TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140772.6 + phase: 0 /partial
         (40 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    48  4e-07
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    42  3e-05
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    42  4e-05
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     42  4e-05
BP065488                                                               40  1e-04
BP046665                                                               29  0.24
TC9013                                                                 29  0.24
TC12046                                                                24  5.9

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +1

Query: 1   LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
           LYV +SRV SR GLK+L+ D++   TN   +V+YREVF N
Sbjct: 325 LYVALSRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFEN 444


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +2

Query: 1   LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
           LYV + RV SR  LK+L+ D++   TN   +V+YRE+F N
Sbjct: 353 LYVALPRVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFEN 472


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +3

Query: 6   SRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
           SRV SR GLK+L+ D++   TN   +V+YREVF N
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFEN 473


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 1  LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFR 39
          LYV +SRV S+ GLKILI+ D         +++Y+EVF+
Sbjct: 2  LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQ 118


>BP065488 
          Length = 439

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = -1

Query: 1   LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
           LYV +S V SR GLK+L+  ++   TN   + +Y+EVF+N
Sbjct: 190 LYVALSGVRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKN 71


>BP046665 
          Length = 524

 Score = 28.9 bits (63), Expect = 0.24
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 5   ISRVTSRGGLKILINDDDGDDTNVASSVIY 34
           +S + SR GLK+L+ D++   TN   +V+Y
Sbjct: 157 LSMLRSRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC9013 
          Length = 766

 Score = 28.9 bits (63), Expect = 0.24
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 16  ILINDDDGDDTNVASSVIYREVFR 39
           ILI D D  ++N  S+V+Y EVFR
Sbjct: 627 ILICDGDDSNSNSTSNVVYTEVFR 698


>TC12046 
          Length = 965

 Score = 24.3 bits (51), Expect = 5.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +2

Query: 5   ISRVTSRGGLKILINDDDGD------DTNVASSVIY 34
           I ++    G KIL  DD+GD      D ++A++V Y
Sbjct: 251 IGQINDGEGPKILYEDDEGDKIIISTDNDLAAAVSY 358


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.139    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,717
Number of Sequences: 28460
Number of extensions: 1968
Number of successful extensions: 29
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 40
length of database: 4,897,600
effective HSP length: 16
effective length of query: 24
effective length of database: 4,442,240
effective search space: 106613760
effective search space used: 106613760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)