TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140848.2 + phase: 0 /pseudo
         (573 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8990 homologue to UP|SR52_LYCES (P49972) Signal recognition pa...    82  3e-16
BP048843                                                               31  0.62
TC12916 similar to UP|Q9LK42 (Q9LK42) Emb|CAB10188.1, partial (46%)    28  3.1
TC9619 similar to UP|SPE1_PEA (Q43075) Arginine decarboxylase  (...    27  6.9
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin...    27  6.9
AW719845                                                               27  9.0

>TC8990 homologue to UP|SR52_LYCES (P49972) Signal recognition particle 54
           kDa protein 2 (SRP54), partial (50%)
          Length = 1141

 Score = 81.6 bits (200), Expect = 3e-16
 Identities = 39/125 (31%), Positives = 67/125 (53%)
 Frame = +3

Query: 314 KLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQ 373
           K+DG ++GG ALS    +  P+  +G GE M++ E F       R+LGMGD+  F++K Q
Sbjct: 3   KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQ 182

Query: 374 EVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAE 433
           EV+  +   +L +K+    F      +Q + + +MG + +V  M+PG +     + RE E
Sbjct: 183 EVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKE 362

Query: 434 RNLEI 438
              ++
Sbjct: 363 SQAKL 377


>BP048843 
          Length = 563

 Score = 30.8 bits (68), Expect = 0.62
 Identities = 16/36 (44%), Positives = 21/36 (57%)
 Frame = +2

Query: 14  LSHHRTTASSSSKLCSSLSYRNSFAKEIWGFVQSKS 49
           L  +RTT  SSS  C+SL     F+K I  F+Q+ S
Sbjct: 395 LKRNRTTHGSSSPFCNSLPSSTEFSKLINTFIQTHS 502


>TC12916 similar to UP|Q9LK42 (Q9LK42) Emb|CAB10188.1, partial (46%)
          Length = 573

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 16/60 (26%), Positives = 32/60 (52%)
 Frame = +3

Query: 11  STPLSHHRTTASSSSKLCSSLSYRNSFAKEIWGFVQSKSVTMRRMDMIRPVVVRAEMFGQ 70
           S+P +    TA  SS   + L+    F+  +WGF     +T+R + + + +++ + MFG+
Sbjct: 264 SSPTTLSGPTAPPSSTRSTLLTRVVRFSTSLWGFSALIGLTVRPIWVRKQLIIFSAMFGR 443


>TC9619 similar to UP|SPE1_PEA (Q43075) Arginine decarboxylase  (ARGDC)
           (ADC) , partial (13%)
          Length = 795

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +3

Query: 442 IIKAMTPEEREKPELLAESPVRRK-RVAQDSGKTEQQTDAILSNFEKYTTIMSGKPTCSS 500
           +++AM    + +PEL+ E+   R     QD         ++  +F+K   +++ KP C +
Sbjct: 183 VLRAM----QHQPELMFETLKHRVLEFDQDEVNAAAVVASLARSFDKMPYLVAAKPCCFN 350

Query: 501 TISNA----CSDEEPNGCNG 516
            +SN     CS ++ +  +G
Sbjct: 351 AVSNGGFYHCSGDDFSADSG 410


>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
           (At5g24020), partial (45%)
          Length = 470

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 163 KTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDV 204
           +T   V++ +G  GVGKTT  A +     + G S + +  DV
Sbjct: 62  ETPRVVVVTSGKGGVGKTTTTANMGLSLARLGFSVVAIDADV 187


>AW719845 
          Length = 209

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = +3

Query: 158 ELTFAKTGPTVILLAGLQGVGKTTVCA 184
           ++   K G +V+ + GL G+GKTT+ A
Sbjct: 15  KMELLKDGVSVVAVTGLGGLGKTTLAA 95


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,148,291
Number of Sequences: 28460
Number of extensions: 82868
Number of successful extensions: 477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of query: 573
length of database: 4,897,600
effective HSP length: 95
effective length of query: 478
effective length of database: 2,193,900
effective search space: 1048684200
effective search space used: 1048684200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)