BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140774.7 + phase: 0 /pseudo
(998 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP064526 140 8e-34
CN825561 122 3e-28
TC15234 similar to PIR|T47827|T47827 squamosa promoter binding p... 114 6e-26
BI419427 106 2e-23
TC9156 similar to UP|Q9SMW6 (Q9SMW6) Spl1-Related2 protein (Frag... 91 1e-18
AU088772 84 8e-17
TC16560 similar to UP|Q9S849 (Q9S849) Squamosa promoter binding ... 74 1e-13
BP055222 70 2e-12
AV775831 60 2e-09
TC10817 similar to UP|O80717 (O80717) At2g47080 protein, partial... 60 2e-09
BP055789 52 4e-07
BP054628 47 1e-05
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso... 32 0.50
TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like... 30 1.4
TC19403 similar to UP|O82651 (O82651) Squamosa-promoter binding ... 30 1.4
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 30 1.4
TC8419 homologue to UP|Q9SDX4 (Q9SDX4) Dynamin homolog, partial ... 30 1.9
BP063602 30 1.9
TC19614 30 2.5
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , part... 29 3.2
>BP064526
Length = 533
Score = 140 bits (354), Expect = 8e-34
Identities = 66/86 (76%), Positives = 72/86 (82%), Gaps = 1/86 (1%)
Frame = +1
Query: 97 TSASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVE 156
T+ +CQV +C+ DLS AKDYHRRHKVCE HSKA+ AL+GN MQRFCQQCSRFH L E
Sbjct: 31 TTLKRAVCQVQDCRADLSSAKDYHRRHKVCEGHSKATMALVGNVMQRFCQQCSRFHVLQE 210
Query: 157 FDEGKRSCRRRLAGHN-RRRRKTQPD 181
FDEGKRSCRRRLAGHN RRRRKT PD
Sbjct: 211 FDEGKRSCRRRLAGHNRRRRRKTHPD 288
>CN825561
Length = 646
Score = 122 bits (306), Expect = 3e-28
Identities = 57/90 (63%), Positives = 63/90 (69%)
Frame = +2
Query: 92 RSGSPTSASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRF 151
R S+ P CQV+NC DLS+AK YHRRHKVCE H+KA + QRFCQQCSRF
Sbjct: 173 RGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVCEYHAKAHAVHIAGMHQRFCQQCSRF 352
Query: 152 HPLVEFDEGKRSCRRRLAGHNRRRRKTQPD 181
H L EFD+ KRSCRRRLAGHN RRRK D
Sbjct: 353 HELSEFDDSKRSCRRRLAGHNERRRKNAID 442
>TC15234 similar to PIR|T47827|T47827 squamosa promoter binding protein-like
12 [imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (11%)
Length = 737
Score = 114 bits (286), Expect = 6e-26
Identities = 65/192 (33%), Positives = 103/192 (52%), Gaps = 16/192 (8%)
Frame = +2
Query: 823 KYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQ----ECWETLADENGQTPHAYA 878
+++F P+ GPGG+TPLH+AAS + SE V+D+LT+DP E WE+ D G TP+ YA
Sbjct: 14 RFLFRPDAVGPGGLTPLHVAASMSGSENVLDALTDDPGMVGIEAWESARDNTGLTPNDYA 193
Query: 879 MMRNNHSYNMLVARKCSDRQRSEVSVRIDNEI-----------EHPSLGIELMQKRINQV 927
+R +++Y LV +K S + + + I + H + + +Q +
Sbjct: 194 SLRGHYTYIQLVQKKTSKKGGRQCVLDIPGTLVDSYTKQKQSERHGTSKVSSLQTVKIET 373
Query: 928 KRVGDSCSKCAIAEVRAKRRFSGSR-SWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSV 986
V C C + K+ + G R + ++ P + SM+ +AAVCVCV + F+ P V
Sbjct: 374 TTVPLQCGLC-----KHKQAYGGMRPALVYRPVMLSMVTIAAVCVCVALFFKSLPRVYMT 538
Query: 987 SPFRWENLNYGT 998
PF WE+L YG+
Sbjct: 539 QPFNWESLKYGS 574
>BI419427
Length = 661
Score = 106 bits (265), Expect = 2e-23
Identities = 74/229 (32%), Positives = 124/229 (53%), Gaps = 25/229 (10%)
Frame = +1
Query: 670 FPVIIANASICKELRPLESEFDEEEKMCDAISEEHEHHFGRPKSRDEALHFLNELGWLFQ 729
FP I+A +C ++ LE + E D G+ K++ +A+ F++E+GWL
Sbjct: 7 FPFIVAEEDVCSDICGLEPLLELSETDPDIEGT------GKIKAKSQAMDFIHEIGWLLH 168
Query: 730 ----RERFSNVHEVPD-YSLDRFKFVLTFSVERNCCMLVKTLLDMLVDKHFEGEGLSTG- 783
+ R ++ D + L RFK+++ FS++ + C +VK LL++L+ EG +STG
Sbjct: 169 GSQLKSRMVHLSSSTDLFPLKRFKWLMEFSMDHDWCAVVKKLLNLLL----EGT-VSTGD 333
Query: 784 --SVEM-LKAIQLLNRAVKRKCTSMVDLLINY---SITSK---------NDTSKKYVFPP 828
S+++ L + LL+RAV+R +V+LL+ Y +I+++ + ++F P
Sbjct: 334 HPSLDLALSEMGLLHRAVRRNSKQLVELLLTYVPENISNEVRPEGKALVEGEKQSFLFRP 513
Query: 829 NLEGPGGITPLHLAASTTDSEGVIDSLTNDP----QECWETLADENGQT 873
+ GP G+TPLH+AA SE V+D+LTNDP E W+ D G T
Sbjct: 514 DAAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGST 660
>TC9156 similar to UP|Q9SMW6 (Q9SMW6) Spl1-Related2 protein (Fragment),
partial (3%)
Length = 850
Score = 90.5 bits (223), Expect = 1e-18
Identities = 38/47 (80%), Positives = 42/47 (88%)
Frame = +2
Query: 952 RSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGT 998
+ WLH PFIHS+LAVAAVCVCVCV FRGTP+VGS PFRWENL+YGT
Sbjct: 2 KGWLHRPFIHSILAVAAVCVCVCVFFRGTPFVGSEGPFRWENLDYGT 142
>AU088772
Length = 422
Score = 84.3 bits (207), Expect = 8e-17
Identities = 39/64 (60%), Positives = 43/64 (66%)
Frame = +1
Query: 98 SASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEF 157
SA P CQV+ C DLS AK HRRHKVCE H+KA LL Q QRFC QC RFH L +F
Sbjct: 202 SAVPPSCQVEGCYADLSGAKAXHRRHKVCEHHAKAPSXLLSEQQQRFCXQCXRFHELSQF 381
Query: 158 DEGK 161
D+ K
Sbjct: 382 DDPK 393
>TC16560 similar to UP|Q9S849 (Q9S849) Squamosa promoter binding
protein-like 8, partial (18%)
Length = 622
Score = 73.9 bits (180), Expect = 1e-13
Identities = 33/38 (86%), Positives = 34/38 (88%)
Frame = +2
Query: 142 QRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQ 179
QRFCQQCSRFH L EFD GKRSCR+RLA HNRRRRKTQ
Sbjct: 29 QRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQ 142
>BP055222
Length = 536
Score = 69.7 bits (169), Expect = 2e-12
Identities = 43/131 (32%), Positives = 71/131 (53%), Gaps = 3/131 (2%)
Frame = -1
Query: 871 GQTPHAYAMMRNNHSYNMLVARKCSDRQRS-EVSVRIDNEIEHPSLGIELMQKRIN-QVK 928
G TP YA +R +++Y LV +K + RQ + V V I + + + ++
Sbjct: 533 GSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPTNLTENDTNQKQNESSTTFEIA 354
Query: 929 RVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYV-GSVS 987
+ D C + +++ R + RS ++ P + SM+AVAAVCVCV +LF+ +P V
Sbjct: 353 KTRDQ-GHCKLCDIKLSCRTAVGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYMFR 177
Query: 988 PFRWENLNYGT 998
PF WE+L++GT
Sbjct: 176 PFSWESLDFGT 144
>AV775831
Length = 475
Score = 60.1 bits (144), Expect = 2e-09
Identities = 26/51 (50%), Positives = 30/51 (57%), Gaps = 2/51 (3%)
Frame = -3
Query: 104 CQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSR--FH 152
C VD C DLS +DYHRRHKVCE HS+ + + Q C CSR FH
Sbjct: 407 CLVDGCSSDLSNCRDYHRRHKVCELHSQTPEVTIAGMKQGLCLPCSRSSFH 255
>TC10817 similar to UP|O80717 (O80717) At2g47080 protein, partial (13%)
Length = 648
Score = 59.7 bits (143), Expect = 2e-09
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 926 QVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGS 985
+VK V C C +++ R + RS ++ P + SM+AVAAVCVCV +LF+ +P V
Sbjct: 71 EVKSVQKLCKLC---DLKLSCRTAAGRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLY 241
Query: 986 V-SPFRWENLNYGT 998
+ PFRWE+L +GT
Sbjct: 242 IFRPFRWESLEFGT 283
>BP055789
Length = 455
Score = 52.4 bits (124), Expect = 4e-07
Identities = 28/69 (40%), Positives = 38/69 (54%)
Frame = +3
Query: 62 KSTTVEPQQVEESLNLNLGSTGLVRPNKRIRSGSPTSASYPMCQVDNCKEDLSKAKDYHR 121
KS P+ EES ++ +G + R+ +GS A C VD C DLS ++YHR
Sbjct: 264 KSAPDTPKDPEESKAMSSSPSGSSK-RSRLHNGSLNMA----CSVDGCTSDLSDCREYHR 428
Query: 122 RHKVCEAHS 130
RH+VCE HS
Sbjct: 429 RHRVCEKHS 455
>BP054628
Length = 508
Score = 47.4 bits (111), Expect = 1e-05
Identities = 22/38 (57%), Positives = 29/38 (75%), Gaps = 1/38 (2%)
Frame = -2
Query: 962 SMLAVAAVCVCVCVLFRGTPYVGSV-SPFRWENLNYGT 998
SM+A+AAVCVCV +LF+ +P V V PF WE+L YG+
Sbjct: 501 SMVAIAAVCVCVALLFKSSPRVYYVFHPFSWESLEYGS 388
>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor (Atperox
P31) (ATP41) , partial (38%)
Length = 475
Score = 32.0 bits (71), Expect = 0.50
Identities = 23/103 (22%), Positives = 40/103 (38%)
Frame = +1
Query: 253 NAKNDNVQMETSPSYHHRDDQLNNAPPAPLTKDFLAVLSTTPSTPARNGGNGSTSSADHM 312
++ + N + SP N +PP P A STT STP S+
Sbjct: 112 HSTSTNTRAHNSPKSSATPSPTNKSPPPPPAPPRSASSSTTASTPTAATPPSSSPQLPST 291
Query: 313 RERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENDSPSKLP 355
+ ++ +S SP+ + +K P +P + +P+ P
Sbjct: 292 KPNATPTSTSPSPATPSTSSSELKPPSNSLAPTP-SPAPTSSP 417
>TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like
arabinogalactan-protein 9 {Arabidopsis thaliana;},
partial (38%)
Length = 942
Score = 30.4 bits (67), Expect = 1.4
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = +3
Query: 334 RVKLPLQLFGSSPENDSPSKLPSSRKYFSSESSNPVDERTPSS-------SPPVVEMNFG 386
RV LPL+LFG+ SPS PS + S + P DE TPSS SP + + G
Sbjct: 540 RVLLPLELFGAK----SPSSAPSPK----SSETTPSDE-TPSSGKKGGAPSPAASQKDNG 692
Query: 387 LQG 389
+ G
Sbjct: 693 VAG 701
>TC19403 similar to UP|O82651 (O82651) Squamosa-promoter binding
protein-like 1, partial (5%)
Length = 499
Score = 30.4 bits (67), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +3
Query: 513 VLSIYASMSSAAWVQLEENFLQRVDSLIHNSDSDFWRNG 551
VL+IY + A W ++ + + L+ SD FWR G
Sbjct: 3 VLTIYLRQAEAVWEEICYDLTSSLGRLLDVSDDTFWRTG 119
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 30.4 bits (67), Expect = 1.4
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Frame = -2
Query: 263 TSPSYHHRDDQLNNAPPAPLTKDFLAVLSTTPSTPARNGGNGSTSSADHMRE------RS 316
+SP D L + PA + L++ S + S+ +++ S+S+A +R +S
Sbjct: 405 SSPEPSLSDLFLFDGTPA-FSPSSLSLSSPSSSSGSKSLDASSSSAAATVRRTRYSVPKS 229
Query: 317 SGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENDSPSKLPSSRKYFSSESSNPVDERTPSS 376
S SS S + S GS P PS PSS SS SS+P + SS
Sbjct: 228 SSSSSSSSSSSSSSSSSS--------GSPPPPRPPSTPPSSSSSSSSSSSSPPPGASSSS 73
Query: 377 S 377
S
Sbjct: 72 S 70
>TC8419 homologue to UP|Q9SDX4 (Q9SDX4) Dynamin homolog, partial (15%)
Length = 942
Score = 30.0 bits (66), Expect = 1.9
Identities = 23/81 (28%), Positives = 35/81 (42%), Gaps = 1/81 (1%)
Frame = +1
Query: 300 NGGNGSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENDSPSKLPSSRK 359
N + ++S ++ E S SS P+DD D P+ GSS + +S
Sbjct: 133 NRASAASSWSNGSAESSPRSSSGPSDDWRSAFDAAANGPVSRSGSSRSGSNGHTRHNSDP 312
Query: 360 YFSSES-SNPVDERTPSSSPP 379
+ +S SN RTP+ PP
Sbjct: 313 AQNGDSGSNSGSRRTPNRLPP 375
>BP063602
Length = 505
Score = 30.0 bits (66), Expect = 1.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 161 KRSCRRRLAGHNRRRRKTQP 180
+R CRR L GH RRRR + P
Sbjct: 166 RRRCRRLLYGHRRRRRSSYP 107
>TC19614
Length = 591
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 345 SPENDSP--SKLPSSRKYFSSESSNPVDERTPSSSPPV 380
SP+N++P + LPS Y S+ SSN R+P + P+
Sbjct: 589 SPQNEAPHSASLPSPSAYSSTPSSNYPAHRSPENPKPL 476
>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , partial (42%)
Length = 519
Score = 29.3 bits (64), Expect = 3.2
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 283 TKDFLAVLSTTPSTPARNGGNGSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLF 342
T + LA STTPSTP+ + S S+ + S+ SP+ P+
Sbjct: 215 TSNSLASPSTTPSTPSSSSSPTSPSTTKQI------STPSPSPPP----------PVATA 346
Query: 343 GSSPENDS-PSKLPSSRKYFSSESSNPVDERTPSSSPP 379
SS +N + P + SS + +S+P + + SPP
Sbjct: 347 ASSSKNSAEPRRFKSSSPQNPTRNSHPYRISSHTDSPP 460
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,067,585
Number of Sequences: 28460
Number of extensions: 290975
Number of successful extensions: 2075
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2046
length of query: 998
length of database: 4,897,600
effective HSP length: 99
effective length of query: 899
effective length of database: 2,080,060
effective search space: 1869973940
effective search space used: 1869973940
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC140774.7