TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140850.4 - phase: 0 /pseudo
         (1010 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14872 UP|Q40208 (Q40208) RAB2A, complete                             30  2.5
TC19589 similar to PIR|C87801|C87801 protein C10G11.9 [imported]...    28  7.3

>TC14872 UP|Q40208 (Q40208) RAB2A, complete
          Length = 1125

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 15/36 (41%), Positives = 21/36 (57%)
 Frame = -1

Query: 141 RFLQRKQKWRS*KRKKRLKNQIMN*KCCRHILIMCS 176
           R L++K K R  KR++   NQ +N  CC   L +CS
Sbjct: 168 RRLKKKMKRREEKRRESKGNQNINKNCCFFSLSLCS 61


>TC19589 similar to PIR|C87801|C87801 protein C10G11.9 [imported] -
           Caenorhabditis elegans {Caenorhabditis elegans;},
           partial (5%)
          Length = 578

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 770 SFVMNVKEPDQCQSGMKCLYKVFLKWKC 797
           SF +NVK  D  +  + CLYK FL + C
Sbjct: 470 SFSVNVKSADGFEILLGCLYKFFLSF*C 553


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.155    0.550 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,596,635
Number of Sequences: 28460
Number of extensions: 266439
Number of successful extensions: 2651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 2050
length of query: 1010
length of database: 4,897,600
effective HSP length: 99
effective length of query: 911
effective length of database: 2,080,060
effective search space: 1894934660
effective search space used: 1894934660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 60 (27.7 bits)