TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140913.1 - phase: 0 /pseudo
         (695 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV419255                                                               78  5e-15
TC9045 similar to UP|O81373 (O81373) Cotton fiber expressed prot...    31  0.76
TC14287 similar to UP|Q9LEU7 (Q9LEU7) Serine/threonine protein k...    30  1.7
TC19842 similar to UP|SUS2_PEA (O24301) Sucrose synthase 2  (Suc...    28  3.8
TC10393                                                                28  4.9
TC8523 homologue to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, complete     28  4.9
TC11188 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial...    28  4.9
TC8046 similar to UP|Q7XJC2 (Q7XJC2) Adenine phosphoribosyltrans...    27  8.4

>AV419255 
          Length = 421

 Score = 77.8 bits (190), Expect = 5e-15
 Identities = 54/109 (49%), Positives = 66/109 (60%), Gaps = 7/109 (6%)
 Frame = +3

Query: 487 LQLLLRFLNWLMLFLLYLIKKQRVMTMFLP----CITSF*DRVI*---R**II*IQTSMG 539
           ++  L  L  L+L LLYLI+K +VM + LP    C+  F  + I    R    *+ TSMG
Sbjct: 93  VEFFLSSLFSLILVLLYLIRKLKVMRIILP*SLPCVIRFLHQAIYIHSRFI*T*VITSMG 272

Query: 540 GHPRQRDLFIGLLQLFRPSQSNLRH*DHSKIQQLIWIP**PAIRLLLLM 588
           GHPR  DL IGL   FRPSQSNLRH + +K+Q LI IP  PAI  LL M
Sbjct: 273 GHPRH*DLLIGLPSQFRPSQSNLRHRERNKVQLLI*IPFYPAIHPLLPM 419


>TC9045 similar to UP|O81373 (O81373) Cotton fiber expressed protein 1,
           partial (17%)
          Length = 1201

 Score = 30.8 bits (68), Expect = 0.76
 Identities = 15/37 (40%), Positives = 23/37 (61%)
 Frame = +3

Query: 469 *RRTFGLVFILPTVGLVPLQLLLRFLNWLMLFLLYLI 505
           *RR   LVF+L  +G++ +     F+NW+ LF + LI
Sbjct: 843 *RRKISLVFVLKFLGVLSI-----FINWIFLFFIMLI 938


>TC14287 similar to UP|Q9LEU7 (Q9LEU7) Serine/threonine protein kinase-like
            protein (CBL-interacting protein kinase 5), partial (75%)
          Length = 1999

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 279  VLDPCLRIQFFHQIMFSLLYLLMQIQILSRENQKSLLIVQ*AVRVSRLLLK 329
            +++ CL +Q FH    SLLYL+ Q   +   N + + ++      + L +K
Sbjct: 1738 LVEKCLFLQRFHNRSISLLYLIAQFHFIQYVNFEIMFMIDVNTSKAELFIK 1890


>TC19842 similar to UP|SUS2_PEA (O24301) Sucrose synthase 2  (Sucrose-UDP
           glucosyltransferase 2) , partial (12%)
          Length = 688

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 628 RFVLLMLCCQSLYWVRVLGM-HSLFNLHLKWQL 659
           R +L  +CC SL  V++ G  H L NLH  WQ+
Sbjct: 373 RKLLFXVCCDSL--VKIHGQRHQLVNLHHPWQV 281


>TC10393 
          Length = 1063

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = -2

Query: 627 HRFVLLM----LCCQSLYWVRVLGMHSL--FNLHLKWQLSIFYII 665
           HRF LL+    LC + L  +  L + SL  FNL LK  +S+F+++
Sbjct: 720 HRFQLLLQPLFLCLEPLLLITKLILLSL*LFNLLLKTHISVFHLL 586


>TC8523 homologue to UP|Q8W1A0 (Q8W1A0) Cysteine synthase, complete
          Length = 1361

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 5/63 (7%)
 Frame = +1

Query: 164 LIWNWVQ*SCQLKPSLV----MELLLLTSISQRIMFIQIKKFGYWWPKLITLRS-LHASS 218
           L+WN ++  C  + SLV      L+L+ S+   +    +K F Y   KL  LRS LH   
Sbjct: 694 LLWNQLKVQCSQEESLVHTRFKGLVLVLSLVSWMSIFWMKSFKYQVMKL*KLRSFLHLKK 873

Query: 219 ALS 221
           A S
Sbjct: 874 AYS 882


>TC11188 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial (18%)
          Length = 523

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 59  NLCLSLSRGIDYALANGEVPLKANELPILMKQMYQ 93
           N+C SL   ++Y    GE+  K +E+P L   +YQ
Sbjct: 357 NVCTSLP--LNYQYVKGEINEKPHEMPSLQSNLYQ 259


>TC8046 similar to UP|Q7XJC2 (Q7XJC2) Adenine phosphoribosyltransferase
           (Fragment), partial (85%)
          Length = 1298

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 475 LVFILPTVGLVPLQLLLRFLNWLMLFLLYLIKKQRVMTMFLP 516
           L F++P +  +PL  LLR    +  FLL    KQ V+ + LP
Sbjct: 377 LCFLIPRLSRIPLTCLLRGTE-IKTFLLSQALKQEVLYLALP 499


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.357    0.160    0.557 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,869,974
Number of Sequences: 28460
Number of extensions: 198228
Number of successful extensions: 2407
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1819
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 1929
length of query: 695
length of database: 4,897,600
effective HSP length: 97
effective length of query: 598
effective length of database: 2,136,980
effective search space: 1277914040
effective search space used: 1277914040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 58 (26.9 bits)