BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140849.2 + phase: 0
(553 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV413186 83 1e-16
AU089102 81 5e-16
BP063629 80 9e-16
BP038410 74 6e-14
AV409405 63 1e-10
BP081623 57 6e-09
AI967878 57 1e-08
TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-l... 53 1e-07
TC11939 50 7e-07
TC19987 weakly similar to UP|Q7XJT3 (Q7XJT3) At2g17140 protein, ... 47 6e-06
BP039174 43 1e-04
BP040806 43 2e-04
AV772727 42 3e-04
BI418759 41 4e-04
TC19836 41 6e-04
AV425299 40 0.001
AV769479 39 0.002
BP035488 39 0.002
AV409767 37 0.006
TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, part... 37 0.008
>AV413186
Length = 398
Score = 83.2 bits (204), Expect = 1e-16
Identities = 42/115 (36%), Positives = 68/115 (58%), Gaps = 1/115 (0%)
Frame = +1
Query: 349 DMYSKCGFLHLGTCVFRIM-LERNIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDE 407
DMYSKCG L VF ++ +++++ +N+MI A HG ++A M ++M++ G+ P+
Sbjct: 4 DMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNR 183
Query: 408 GTFSALLSACCHAGLVKDGRELFWRMKDEFNIKARPEHYVYMVKLLGGVGELEEA 462
TF LL+AC +GLV++G + F M EF + EHY + LL G +E+
Sbjct: 184 ATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGYFDES 348
Score = 41.6 bits (96), Expect = 3e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 149 YSKLGVVHEARRVFDGIV-EPDLVLWNSLISAYGGSGMWEIGIQMFSSMRLAGKKPDGFT 207
YSK G + A RVF+ + + D+VLWN++ISA G + M + M +G +P+ T
Sbjct: 10 YSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNRAT 189
Query: 208 LAGLLGGIADSSLLSIG 224
LL + S L+ G
Sbjct: 190 FVVLLNACSLSGLVQEG 240
Score = 35.8 bits (81), Expect = 0.019
Identities = 24/110 (21%), Positives = 52/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 249 MYSRCKCIDSAYRVFCGIFN-PDLVTWSALISGYSQCGEYQKALLFFRKLNMKSKKLDSV 307
MYS+C +++A+RVF + N D+V W+ +IS + G +A++ + + +
Sbjct: 7 MYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNRA 186
Query: 308 LIATVLASITQMANVLPGCEIHGYVL-RHGLESDVKVSSALIDMYSKCGF 356
+L + + V G + ++ G+ D + + L D+ + G+
Sbjct: 187 TFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGY 336
>AU089102
Length = 480
Score = 80.9 bits (198), Expect = 5e-16
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Frame = +2
Query: 395 FDEMLQKGLVPDEGTFSALLSACCHAGLVKDGRELFWRMKDEFNIKARPEHYVYMVKLLG 454
F + G ++ T+ LL+AC HAGLV +G + F ++ +I+ + HY +V L G
Sbjct: 5 FGTRQELGFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEXHYACLVDLCG 184
Query: 455 GVGELEEAYNLTQSLPKPVDKAILGALLSCCDSYGNSELAETVAQQIFKSNPADNVYRVM 514
G L+E + + + L + ++ G LL+ C+ +GN+++ + V +I K + +
Sbjct: 185 RAGRLKEXFYIIEGLGVKLSLSVWGPLLAGCNVHGNADIGKLVTTKILKVEHENAGTYSL 364
Query: 515 LSNIYAGDGRWDDVKKLRDKMVG-GQKKMRGVSWIE 549
LSN+YA W + KM G KK WIE
Sbjct: 365 LSNMYASXRXWKXXAPVXMKMNDKGLKKQPRCXWIE 472
>BP063629
Length = 525
Score = 80.1 bits (196), Expect = 9e-16
Identities = 46/137 (33%), Positives = 72/137 (51%), Gaps = 2/137 (1%)
Frame = +1
Query: 12 LTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNN--HINYAHHVFDKTSTRSV 69
L CKS+ +KQ+ A + + L +D +++ + ++ +YA +FD S+
Sbjct: 109 LLKSCKSMCELKQIQALIFCSGLQQDRDTLNKLMAISTDSSIGDFHYALRIFDHIQQPSL 288
Query: 70 FLWNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGS 129
F +N MI+AFAK F AISLF+ + D + PDNYTY ++A D G R VH
Sbjct: 289 FNYNVMIKAFAKKGSFRRAISLFQQLREDGVWPDNYTYPYVLKAIGCLGDVGQGRKVHAF 468
Query: 130 AVSVGLGLDPICCSALV 146
+ GL D C++L+
Sbjct: 469 VIKSGLEFDAYVCNSLM 519
Score = 60.5 bits (145), Expect = 7e-10
Identities = 34/104 (32%), Positives = 54/104 (51%)
Frame = +1
Query: 146 VSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGIQMFSSMRLAGKKPDG 205
+S S +G H A R+FD I +P L +N +I A+ G + I +F +R G PD
Sbjct: 214 ISTDSSIGDFHYALRIFDHIQQPSLFNYNVMIKAFAKKGSFRRAISLFQQLREDGVWPDN 393
Query: 206 FTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDCHVGSLLVSM 249
+T +L I + G+++H KSGL+ D +V + L+ M
Sbjct: 394 YTYPYVLKAIGCLGDVGQGRKVHAFVIKSGLEFDAYVCNSLMDM 525
Score = 43.5 bits (101), Expect = 9e-05
Identities = 28/105 (26%), Positives = 50/105 (46%), Gaps = 2/105 (1%)
Frame = +1
Query: 327 EIHGYVLRHGLESDVKVSSAL--IDMYSKCGFLHLGTCVFRIMLERNIISYNSMILAYGL 384
+I + GL+ D + L I S G H +F + + ++ +YN MI A+
Sbjct: 145 QIQALIFCSGLQQDRDTLNKLMAISTDSSIGDFHYALRIFDHIQQPSLFNYNVMIKAFAK 324
Query: 385 HGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHAGLVKDGREL 429
G +A ++F ++ + G+ PD T+ +L A G V GR++
Sbjct: 325 KGSFRRAISLFQQLREDGVWPDNYTYPYVLKAIGCLGDVGQGRKV 459
>BP038410
Length = 468
Score = 73.9 bits (180), Expect = 6e-14
Identities = 43/141 (30%), Positives = 71/141 (49%)
Frame = -2
Query: 72 WNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGSAV 131
WNS+ F K +S I+ T+L+ + A D+ +F + + +HG +
Sbjct: 392 WNSVFDLFTKMC-WSGLIASASTVLI------------LLPAAGDTGNFVVGKSLHGYYI 252
Query: 132 SVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGIQ 191
+G +AL+ Y+K G+VH R++FD +V+ D+VLWN LI Y +G+ +
Sbjct: 251 QIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVGEALY 72
Query: 192 MFSSMRLAGKKPDGFTLAGLL 212
+ MR+ G K + T GLL
Sbjct: 71 LLQKMRIQGMKTNSSTFVGLL 9
Score = 68.9 bits (167), Expect = 2e-12
Identities = 38/147 (25%), Positives = 72/147 (48%)
Frame = -2
Query: 270 DLVTWSALISGYSQCGEYQKALLFFRKLNMKSKKLDSVLIATVLASITQMANVLPGCEIH 329
DLV+W+++ F K+ + + +L + N + G +H
Sbjct: 404 DLVSWNSVFD-------------LFTKMCWSGLIASASTVLILLPAAGDTGNFVVGKSLH 264
Query: 330 GYVLRHGLESDVKVSSALIDMYSKCGFLHLGTCVFRIMLERNIISYNSMILAYGLHGCAS 389
GY ++ G S + V +ALIDMY+K G +H G +F +++++++ +N +I Y +G
Sbjct: 263 GYYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVG 84
Query: 390 QAFTMFDEMLQKGLVPDEGTFSALLSA 416
+A + +M +G+ + TF LL A
Sbjct: 83 EALYLLQKMRIQGMKTNSSTFVGLLLA 3
Score = 59.3 bits (142), Expect = 2e-09
Identities = 36/138 (26%), Positives = 65/138 (47%)
Frame = -2
Query: 169 DLVLWNSLISAYGGSGMWEIGIQMFSSMRLAGKKPDGFTLAGLLGGIADSSLLSIGQELH 228
DLV WNS+ +F+ M +G T+ LL D+ +G+ LH
Sbjct: 404 DLVSWNSVFD-------------LFTKMCWSGLIASASTVLILLPAAGDTGNFVVGKSLH 264
Query: 229 GLSQKSGLDSDCHVGSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQCGEYQ 288
G + G S +V + L+ MY++ + ++F + + D+V W+ LI Y++ G
Sbjct: 263 GYYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVG 84
Query: 289 KALLFFRKLNMKSKKLDS 306
+AL +K+ ++ K +S
Sbjct: 83 EALYLLQKMRIQGMKTNS 30
Score = 40.0 bits (92), Expect = 0.001
Identities = 20/85 (23%), Positives = 40/85 (46%)
Frame = -2
Query: 23 KQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHVFDKTSTRSVFLWNSMIRAFAKA 82
K LH ++ S T +I +YA +++ +FD + V LWN +I +A+
Sbjct: 275 KSLHGYYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARN 96
Query: 83 RRFSNAISLFRTMLVDDIRPDNYTY 107
A+ L + M + ++ ++ T+
Sbjct: 95 GLVGEALYLLQKMRIQGMKTNSSTF 21
>AV409405
Length = 424
Score = 63.2 bits (152), Expect = 1e-10
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +1
Query: 8 LHSELTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHVFDKTSTR 67
L + L C QLH+ LK L+ D F T++ LY + I++AH +FD+T +
Sbjct: 151 LIATLLETCHCEKSTSQLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDK 330
Query: 68 SVFLWNSMIRAFAKARRFSNAISLFRTM 95
SV+LWN+++R + ++ +SLFR M
Sbjct: 331 SVYLWNALLRRYRAEGEWAETLSLFRRM 414
Score = 43.5 bits (101), Expect = 9e-05
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 126 VHGSAVSVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGM 185
+H + +GL D + L Y K +H A ++FD + + LWN+L+ Y G
Sbjct: 202 LHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAEGE 381
Query: 186 WEIGIQMFSSM 196
W + +F M
Sbjct: 382 WAETLSLFRRM 414
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/73 (28%), Positives = 38/73 (51%)
Frame = +1
Query: 226 ELHGLSQKSGLDSDCHVGSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQCG 285
+LH L K GL D + + L +Y + I A+++F + + W+AL+ Y G
Sbjct: 199 QLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAEG 378
Query: 286 EYQKALLFFRKLN 298
E+ + L FR+++
Sbjct: 379 EWAETLSLFRRMH 417
>BP081623
Length = 461
Score = 57.4 bits (137), Expect = 6e-09
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -2
Query: 477 ILGALLSCCDSYGNSELAETVAQQIFKSNPADNVYRVMLSNIYAGDGRWDDVKKLRDKMV 536
+ GALL C YG+ L A+ +F+ P Y ++L+N+YA RWDD K+R M
Sbjct: 460 VWGALLGACRIYGDVGLGRWAAEHLFELKPQHCGYYILLANMYAEIERWDDANKVRQLMK 281
Query: 537 G-GQKKMRGVSWIE 549
G KK G SW++
Sbjct: 280 SRGAKKNPGCSWVK 239
>AI967878
Length = 393
Score = 56.6 bits (135), Expect = 1e-08
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 20/91 (21%)
Frame = +1
Query: 370 RNIISYNSMILAYGLHGCASQAFTMFDEML-----------------QKGLV---PDEGT 409
RN++S+N+MIL + +HG ++FDEM+ +G+V PDE T
Sbjct: 31 RNLVSWNAMILGHCIHGNPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLPPDEVT 210
Query: 410 FSALLSACCHAGLVKDGRELFWRMKDEFNIK 440
F +L AC A L+ +GR F +M D F +K
Sbjct: 211 FIGILCACARAELLAEGRSYFKQMTDVFGLK 303
>TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-like,
partial (4%)
Length = 560
Score = 52.8 bits (125), Expect = 1e-07
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Frame = -3
Query: 12 LTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFN---NHINYAHHVFDKTSTRS 68
L N C ++ +K++HA + +T ++ +II A + +NYA VFD+
Sbjct: 336 LFNRCSTMNHLKEIHARIYQTGFHQNHLVVGKIIVFCAVSVPAGDMNYAVSVFDRVDKPD 157
Query: 69 VFLWNSMIRAFAKARRFSNAISLFRTMLVDD--IRPDNYTYACAIR 112
FLWN+MIR F + A+ ++ M + + PD +T++ ++
Sbjct: 156 AFLWNTMIRGFGNTNQPEKAVLFYKRMQQGEPHVVPDTFTFSFLLK 19
Score = 36.6 bits (83), Expect = 0.011
Identities = 23/75 (30%), Positives = 37/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 140 ICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGIQMFSSMRLA 199
+ C+ V A G ++ A VFD + +PD LWN++I +G + E + + M+
Sbjct: 234 VFCAVSVPA----GDMNYAVSVFDRVDKPDAFLWNTMIRGFGNTNQPEKAVLFYKRMQQG 67
Query: 200 GKK--PDGFTLAGLL 212
PD FT + LL
Sbjct: 66 EPHVVPDTFTFSFLL 22
Score = 32.7 bits (73), Expect = 0.16
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -3
Query: 225 QELHGLSQKSGLDSD-CHVGSLLVSMYSRCKCIDSAYRV--FCGIFNPDLVTWSALISGY 281
+E+H ++G + VG ++V D Y V F + PD W+ +I G+
Sbjct: 303 KEIHARIYQTGFHQNHLVVGKIIVFCAVSVPAGDMNYAVSVFDRVDKPDAFLWNTMIRGF 124
Query: 282 SQCGEYQKALLFFRKL 297
+ +KA+LF++++
Sbjct: 123 GNTNQPEKAVLFYKRM 76
>TC11939
Length = 696
Score = 50.4 bits (119), Expect = 7e-07
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Frame = +2
Query: 402 GLVPDEGTFSALLSACCHAGLVKDGRELFWRMKDEFNIKARPEH---YVYMVKLLGGVGE 458
GL+P + LLSAC HAG + + R L WR E+ + P H Y+ M + L G+
Sbjct: 131 GLIPSRQSLDFLLSACAHAGDLNNAR-LIWR---EYEVAGFPYHVLSYLRMYQALLASGD 298
Query: 459 LEEAYNLTQSLPKPVDKAILGALLSCCDSYGNSELAETV 497
A+ + Q +PK D + +LSC ++Y ++ +V
Sbjct: 299 HRSAHLMLQKIPKD-DMEVCSVILSCPNTYSANDHLNSV 412
>TC19987 weakly similar to UP|Q7XJT3 (Q7XJT3) At2g17140 protein, partial
(12%)
Length = 350
Score = 47.4 bits (111), Expect = 6e-06
Identities = 21/67 (31%), Positives = 37/67 (54%)
Frame = +3
Query: 370 RNIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHAGLVKDGREL 429
+ + +YNS+IL G G + + + DEM ++G+ PD T++ ++S C G +D L
Sbjct: 99 KTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGICPDICTYNNVISCLCEGGKTEDATSL 278
Query: 430 FWRMKDE 436
M D+
Sbjct: 279 LHEMLDK 299
Score = 35.8 bits (81), Expect = 0.019
Identities = 16/48 (33%), Positives = 27/48 (55%)
Frame = +3
Query: 371 NIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACC 418
+I +YN++I G A ++ EML KG+ P+ +F L+ +CC
Sbjct: 207 DICTYNNVISCLCEGGKTEDATSLLHEMLDKGISPNISSFKILIKSCC 350
>BP039174
Length = 564
Score = 43.1 bits (100), Expect = 1e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = -2
Query: 144 ALVSAYSKLGVVHEARRVFDGI----VEPDLVLWNSLISAYGGSGMWEIGIQMFSSMRLA 199
AL+ AYS++G A+RVFD I + PD + +I AYG +G E F +M+ A
Sbjct: 545 ALLRAYSRIGNAEGAQRVFDAIQLAGIIPDDKICGLVIKAYGMAGQSEKARIAFENMKRA 366
Query: 200 GKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDCHVGSLLVSMYSRCKCID 257
G +P + +L S L+ E +K G+ ++L + + ++
Sbjct: 365 GIEPTDRCIGSVLVAYEKESKLNTALEFLIDLEKEGIMVGEEASAILAGWFRKLGVVE 192
Score = 31.2 bits (69), Expect = 0.46
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -2
Query: 375 YNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHAGLVKDGRELFWRMK 434
Y +++ AY G A A +FD + G++PD+ ++ A AG + R F MK
Sbjct: 551 YKALLRAYSRIGNAEGAQRVFDAIQLAGIIPDDKICGLVIKAYGMAGQSEKARIAFENMK 372
>BP040806
Length = 534
Score = 42.7 bits (99), Expect = 2e-04
Identities = 22/111 (19%), Positives = 55/111 (48%), Gaps = 6/111 (5%)
Frame = +1
Query: 72 WNSMIRAFAKARRFSNAISLFRTMLVDDI-RPDNYTYACAIRACADSFDFGMLRVVHGSA 130
+ +++ A+ ++ A S+ M + +PD +TY+ I+ C D+F F ++ +++
Sbjct: 202 YTALLAAYCRSNLLDEAFSILNEMKNHPLCQPDVFTYSTLIKPCVDAFKFDLVELLYEDM 381
Query: 131 VSVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVE-----PDLVLWNSL 176
+ + + + + ++S Y K G + +V ++E PD+ N++
Sbjct: 382 AARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTI 534
>AV772727
Length = 528
Score = 41.6 bits (96), Expect = 3e-04
Identities = 18/59 (30%), Positives = 35/59 (58%)
Frame = -2
Query: 372 IISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHAGLVKDGRELF 430
+I+Y+S++ A + +A + + + KG+ PD T++ ++ C +G VKD +ELF
Sbjct: 527 VITYHSLLDALCKNHHVDKAIALLERVKDKGIQPDMYTYNIIIDGLCKSGRVKDAQELF 351
Score = 27.3 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = -2
Query: 69 VFLWNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTY 107
V ++S++ A K AI+L + I+PD YTY
Sbjct: 527 VITYHSLLDALCKNHHVDKAIALLERVKDKGIQPDMYTY 411
>BI418759
Length = 543
Score = 41.2 bits (95), Expect = 4e-04
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 371 NIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHAGLVKDGRELF 430
++ YN++I + +G S+A T+F+E+ K L PD T L+ A + D ++F
Sbjct: 347 DVAGYNNIISRFCENGLLSEAETLFEELCSKSLSPDVPTHRTLIDAYMKMERIDDALKVF 526
Query: 431 WRMKD 435
RM D
Sbjct: 527 HRMVD 541
>TC19836
Length = 464
Score = 40.8 bits (94), Expect = 6e-04
Identities = 24/84 (28%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 467 QSLPKPVDKAILGALLSCCDSYGNSELAETVAQQIFKSNPADNVYRVMLSNIYAGDGRWD 526
+++P I +L+S C +G ++AE + Q+ +S P + +L+ IYA G W
Sbjct: 2 RTMPMKPSTRIWSSLVSACKLHGRLDIAEMLGPQLIRSEPDNAANYTLLNMIYAEHGHWL 181
Query: 527 DVKKLRDKM-VGGQKKMRGVSWIE 549
+++ + M + KK G S IE
Sbjct: 182 HKEQVMEAMKLQRLKKCYGFSRIE 253
>AV425299
Length = 323
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 135 LGLDPICCSALVSAYSKLGVVHEARRVFDGIV----EPDLVLWNSLISAYGGSGMWEIGI 190
+GLD SALV Y K+G + A+ F+ + +PD+ ++NS+I Y +G + G
Sbjct: 15 IGLDASTASALVHLYCKVGNLERAKEAFEVLTRKGFQPDIKVYNSMIMGYVNAGDPKAGE 194
Query: 191 QMFSSMRLAG 200
+ M G
Sbjct: 195 SLMKKMEERG 224
>AV769479
Length = 287
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/77 (29%), Positives = 41/77 (52%)
Frame = +1
Query: 221 LSIGQELHGLSQKSGLDSDCHVGSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISG 280
L++G+++H KS + + V+ Y+ C I SA+R F + D+V W+ +I+
Sbjct: 43 LALGKQIHAHILKSKW-RNLIADNAFVNFYAECGKISSAFRTFDRMAKRDVVCWTTIITA 219
Query: 281 YSQCGEYQKALLFFRKL 297
SQ G +ALL ++
Sbjct: 220 CSQQGLGHEALLILSQM 270
>BP035488
Length = 534
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/117 (23%), Positives = 49/117 (40%), Gaps = 6/117 (5%)
Frame = +3
Query: 67 RSVFLWNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVV 126
R + WN ++ + A +++ ++ RPD +TYA I+A G +
Sbjct: 63 RDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGTALKL 242
Query: 127 HGSAVSVGLGLDP--ICCSALVSAYSKLGVVHEARRVFDGI----VEPDLVLWNSLI 177
+ G P + C+ ++ A V EA VF + EP++ +NSLI
Sbjct: 243 FRGMWNEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLI 413
>AV409767
Length = 411
Score = 37.4 bits (85), Expect = 0.006
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 389 SQAFTMFDEMLQKGLVPDEGTFSALLSA 416
++AF +F EML +GL PDEGT+S+L +A
Sbjct: 153 TEAFHLFREMLWRGLSPDEGTYSSLFNA 236
Score = 32.0 bits (71), Expect = 0.27
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +3
Query: 374 SYNSMILAYGLHGCASQAFTMFDEMLQKGLVPD-------EGTFSALLSACCHAGLVKD 425
+Y S+I AY L G S+ + D+M+ G++PD T++AL+ C G V++
Sbjct: 234 AYFSLINAYCLGGEFSKVSNLHDQMIHNGVLPDFVTGSPSLVTYNALIYGYCFLGRVEE 410
>TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, partial (7%)
Length = 539
Score = 37.0 bits (84), Expect = 0.008
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = +3
Query: 370 RNIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACC 418
R++++YN+MI H A + EM ++ PD T+ LL CC
Sbjct: 30 RDVVTYNTMISTACAHSREETALRLLKEMEERSCTPDLETYHPLLKMCC 176
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,042,128
Number of Sequences: 28460
Number of extensions: 137934
Number of successful extensions: 890
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of query: 553
length of database: 4,897,600
effective HSP length: 95
effective length of query: 458
effective length of database: 2,193,900
effective search space: 1004806200
effective search space used: 1004806200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC140849.2