TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140849.7 + phase: 0 /pseudo/partial
         (191 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP042180                                                              141  6e-40
AV424319                                                              110  2e-25
BP036708                                                               33  0.041
BP060677                                                               30  0.35
TC11456 homologue to UP|Q9FI68 (Q9FI68) Arginine methyltransfera...    28  1.3
AV764870                                                               27  2.9
BP065007                                                               26  3.8
TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, part...    25  8.6

>BP042180 
          Length = 490

 Score =  141 bits (355), Expect(2) = 6e-40
 Identities = 69/98 (70%), Positives = 79/98 (80%), Gaps = 3/98 (3%)
 Frame = +2

Query: 4   TKHGCKLCIGPCTTTENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQP---IEVTRD 60
           T++GCKLCIGPCTT   GFYYDA Y +LGL D  FK IE+GA K   EKQP   IEVTRD
Sbjct: 80  TEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEKQPFERIEVTRD 259

Query: 61  QALEIFSDDKFKVEIINNLAPDETITVYRCGPLVDLYR 98
           QALE+FS++KFK+EIIN+L  D+TITVYRCGPLVDL R
Sbjct: 260 QALEMFSENKFKIEIINDLPADKTITVYRCGPLVDLCR 373



 Score = 38.5 bits (88), Expect(2) = 6e-40
 Identities = 17/24 (70%), Positives = 19/24 (78%)
 Frame = +1

Query: 103 FPGFFSILEGGQK*KKFTECLWHI 126
           F GF SILEGGQ+  KFT+ LWHI
Sbjct: 418 FKGFISILEGGQRS*KFTKSLWHI 489


>AV424319 
          Length = 421

 Score =  110 bits (274), Expect = 2e-25
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = +1

Query: 134 KEAKKYDHRILGLKQELVSLHEWSPGSWFFLPHGALIYNKLMDFIRNQYRHRGYQEV 190
           +EAKKYDHR+LG+KQEL+  H+WSPGSWFFLPHGA IYNKLMDFIRNQYR RGYQEV
Sbjct: 106 EEAKKYDHRVLGVKQELILHHKWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQEV 276


>BP036708 
          Length = 463

 Score = 32.7 bits (73), Expect = 0.041
 Identities = 18/48 (37%), Positives = 25/48 (51%)
 Frame = -1

Query: 64  EIFSDDKFKVEIINNLAPDETITVYRCGPLVDLYRACLEFPGFFSILE 111
           E  SD++ KV   N L P E +    C    D++R  L+FP  FS+ E
Sbjct: 184 EAASDERLKVLFENRLCPHELL----CLKFPDIHRVXLKFPHLFSVWE 53


>BP060677 
          Length = 440

 Score = 29.6 bits (65), Expect = 0.35
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -1

Query: 19  ENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEKQPIEVTRDQALEIFSDDKFKVEIINN 78
           E G       C L LK+  +++ +  A+ V  ++QP+  T+D  + I S +  + EI+  
Sbjct: 365 EQGGILQTSSCKLDLKEPYYRMSQPQAYPVAQDQQPLIQTQD--IHIQSQELDETEIMQQ 192

Query: 79  LAPDETITV 87
            +P+    V
Sbjct: 191 PSPNSCAQV 165


>TC11456 homologue to UP|Q9FI68 (Q9FI68) Arginine methyltransferase-like
           protein, partial (10%)
          Length = 669

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 14/54 (25%), Positives = 29/54 (52%)
 Frame = +2

Query: 29  CNLGLKDYQFKIIESGAFKVVVEKQPIEVTRDQALEIFSDDKFKVEIINNLAPD 82
           C L LK+  +++ +  A+ V  ++QP    + Q + I S D  + E++   +P+
Sbjct: 137 CKLDLKEPYYRMSQPQAYAVNQDQQPQPFIQTQDVHIKSQDLDETEMMQQPSPN 298


>AV764870 
          Length = 485

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 104 PGFFSILEGGQK*KKFTECLWHIVS*SKEFKEAKKYDHRILGLKQELVSL 153
           P F++ L  G+   +F + LW+ VS        K Y  R LGL + L+ L
Sbjct: 391 PSFYANLRNGRGILQFDQALWNDVS-------PKTYVQRDLGLLKGLLGL 263


>BP065007 
          Length = 440

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 10/22 (45%), Positives = 15/22 (67%), Gaps = 1/22 (4%)
 Frame = +1

Query: 146 LKQELVSLHEWSPGSW-FFLPH 166
           L ++ +S ++WS  SW FF PH
Sbjct: 220 LHEQQISFYDWSEQSWQFFRPH 285


>TC12581 weakly similar to UP|Q7NI33 (Q7NI33) Ycf52 protein, partial (49%)
          Length = 701

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 150 LVSLHEWSPGSWFFLPHGALIYNKLMDFIRNQY 182
           +V L++W   S+ FL  G +IY  L   I N++
Sbjct: 594 IVKLNQWEEWSFSFLG*GCIIYCCLYLIIANKF 692


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.329    0.146    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,812,397
Number of Sequences: 28460
Number of extensions: 52308
Number of successful extensions: 299
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of query: 191
length of database: 4,897,600
effective HSP length: 85
effective length of query: 106
effective length of database: 2,478,500
effective search space: 262721000
effective search space used: 262721000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)