BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140848.13 + phase: 0
(289 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8576 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein (At2g3622... 197 2e-51
TC9186 homologue to UP|Q9BIW6 (Q9BIW6) Brahma-associated protein... 176 3e-45
TC8421 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein (At2g3622... 105 7e-24
TC10263 49 8e-07
TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein... 37 0.003
AV773558 36 0.009
BP043430 34 0.033
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 32 0.096
TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, pa... 32 0.096
TC15513 homologue to UP|O61085 (O61085) Coronin binding protein,... 32 0.13
BP085056 31 0.21
TC11714 similar to UP|Q16861 (Q16861) Super cysteine rich protei... 30 0.37
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 25 0.49
TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,... 30 0.63
TC11114 similar to UP|ELS_MOUSE (P54320) Elastin precursor (Trop... 30 0.63
BP067321 30 0.63
TC9962 similar to UP|Q8L7Z6 (Q8L7Z6) AT3g54680/T5N23_40, partial... 29 0.82
TC19436 similar to UP|Q93Y06 (Q93Y06) Receptor protein kinase-li... 29 0.82
TC13377 similar to UP|Q9M5G4 (Q9M5G4) CDK-activating kinase, par... 29 1.1
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 29 1.1
>TC8576 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein
(At2g36220/F2H17.17), partial (17%)
Length = 604
Score = 197 bits (500), Expect = 2e-51
Identities = 113/166 (68%), Positives = 126/166 (75%), Gaps = 6/166 (3%)
Frame = +1
Query: 1 MLQVETLVSACAGGSTDRKIACETQADDLKTDPPPESSHHHPDSPPESFWLSRDEENEWL 60
M Q ETLVSACAGGS DRKI CET A+ KTDPP HPDSPPESFWLS+DEE++W
Sbjct: 166 MQQAETLVSACAGGSIDRKITCETLAN--KTDPP----ERHPDSPPESFWLSKDEEHDWF 327
Query: 61 DRNFIYERKESTKGNSSSTNLNPNSNSNSNSTSNSQRFA-NLKSKTSMIGLPKPQKPSF- 118
DRN +YERKESTKG++SS ST+NSQRF+ NLKS+ +IGLPKPQKPSF
Sbjct: 328 DRNALYERKESTKGSTSS------------STTNSQRFSLNLKSR--IIGLPKPQKPSFT 465
Query: 119 DAKNLRNHKP-SNIKLFPKRSASVGK---SFVEPSSPKVSCMGKVR 160
DAKN RNHKP +NIKLFPKRS SV K S EPSSPKVSCMG+VR
Sbjct: 466 DAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVR 603
>TC9186 homologue to UP|Q9BIW6 (Q9BIW6) Brahma-associated protein 111kD,
partial (3%)
Length = 618
Score = 176 bits (447), Expect = 3e-45
Identities = 111/208 (53%), Positives = 133/208 (63%), Gaps = 24/208 (11%)
Frame = +1
Query: 2 LQVETLVSACAGGSTDRKIACETQADDLKTDPPPESSHHHPDSPPESFWLSRDEENEWLD 61
+ +ETLVSACAGGSTDRKIACE D+ +PP HH DSPP SFWLS D E +W D
Sbjct: 34 VDLETLVSACAGGSTDRKIACEPLTDE--PEPP-----HHIDSPPASFWLSGDAEYDWWD 192
Query: 62 RN-FIYERKESTKGNSSSTNLNPNSNSNSNSTSNSQRFA-NLK--SKTSMIGLPKPQKPS 117
RN +YER EST+GNSS T+ NP SN SNSQRF+ NLK K ++IGLPK QK S
Sbjct: 193 RNAVVYERNESTRGNSSITSTNPGSN------SNSQRFSKNLKHHPKAAIIGLPKSQKAS 354
Query: 118 F-DAKNLRN-HKPSNIKLFPKRSASVGKS----FVEPSSPKVSCMGKVRSKRGK------ 165
F D +N RN H P N +LFPKRSASV +EP SPKVSC+G+VRSKR +
Sbjct: 355 FNDVRNRRNHHHPCNARLFPKRSASVRSKSDTVVIEPLSPKVSCIGRVRSKRDRNRRLRT 534
Query: 166 --------TSTVTAAAKAAVKEKTARTE 185
TS AAA V++K+ R++
Sbjct: 535 RQRSISSTTSVSAAAATTFVRQKSNRSQ 618
>TC8421 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein
(At2g36220/F2H17.17), partial (10%)
Length = 749
Score = 105 bits (263), Expect = 7e-24
Identities = 64/101 (63%), Positives = 71/101 (69%), Gaps = 1/101 (0%)
Frame = +1
Query: 190 KHSFFKSFRAIFRSGGRNKHDRMNDSSALDSSSITKNTNSVSDSKARDSTASLNDVSFVE 249
KH FF+ FRAIFRSG R K R DS+A DS+ TNSV KARDSTAS+ND SF E
Sbjct: 97 KHGFFERFRAIFRSGRRKKAHRETDSAAEDSTV----TNSVV--KARDSTASVNDASFAE 258
Query: 250 SVTRNSVSEGEPPGLGVMMRFTSGRRSESW-VDDSEIHVSR 289
S++ EPPGLG MMRF SGRRSESW V +SEIHVSR
Sbjct: 259 SIS------SEPPGLGGMMRFASGRRSESWGVGESEIHVSR 363
>TC10263
Length = 559
Score = 49.3 bits (116), Expect = 8e-07
Identities = 33/68 (48%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 222 SITKNTNSVSDSKARDSTASLNDVSFVESVTRNSVSEGEPPGLGVMMRFTSGRRSESW-V 280
S+TK S ST S D SF ESV EP GLG M RF SGRRSESW V
Sbjct: 5 SLTKKKTRNSRKARGGSTVSRTDTSFEESVRT------EPAGLGSMNRFASGRRSESWGV 166
Query: 281 DDSEIHVS 288
+ EI +S
Sbjct: 167 GECEIQLS 190
>TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1,
partial (46%)
Length = 1358
Score = 37.4 bits (85), Expect = 0.003
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Frame = +2
Query: 147 EPSSPKVSCMGKVRSKRGKTSTVTAAAKAAVKEKTARTERKQSKHSFFKSFRAIFRSGGR 206
EP+SPK+SCMG+++ K+ + K K+ ++ Q++ F S
Sbjct: 401 EPTSPKISCMGQIKHKKNQIK----------KSKSKKSVSLQNETRKFAS--------TT 526
Query: 207 NKHDRMNDSSALDSSSITKNTNSVSDSKARDSTASLNDVSFVESVTRNSVSEGEPPGLGV 266
NK + S++ D + K +V+ R + + S +E E P +
Sbjct: 527 NKTTTTSTSNSTDVIEVKK--KNVASKFQRMLFHAAKQPKSAGRKSDASSAEREAPHMSQ 700
Query: 267 MMRFTSGRRSESWVD------DSEIHV 287
M RF+SGR + S D EIH+
Sbjct: 701 MKRFSSGRDAFSSFDWKAEMAAEEIHI 781
>AV773558
Length = 469
Score = 35.8 bits (81), Expect = 0.009
Identities = 22/76 (28%), Positives = 40/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 47 ESFWLSRDEENEWLDR-----NFIYERKESTKGNSSSTNLNPNSNSNSNSTSNSQRFANL 101
++F+ S W+ + NFIY+ +SSS+ + +S+S+S+S+S+S + N
Sbjct: 203 QTFYQSVSRVG*WIQKSPINSNFIYKE*NPPSSSSSSSV*SSSSSSSSSSSSSSSLYTNT 382
Query: 102 KSKTSMIGLPKPQKPS 117
KS ++ KPS
Sbjct: 383 KSSSNSSSPSLKNKPS 430
>BP043430
Length = 493
Score = 33.9 bits (76), Expect = 0.033
Identities = 21/78 (26%), Positives = 39/78 (49%)
Frame = +3
Query: 40 HHPDSPPESFWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNSNSNSTSNSQRFA 99
H+ SPP FW + + + D+ + S+ + +S+ P+S+S +S+S+S
Sbjct: 159 HYTPSPPNQFW----KNSPFNDQRIC*VQSLSSSSSLNSSLSLPSSSSLLSSSSSSSSST 326
Query: 100 NLKSKTSMIGLPKPQKPS 117
+L +S + LP P S
Sbjct: 327 SLSFPSSSLSLPLPSLSS 380
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 32.3 bits (72), Expect = 0.096
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 79 TNLNPNSNSNSNSTSNSQRFANLKSKTSMIGLPKPQKPSFDAKNLRNHKP 128
T+ N N+N+N+N S ++ F N +S + P P KP +L NH P
Sbjct: 6 THTNTNTNTNTNKNSPTEIFTNF---SSYLSKPIPTKPLISFSSL-NHPP 143
>TC14392 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (77%)
Length = 1576
Score = 32.3 bits (72), Expect = 0.096
Identities = 16/58 (27%), Positives = 28/58 (47%)
Frame = +3
Query: 33 PPPESSHHHPDSPPESFWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNSNSN 90
PP + H P +P E L + W+D N++Y+ T G ++ + N N+N +
Sbjct: 285 PPQQHQHAQPSTPDEVRTLWIGDLQYWMDENYLYQCFAHT-GELATVKVIRNKNTNQS 455
>TC15513 homologue to UP|O61085 (O61085) Coronin binding protein, partial
(5%)
Length = 1029
Score = 32.0 bits (71), Expect = 0.13
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 31/146 (21%)
Frame = +1
Query: 36 ESSHHHPDSP----PESFWLSRDEENE----WLDRNFIYERKESTKGNSSSTNLNPNSNS 87
+ HH SP P S ++ R + + + E + N N N NSNS
Sbjct: 262 QQQQHHQSSPIFLDPSSQFIQRQTPTTTTTTFTGKRTLAEFQTQHHQNQIFNNNNSNSNS 441
Query: 88 NSNSTSNSQRFANL-----KSKTSMI---------GLPKPQKPSFDAKN-----LRNHKP 128
NSN T N Q +NL K +T+M L P +F + L +P
Sbjct: 442 NSNFTHN-QFLSNLLLRSVKPRTTMFPHMDFSVPSQLQNPNNLAFQTQRLGVPLLHQLRP 618
Query: 129 SNIKL----FPKRSASVGKSFVEPSS 150
I L FP R++++G + V+ S
Sbjct: 619 QPINLPDQNFPYRNSNLGLNRVQNQS 696
>BP085056
Length = 465
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 35 PESSHHHPDSPPESFWLSRDEENEWLDRNFIY--ERKESTKGNSSSTNLNPNSNS 87
P+S H+HP P W+S+ + + +FIY +R SS+T L+PN S
Sbjct: 33 PDSFHNHPSKP----WISQT*QKKKTSTSFIYN*QRILP*TKPSSTTELHPNCGS 185
>TC11714 similar to UP|Q16861 (Q16861) Super cysteine rich protein
(Fragment), partial (48%)
Length = 519
Score = 30.4 bits (67), Expect = 0.37
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 80 NLNPNSNSNSNSTSNSQRFANLKSKTS 106
N N NSNS SN SNS F+N K +T+
Sbjct: 134 NSNSNSNSFSN*NSNSNSFSNRKPETA 54
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -2
Query: 39 HHHPDSPPESFWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNSNSNSTSN---- 94
H H S E L ++ E ++ K ++S++N N NSNSNS SN
Sbjct: 233 HSHGPSRVEIL*LRAKQQTEKYQHQ--RHHQQQLKNSNSNSNSFSN*NSNSNSFSNRKPE 60
Query: 95 -SQRFANLKSKTSMI 108
+ RF ++ S + +
Sbjct: 59 TANRFRDINSNSKRL 15
Score = 26.9 bits (58), Expect = 4.1
Identities = 22/90 (24%), Positives = 36/90 (39%), Gaps = 3/90 (3%)
Frame = -1
Query: 31 TDPPPESSHHHPDSPPESFWLSRDEENEWLDRNFIYERKESTKGN---SSSTNLNPNSNS 87
T P + HHP WL + + ++ L R I + + N +S+ + N
Sbjct: 417 TTNPQNDNEHHPRQSLIKTWLGKTQRDKNLPRKKITTILDESFCN*TKNSTFTAHKNETY 238
Query: 88 NSNSTSNSQRFANLKSKTSMIGLPKPQKPS 117
+ S S R +SKT+ +P P S
Sbjct: 237 QTQPRSFSGRNPLAESKTTN*KIPAPTSSS 148
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 25.4 bits (54), Expect(2) = 0.49
Identities = 22/92 (23%), Positives = 32/92 (33%), Gaps = 1/92 (1%)
Frame = +1
Query: 71 STKGNSSSTNLNPNSNSNSNSTSNSQRFANLKSKTSMIGL-PKPQKPSFDAKNLRNHKPS 129
S + +ST P S + + + KS TS P P PS H P+
Sbjct: 106 SPSTSPTSTTTPPPSPTKVTENPPTAPSTSTKSPTSSASEEPSPPNPSTSTTQQPKHSPT 285
Query: 130 NIKLFPKRSASVGKSFVEPSSPKVSCMGKVRS 161
+ P S K +SP S + +S
Sbjct: 286 SPPASPSPSPPSTKPPTAMASPSTSPLSATKS 381
Score = 23.1 bits (48), Expect(2) = 0.49
Identities = 9/19 (47%), Positives = 12/19 (62%), Gaps = 2/19 (10%)
Frame = +2
Query: 29 LKTDPPPESSHHH--PDSP 45
L PPP + HHH P++P
Sbjct: 44 LPPPPPPPTHHHHHLPNNP 100
>TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,
chloroplast precursor (EF-Tu), partial (58%)
Length = 1146
Score = 29.6 bits (65), Expect = 0.63
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 71 STKGNSSSTNLNPNSNSNSNSTSNSQRFANLKSKTSMIGLP 111
S+ GNS + SNS S +S+S ++ L KT+M+G P
Sbjct: 818 SSPGNS*DDRSSRTSNSTSCRSSSSSTWSCLLRKTTMLGTP 696
>TC11114 similar to UP|ELS_MOUSE (P54320) Elastin precursor (Tropoelastin),
partial (3%)
Length = 517
Score = 29.6 bits (65), Expect = 0.63
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 31 TDPPPESSHHHPDSPPESFWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNSNSN 90
T PPP + + P PP +F ++E E + + + ++ + S +P S N+
Sbjct: 216 TQPPPSNLPNSPPPPPTTFDFWDEDEFEGVPVD-----QATSHSDPSDLPTDPKSPDNTT 380
Query: 91 STSNSQRFANLKSKTS 106
+ +N N K+ S
Sbjct: 381 AANNDDAQQNAKTSRS 428
>BP067321
Length = 513
Score = 29.6 bits (65), Expect = 0.63
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 31 TDPPPESSHHHPDS---PPESFWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNS 87
T PP HHP S PP N L +N R + +SST P+++S
Sbjct: 49 TSSPPYLQRHHPTSPPPPPPPLRRQSQSPNTHLQKN-PKTRHHYRRTRASSTTTIPSTSS 225
Query: 88 NSNSTSNSQRFA 99
N+ ++S++ A
Sbjct: 226 PWNAAASSRQTA 261
>TC9962 similar to UP|Q8L7Z6 (Q8L7Z6) AT3g54680/T5N23_40, partial (21%)
Length = 585
Score = 29.3 bits (64), Expect = 0.82
Identities = 12/51 (23%), Positives = 31/51 (60%)
Frame = +3
Query: 49 FWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNSNSNSTSNSQRFA 99
+W++++ + ++ N IYE+ +TK +++TN + N + +S+ S ++
Sbjct: 63 WWMAKNNKYASINFNHIYEKSITTKNTTTTTNPSKNPSLAPSSSYASASYS 215
>TC19436 similar to UP|Q93Y06 (Q93Y06) Receptor protein kinase-like protein,
partial (19%)
Length = 570
Score = 29.3 bits (64), Expect = 0.82
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +2
Query: 37 SSHHHPDSPPESFWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNSNSNSTSNSQ 96
SS P PP S R + + + TK SSST + + + SN+
Sbjct: 71 SSSSLPPPPPLSMTPPRSHQTQ---SPCYPSNAKQTKTTSSSTRSTSATTTANGKESNAH 241
Query: 97 RFAN--LKSKTSMIGLPKPQKPS 117
R A+ SKTS P P+ PS
Sbjct: 242 RVASSASSSKTSPSPAPSPRTPS 310
>TC13377 similar to UP|Q9M5G4 (Q9M5G4) CDK-activating kinase, partial (26%)
Length = 439
Score = 28.9 bits (63), Expect = 1.1
Identities = 29/128 (22%), Positives = 45/128 (34%), Gaps = 15/128 (11%)
Frame = +3
Query: 32 DPPPESSHHHPDSPPES-FWLSRDEE--------------NEWLDRNFIYERKESTKGNS 76
DP +S P SPP + W E + WL R F S K
Sbjct: 48 DPRAGASIPEPRSPPSTKSWTGSAPELTPTSTTAAVSPTTSRWLSRRFTTTSPPSEKSRL 227
Query: 77 SSTNLNPNSNSNSNSTSNSQRFANLKSKTSMIGLPKPQKPSFDAKNLRNHKPSNIKLFPK 136
S + ++S+ STS + S +S + P P+ P N+++ P
Sbjct: 228 SRCSKASQTSSSCTSTSGKKTRTPSSSSSSSVLTSPPSSPT----------PPNMEVSPS 377
Query: 137 RSASVGKS 144
++ G S
Sbjct: 378 ARSNSGWS 401
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 28.9 bits (63), Expect = 1.1
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -2
Query: 83 PNSNSNSNSTSNSQRFANLKSKTSMIGLPKPQKPSFDAKNLRNHKPSNIKLFPKRSASVG 142
P S+S+S+S+S+S S +S G P P +P + + S+ P ++S
Sbjct: 237 PKSSSSSSSSSSSS-----SSSSSSSGSPPPPRPPSTPPSSSSSSSSSSSSPPPGASSSS 73
Query: 143 KSFVEPSSPKVS 154
S SSP S
Sbjct: 72 SSSPSSSSPSSS 37
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.121 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,049,562
Number of Sequences: 28460
Number of extensions: 75737
Number of successful extensions: 908
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of query: 289
length of database: 4,897,600
effective HSP length: 89
effective length of query: 200
effective length of database: 2,364,660
effective search space: 472932000
effective search space used: 472932000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC140848.13