BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140774.9 - phase: 0 /pseudo
(174 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17802 similar to UP|Q9XII2 (Q9XII2) At2g16050 protein, partial... 66 2e-12
TC17193 similar to UP|Q9FMN6 (Q9FMN6) N-hydroxycinnamoyl/benzoyl... 30 0.17
TC18079 weakly similar to UP|UFO5_MANES (Q40287) Flavonol 3-O-gl... 30 0.30
TC12512 similar to UP|Q84VA4 (Q84VA4) DNAJ-like protein (Fragmen... 27 1.5
BF177497 27 1.9
TC12746 weakly similar to UP|Q8RWQ0 (Q8RWQ0) AT5g38990/K15E6_170... 27 1.9
TC12377 similar to UP|Q9SQF7 (Q9SQF7) Chitinase, partial (7%) 27 2.5
TC14315 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, par... 27 2.5
TC11942 similar to UP|GSHR_PEA (Q43621) Glutathione reductase, c... 26 3.3
TC19410 weakly similar to AAR24668 (AAR24668) At1g24040, partial... 26 4.3
TC17775 similar to UP|ARC2_LYCES (Q42885) Chorismate synthase 2,... 26 4.3
TC20199 weakly similar to UP|CA54_CANFA (Q28247) Collagen alpha ... 25 5.6
AV776347 25 5.6
TC13162 similar to UP|Q8C0D7 (Q8C0D7) CANDIDATE tumor suppressor... 25 5.6
TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b bindi... 25 5.6
AV408586 25 5.6
TC12678 weakly similar to UP|Q9LQK7 (Q9LQK7) F5D14.28 protein, p... 25 7.3
TC12549 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19... 25 7.3
BP085994 25 7.3
CN825579 25 7.3
>TC17802 similar to UP|Q9XII2 (Q9XII2) At2g16050 protein, partial (72%)
Length = 571
Score = 65.9 bits (159), Expect(2) = 2e-12
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 66 EIIHFSHPQHPLSMVDLPDLFICVGCKEYGSGKRFVCQQ-CNYQLHDFCALAPPALKAHP 124
EI HFSHP+H L F C GCKE G G R+ C C+Y LH CA+ P+L HP
Sbjct: 203 EISHFSHPKHKLRFEYSEFPFKCDGCKEVGIGSRYKCSSICDYDLHMHCAIPSPSL-YHP 379
Query: 125 FHSQHAMLFHSKPDDKI 141
F+ + + F SKP I
Sbjct: 380 FYPKCSFQFLSKPPGNI 430
Score = 21.2 bits (43), Expect(2) = 2e-12
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +1
Query: 152 RVYIPMHCMRFPNASMLCHAQH 173
R+ I +H MRF + +LC A +
Sbjct: 466 RLRISLHDMRF*PSPLLCKASN 531
>TC17193 similar to UP|Q9FMN6 (Q9FMN6)
N-hydroxycinnamoyl/benzoyltransferase-like protein,
partial (20%)
Length = 507
Score = 30.4 bits (67), Expect = 0.17
Identities = 27/97 (27%), Positives = 38/97 (38%), Gaps = 9/97 (9%)
Frame = -1
Query: 46 TKKSPPPIEFP----TSPQLIFGEEIIH---FSHPQHPLSMVDLPDLFICVGCKEYGSGK 98
+K + PP P T P L+F ++ F P M++L +L I
Sbjct: 312 SKSTLPPPSLPGYEVTFPSLLFA*PLLTATAFPIPNSFPYMLNLGELPIITIFGSRNRSS 133
Query: 99 RFVCQQCNYQLHDFCALAPP--ALKAHPFHSQHAMLF 133
R+ CN+ L FC A P A FH+ H F
Sbjct: 132 RYTIGDCNHSLTYFCTAASPWFATARCSFHAAHPRSF 22
>TC18079 weakly similar to UP|UFO5_MANES (Q40287) Flavonol
3-O-glucosyltransferase 5 (UDP-glucose flavonoid
3-O-glucosyltransferase 5) , partial (33%)
Length = 889
Score = 29.6 bits (65), Expect = 0.30
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 107 YQLHDFCALAPPALKAHPFHSQHAMLFHSK 136
+Q H C+ PPA + PFHS+ +HS+
Sbjct: 309 HQTHVSCS*TPPASNSTPFHSRIQKTWHSR 220
>TC12512 similar to UP|Q84VA4 (Q84VA4) DNAJ-like protein (Fragment), partial
(60%)
Length = 772
Score = 27.3 bits (59), Expect = 1.5
Identities = 9/27 (33%), Positives = 16/27 (58%)
Frame = +1
Query: 77 LSMVDLPDLFICVGCKEYGSGKRFVCQ 103
L VD+P F+C + Y + + ++CQ
Sbjct: 214 LQKVDVPSAFVCADSRIYNATEWYICQ 294
>BF177497
Length = 332
Score = 26.9 bits (58), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 144 RRLWQTNKRVYI-PMHCMRFPNASMLCHAQH 173
RR ++ K ++I +HC FP S L H H
Sbjct: 177 RRRTRS*KNIFIHTLHCFHFPMVSSLVHTSH 269
>TC12746 weakly similar to UP|Q8RWQ0 (Q8RWQ0) AT5g38990/K15E6_170, partial
(3%)
Length = 558
Score = 26.9 bits (58), Expect = 1.9
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 42 TTIVTKKSPPPIEFPTSPQ 60
TT KKSPPP FP PQ
Sbjct: 274 TTNHLKKSPPPSYFPRGPQ 218
>TC12377 similar to UP|Q9SQF7 (Q9SQF7) Chitinase, partial (7%)
Length = 327
Score = 26.6 bits (57), Expect = 2.5
Identities = 16/46 (34%), Positives = 21/46 (44%)
Frame = +2
Query: 14 NTFLLEKSPTKEYQITAPSHDDQYYSKVTTIVTKKSPPPIEFPTSP 59
N+F L SP+ +PS D S ++ PPPI PT P
Sbjct: 68 NSFSLYSSPSLSSPSPSPSPPDPSSSSFPRKTSRTKPPPI--PTPP 199
>TC14315 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, partial (11%)
Length = 716
Score = 26.6 bits (57), Expect = 2.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 70 FSHPQHPLSMVDLPDLFICVGCKEYGSGKRFVCQQC 105
FS P H ++ ++PD IC+G + + +C +C
Sbjct: 76 FSEPHHQVN*YEMPDPTICIGRGLWFPSCKPLC*EC 183
>TC11942 similar to UP|GSHR_PEA (Q43621) Glutathione reductase, cytosolic
(GR) (GRase) (GOR2) , partial (29%)
Length = 660
Score = 26.2 bits (56), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -2
Query: 94 YGSGKRFVCQQCNYQLHDFCALAP 117
+GS K F+C+ N LH+ L+P
Sbjct: 266 HGSTKNFICRSINNNLHNSFFLSP 195
>TC19410 weakly similar to AAR24668 (AAR24668) At1g24040, partial (28%)
Length = 606
Score = 25.8 bits (55), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (49%)
Frame = +2
Query: 51 PPIEFPTSPQLIFGEEIIHFSHPQHPLSMV 80
PP FP LIF I F H + P+S V
Sbjct: 197 PPTPFPLLQNLIFPIPIPLFRHTRRPISPV 286
>TC17775 similar to UP|ARC2_LYCES (Q42885) Chorismate synthase 2,
chloroplast precursor
(5-enolpyruvylshikimate-3-phosphate phospholyase 2) ,
partial (11%)
Length = 714
Score = 25.8 bits (55), Expect = 4.3
Identities = 14/38 (36%), Positives = 17/38 (43%)
Frame = -3
Query: 11 KKTNTFLLEKSPTKEYQITAPSHDDQYYSKVTTIVTKK 48
KKTN K P K+ + YYSK TI +K
Sbjct: 640 KKTNNKDQPKDPKKKVRSLTREKKKNYYSKPNTIYKRK 527
>TC20199 weakly similar to UP|CA54_CANFA (Q28247) Collagen alpha 5(IV) chain
(Fragment), partial (6%)
Length = 577
Score = 25.4 bits (54), Expect = 5.6
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Frame = +2
Query: 73 PQHPLSMVDLPDLFI-CVGCKEYGSGKRFVCQ------QCNYQLHDFCALAPPALKAHPF 125
P H LS+ + + C C++Y + C QC++ HPF
Sbjct: 26 PSHHLSVTQVLQRHVTCHNCQKYTNFPNLSCLL*SLLCQCHF---------------HPF 160
Query: 126 HSQHAMLF 133
HSQ +LF
Sbjct: 161 HSQVCLLF 184
>AV776347
Length = 359
Score = 25.4 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +2
Query: 55 FPTSPQLIFGEEIIHFSHPQH 75
FPTSP + +E I F P H
Sbjct: 119 FPTSPYFSYSQE*IEFGFPLH 181
>TC13162 similar to UP|Q8C0D7 (Q8C0D7) CANDIDATE tumor suppressor P33 ING1
homolog, partial (21%)
Length = 508
Score = 25.4 bits (54), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 86 FICVGCKEYGSGKRFVCQQCNYQ 108
F CVG +E GK + Q C+Y+
Sbjct: 179 FGCVGLREQPQGKWYCSQLCSYK 247
>TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b binding protein
3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP),
partial (97%)
Length = 1058
Score = 25.4 bits (54), Expect = 5.6
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +1
Query: 121 KAHPFHSQHAMLFHSKPDDKIQMRRLWQTNKR 152
+A P HS H H K + +IQ R W++ R
Sbjct: 112 QACPLHSGHWKDHHEKNNHQIQTRFFWKSMVR 207
>AV408586
Length = 428
Score = 25.4 bits (54), Expect = 5.6
Identities = 15/59 (25%), Positives = 26/59 (43%)
Frame = +2
Query: 4 RKQKQVEKKTNTFLLEKSPTKEYQITAPSHDDQYYSKVTTIVTKKSPPPIEFPTSPQLI 62
RK K+ +K+ TF+ + + S SK+ + T+ SPPP P ++
Sbjct: 107 RKWKRFSRKSGTFMTSSATPFTPSLGRTSSPPSKLSKI-LLTTETSPPPPPLTPPPVVV 280
>TC12678 weakly similar to UP|Q9LQK7 (Q9LQK7) F5D14.28 protein, partial
(10%)
Length = 396
Score = 25.0 bits (53), Expect = 7.3
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +3
Query: 13 TNTFLLEKSPTKEYQITAPS------HDDQYYSKVTTIVTKKSPPPIEFPTSPQLIFGEE 66
++ F+LE + T E + + + D S ++T + P F T LI +
Sbjct: 156 SDPFVLELAETLEDSLPSSTPLLHKLRDASSQSLISTPWPSRKDEPFRF-TDLSLIRSSK 332
Query: 67 IIHFSHPQHPLSMV 80
I+ +HP PLS++
Sbjct: 333 ILPVAHPTKPLSVL 374
>TC12549 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19K16_11
{Arabidopsis thaliana;}, partial (25%)
Length = 677
Score = 25.0 bits (53), Expect = 7.3
Identities = 14/34 (41%), Positives = 17/34 (49%), Gaps = 1/34 (2%)
Frame = -2
Query: 100 FVCQQCNYQLHDFCALAPPAL-KAHPFHSQHAML 132
F C + QLH C L PP+L A PF + L
Sbjct: 523 FSCHKHKPQLHFSCLLFPPSLGLAKPFQTPFLQL 422
>BP085994
Length = 377
Score = 25.0 bits (53), Expect = 7.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 50 PPPIEFPTSPQLIFGEEIIHFSHPQHPLSMVDLPDLFICV 89
PPP +P P F I S P HPL V LP+ + +
Sbjct: 148 PPP--YPAVP---F*LHPIFSSRPHHPLPCVSLPEQLLSI 252
>CN825579
Length = 646
Score = 25.0 bits (53), Expect = 7.3
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 49 SPPPIEFPTSPQLIFGEEIIHFSHPQHPLSMVDLPDLFICV 89
+PPP T+P L + S HP+ + +P C+
Sbjct: 91 TPPPSPMTTAPTLTTANPTLPISQLTHPVYSLSIPL*LRCI 213
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,125,111
Number of Sequences: 28460
Number of extensions: 73908
Number of successful extensions: 523
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of query: 174
length of database: 4,897,600
effective HSP length: 84
effective length of query: 90
effective length of database: 2,506,960
effective search space: 225626400
effective search space used: 225626400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC140774.9