TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.3 + phase: 0 /partial
         (140 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        89  1e-24
BP085845                                                               57  1e-09
BP054462                                                               49  4e-07
TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported]...    25  6.5
AV765111                                                               24  8.5

>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 88.6 bits (218), Expect(2) = 1e-24
 Identities = 44/79 (55%), Positives = 60/79 (75%)
 Frame = +3

Query: 9  RVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYI 68
          RV+P+ GV R  K  KL+ RFIGP+++ +RVG+V YR+ L P LS +H VFHVS LRKY+
Sbjct: 3  RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182

Query: 69 PDPSHVIQSDDVQVRDNLT 87
           DPSHVI+ +DVQ+  +L+
Sbjct: 183YDPSHVIRHEDVQLDVHLS 239



 Score = 39.3 bits (90), Expect(2) = 1e-24
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 106 KEIPLVKFVWEGATGESLTWELESKKLESYPELF 139
           K++  VK +W G +GE  TWE E    E YP LF
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397


>BP085845 
          Length = 464

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 33/106 (31%), Positives = 56/106 (52%)
 Frame = -2

Query: 21  KSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDPSHVIQSDDV 80
           K +K   + IGP++I + V  + Y +  + YL   H V HV+ L + + D S  I  + V
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242

Query: 81  QVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESLTWE 126
            + ++ +    P+ + D KV+ +R K I  VK +W G +G   +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104


>BP054462 
          Length = 422

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +1

Query: 3   GDHVFFRVTPVTGVGRALK-SKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHV 61
           GD VF ++ P      A K ++KL+ R+ GPY I  ++G V YR+ L P  S +H VFHV
Sbjct: 232 GDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLEL-PAHSRVHPVFHV 408

Query: 62  SQLR 65
           S L+
Sbjct: 409 SLLK 420


>TC12667 similar to PIR|D96525|D96525 protein T1N15.19 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (10%)
          Length = 498

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 17/62 (27%), Positives = 30/62 (47%)
 Frame = +3

Query: 11  TPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPD 70
           +PV  VGR  + ++   +      +  + GTV +R    P LSN +    +S L+ + P 
Sbjct: 42  SPVAVVGRRRRRRRRETQ--NNTDVKFKAGTVRHRNRTVPNLSNHNYQLSISLLQTHPPI 215

Query: 71  PS 72
           P+
Sbjct: 216 PT 221


>AV765111 
          Length = 364

 Score = 24.3 bits (51), Expect = 8.5
 Identities = 14/54 (25%), Positives = 28/54 (50%)
 Frame = +1

Query: 29  FIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQLRKYIPDPSHVIQSDDVQV 82
           F  PYQ+   + T+ +   L  +   L D   ++ L KYIP  + +I +++ ++
Sbjct: 169 FYQPYQLFGCLKTITHCFYLDSHYGTLFDF*TLACLGKYIPTHT*LISTNNDKI 330


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,138,297
Number of Sequences: 28460
Number of extensions: 23373
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of query: 140
length of database: 4,897,600
effective HSP length: 81
effective length of query: 59
effective length of database: 2,592,340
effective search space: 152948060
effective search space used: 152948060
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)