LLLSSCKISVVTPARFV*IENILSGRSRNPFVSCWISLG--RVVVASV 424
Query: 243 LI 244
+I
Sbjct: 423 II 418
>TC11364 homologue to GB|CAA56354.1|510876|PVME1G NADP dependent malic
enzyme {Phaseolus vulgaris;} , partial (27%)
Length = 490
Score = 28.1 bits (61), Expect = 5.7
Identities = 28/97 (28%), Positives = 43/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 173 TAFPVLARILAELKLLTTSVGRMAMSAAAVNDVAAWILLALAVALSGNSQSPF----VSL 228
TA VLA +LA LKL+ ++ + I +A+ +S +++P +
Sbjct: 55 TASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKV 234
Query: 229 WVFLSGCGFVVCSILIVLPIFKWMAQQCHEGEPVDEL 265
W+ + G +V S L L FK HE EPV L
Sbjct: 235 WL-VDSKGLIVRSRLESLQHFK--KPWAHEHEPVKAL 336
>BP062697
Length = 580
Score = 27.3 bits (59), Expect = 9.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 70 ILLGPSALGRNKGYLHAVFPP 90
ILLG LG G+LH V PP
Sbjct: 388 ILLGTGTLGNLAGFLHYVXPP 450
>AV775197
Length = 439
Score = 27.3 bits (59), Expect = 9.8
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Frame = -3
Query: 224 PFVSLWVFLSGCGFVV----CSILI 244
P++SL+VFL GC FV+ CSI +
Sbjct: 233 PYLSLFVFLFGCCFVLYIDSCSIAV 159
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.140 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,144,533
Number of Sequences: 28460
Number of extensions: 180389
Number of successful extensions: 1109
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of query: 803
length of database: 4,897,600
effective HSP length: 98
effective length of query: 705
effective length of database: 2,108,520
effective search space: 1486506600
effective search space used: 1486506600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Medicago: description of AC140913.11