BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140773.5 - phase: 0 /pseudo
(194 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12576 homologue to GB|AAM55302.1|28624758|AY115841 auxin influ... 32 0.055
TC16267 similar to GB|AAP68282.1|31711852|BT008843 At1g73060 {Ar... 31 0.16
TC13298 similar to UP|Q9LG14 (Q9LG14) F14J16.24, partial (15%) 30 0.21
BU494441 28 1.0
TC16921 weakly similar to UP|Q9LFY2 (Q9LFY2) T7N9.11, partial (21%) 28 1.4
TC15111 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis re... 27 2.3
TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate p... 27 2.3
TC12530 similar to GB|AAB68983.1|500656|YSCH9666 Yhr143wp {Sacch... 27 2.3
TC10701 similar to UP|Q94A82 (Q94A82) AT5g20070/F28I16_220, part... 26 3.9
AV778312 26 3.9
TC8206 similar to UP|Q9STU0 (Q9STU0) ABC-type transport-like pro... 26 5.2
TC11464 25 6.7
TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, par... 25 6.7
TC9458 similar to UP|Q8VWX5 (Q8VWX5) Ribosome-like protein (Frag... 25 6.7
TC14178 25 8.8
TC19822 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 prec... 25 8.8
TC15098 similar to UP|Q8VYV7 (Q8VYV7) AT5g66120/K2A18_20, partia... 25 8.8
TC14179 25 8.8
TC14177 similar to UP|Q94SV8 (Q94SV8) Cytochrome c oxidase subun... 25 8.8
BF177554 25 8.8
>TC12576 homologue to GB|AAM55302.1|28624758|AY115841 auxin influx carrier
protein {Medicago truncatula;} , partial (36%)
Length = 832
Score = 32.3 bits (72), Expect = 0.055
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 139 LIFSKGPYDLSFLKSKFRTEPKIEN---NEKYLDWLDKVEKIKGPFWKEMGV 187
L+ S Y +S L ++RT + EN + W + +E + GP+WK +G+
Sbjct: 555 LLGSWTAYLISILYIEYRTRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGL 710
>TC16267 similar to GB|AAP68282.1|31711852|BT008843 At1g73060 {Arabidopsis
thaliana;}, partial (21%)
Length = 418
Score = 30.8 bits (68), Expect = 0.16
Identities = 19/65 (29%), Positives = 30/65 (45%)
Frame = +3
Query: 13 MTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHE 72
M +S + ++FL L SPSPSS+ +N+ T + E +SSQP +
Sbjct: 15 MAISSLPHNSTFLHPLAQFHSPSPSSSQTLRNLPFRLTTRIQSVGVGREAASSQPGSGPD 194
Query: 73 PNVNL 77
P +
Sbjct: 195PKAGV 209
>TC13298 similar to UP|Q9LG14 (Q9LG14) F14J16.24, partial (15%)
Length = 489
Score = 30.4 bits (67), Expect = 0.21
Identities = 22/54 (40%), Positives = 30/54 (54%)
Frame = -1
Query: 10 AIYMTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGS 63
A+Y + ++TS LSLLL FS S +ST F++ S NFE+ VE S
Sbjct: 264 ALYHRFWFLLSITSCHLSLLLRFS-SKNSTKNFKSA---SVTNFEVLKLEVEES 115
>BU494441
Length = 440
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/45 (26%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Frame = +3
Query: 146 YDLSFLKSKFRTEPKIEN---NEKYLDWLDKVEKIKGPFWKEMGV 187
Y +S L ++RT + EN + W + ++ + G +WK +G+
Sbjct: 171 YLISVLYMEYRTRKEKENVSFKNHVIQWFEVLDGLLGTYWKALGL 305
>TC16921 weakly similar to UP|Q9LFY2 (Q9LFY2) T7N9.11, partial (21%)
Length = 762
Score = 27.7 bits (60), Expect = 1.4
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = -3
Query: 22 TSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSS 64
TSF + LL L P+PS + ++ H + FE+ + EGS+
Sbjct: 406 TSFDMELLSLLLPTPSLHMARGSVAHRT*TFFELTVIPKEGST 278
>TC15111 similar to UP|RRS1_ARATH (Q9SH88) Ribosome biogenesis regulatory
protein homolog, partial (62%)
Length = 1280
Score = 26.9 bits (58), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 134 EAQLPLIFSKGPYDLSFLKSKF 155
++ PL+F K P+ L FLKS F
Sbjct: 1059 KSPFPLLFLKSPFPLLFLKSPF 994
>TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate protein 80,
partial (53%)
Length = 1180
Score = 26.9 bits (58), Expect = 2.3
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = -2
Query: 57 MARVEGSSSQPTKQHEPNVNLPV------NTQFMEEPDVKEAEDKIWKSQVIISCPNSSH 110
+AR+ G+S +PT PNV L + N + E K+ I + H
Sbjct: 573 LARIPGNSERPTSLRLPNVLLVIVMLGGNNNLLSNQIGRVETNTKLSNHANISTSSQGFH 394
Query: 111 EYLG 114
E+LG
Sbjct: 393 EFLG 382
>TC12530 similar to GB|AAB68983.1|500656|YSCH9666 Yhr143wp {Saccharomyces
cerevisiae;} , partial (5%)
Length = 464
Score = 26.9 bits (58), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 18 IFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEI 55
+F + FLL LLLL + S SS+ + N+T +E+
Sbjct: 159 MFLIIQFLLPLLLLSTSSSSSSFASASTSSNATTIYEV 272
>TC10701 similar to UP|Q94A82 (Q94A82) AT5g20070/F28I16_220, partial (32%)
Length = 668
Score = 26.2 bits (56), Expect = 3.9
Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 10/64 (15%)
Frame = -2
Query: 2 IDICPISKAIYMTLSHIFTLT--SFLLSLLL--------LFSPSPSSTLRFQNIVHNSTK 51
++IC + + + +L+H+F L+ SFL L+L +FS PSS +VH + K
Sbjct: 340 VEICSQAVSFFYSLTHLFYLSCCSFLGFLVLSKCQSFSNIFSTMPSSIF*L-FLVHINFK 164
Query: 52 NFEI 55
F I
Sbjct: 163 GFRI 152
>AV778312
Length = 610
Score = 26.2 bits (56), Expect = 3.9
Identities = 23/78 (29%), Positives = 30/78 (37%)
Frame = +3
Query: 8 SKAIYMTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQP 67
SK ++ IF F +S L L SP P H T EI + G+S+Q
Sbjct: 111 SKFLFSLTFFIFNFIPFSVSELHLHSPQPPCKFH----PHQ*THASEISLPTFPGNSNQN 278
Query: 68 TKQHEPNVNLPVNTQFME 85
Q P P T F +
Sbjct: 279 HAQPPPPWWQPPPTHFAQ 332
>TC8206 similar to UP|Q9STU0 (Q9STU0) ABC-type transport-like protein,
partial (10%)
Length = 657
Score = 25.8 bits (55), Expect = 5.2
Identities = 15/52 (28%), Positives = 24/52 (45%)
Frame = +2
Query: 43 QNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPDVKEAED 94
+ + N K E+ A EGS T +V +PV +F+ P + AE+
Sbjct: 53 EEVFLNIAKPAELESAAAEGSLVTLTLTSGESVQIPVGARFVGIPGTESAEN 208
>TC11464
Length = 511
Score = 25.4 bits (54), Expect = 6.7
Identities = 15/61 (24%), Positives = 32/61 (51%)
Frame = +3
Query: 16 SHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNV 75
S + +T+ + S ++ S +P++ ++N+VH+S R S+S T +H +V
Sbjct: 42 SELNRVTNGMGSKIISVSMAPATPALYKNVVHSSLGASASPSLRRSNSASHRTGRHPASV 221
Query: 76 N 76
+
Sbjct: 222 D 224
>TC19505 weakly similar to UP|Q9FG35 (Q9FG35) Emb|CAB82953.1, partial (12%)
Length = 723
Score = 25.4 bits (54), Expect = 6.7
Identities = 12/52 (23%), Positives = 26/52 (49%)
Frame = +3
Query: 13 MTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSS 64
+ +++F L ++ L FSPSP+++ + + +S+ + GSS
Sbjct: 330 VAFAYVFMLVFIAFTVFLAFSPSPNASSPWFTNIFSSSSSATTATTTTTGSS 485
>TC9458 similar to UP|Q8VWX5 (Q8VWX5) Ribosome-like protein (Fragment),
partial (58%)
Length = 808
Score = 25.4 bits (54), Expect = 6.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 20 TLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFE 54
T+ +FLL LL+L PSP + L + H S + E
Sbjct: 458 TVLAFLLVLLVLEEPSPLALLNDTGLHHFSPEPVE 354
>TC14178
Length = 609
Score = 25.0 bits (53), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Frame = -1
Query: 8 SKAIYMTLSHIFTLTSFLLSLLLLFSPSPSSTL--RFQNIVHN 48
+K I + ++H+ + T + L FSP PSS + QNI N
Sbjct: 459 TKVIMILVNHLTSRTETKEQMKLQFSPKPSSRTLHKEQNIFKN 331
>TC19822 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (27%)
Length = 532
Score = 25.0 bits (53), Expect = 8.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 13 MTLSHIFTLTSFLLSLLLLFSPSP 36
+TL+ +FTLTS SL L SPSP
Sbjct: 478 LTLTILFTLTSLTTSLYL--SPSP 413
>TC15098 similar to UP|Q8VYV7 (Q8VYV7) AT5g66120/K2A18_20, partial (66%)
Length = 1272
Score = 25.0 bits (53), Expect = 8.8
Identities = 19/58 (32%), Positives = 30/58 (50%)
Frame = -3
Query: 11 IYMTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPT 68
IY + T+ +LS +++ PS ++ R N+ HNS +N EGSSS+ T
Sbjct: 286 IYKHTLRLVKSTNQVLSKAMVY-PSFATN*RI-NLCHNSGRNLNEINTA*EGSSSKAT 119
>TC14179
Length = 571
Score = 25.0 bits (53), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Frame = -3
Query: 8 SKAIYMTLSHIFTLTSFLLSLLLLFSPSPSSTL--RFQNIVHN 48
+K I + ++H+ + T + L FSP PSS + QNI N
Sbjct: 416 TKVIMILVNHLTSRTETKEQMKLQFSPKPSSRTLHKEQNIFKN 288
>TC14177 similar to UP|Q94SV8 (Q94SV8) Cytochrome c oxidase subunit II
(Cytochrome c oxidase polypeptide II) , partial (6%)
Length = 628
Score = 25.0 bits (53), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Frame = -1
Query: 8 SKAIYMTLSHIFTLTSFLLSLLLLFSPSPSSTL--RFQNIVHN 48
+K I + ++H+ + T + L FSP PSS + QNI N
Sbjct: 424 TKVIMILVNHLTSRTETKEQMKLQFSPKPSSRTLHKEQNIFKN 296
>BF177554
Length = 246
Score = 25.0 bits (53), Expect = 8.8
Identities = 20/69 (28%), Positives = 27/69 (38%)
Frame = +1
Query: 85 EEPDVKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKG 144
E+ D E++ +S S E G +E DD P E + G
Sbjct: 16 EQQDEDSCEEEAGES----SEEEEEEEEEGEEEEEEDDGPGDRDAQPEEEEEEDFSLLGG 183
Query: 145 PYDLSFLKS 153
PYD+S LKS
Sbjct: 184 PYDISLLKS 210
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,570,118
Number of Sequences: 28460
Number of extensions: 48539
Number of successful extensions: 369
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of query: 194
length of database: 4,897,600
effective HSP length: 85
effective length of query: 109
effective length of database: 2,478,500
effective search space: 270156500
effective search space used: 270156500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC140773.5