TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140721.8 + phase: 0 /pseudo
         (59 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI418455                                                               62  2e-11
TC9089 similar to UP|RHRE_PEA (Q9S8P4) Rhicadhesin receptor prec...    30  0.073
BP085692                                                               29  0.21
TC11836 similar to GB|AAB51577.1|1755176|ATU75199 germin-like pr...    28  0.36
TC8184 similar to UP|Q9LJQ4 (Q9LJQ4) Muconate cycloisomerase-lik...    25  2.3
BP048915                                                               24  5.2
TC10228 similar to UP|Q9LDF5 (Q9LDF5) 3-hydroxybutyryl-CoA dehyd...    24  6.8
TC8854 weakly similar to UP|Q9LEU4 (Q9LEU4) CCR4-associated fact...    23  8.9

>BI418455 
          Length = 477

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = +1

Query: 1  MKILYLLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
          M+++Y LV+ILALASS A AYDPSPLQDFCV I DPK G
Sbjct: 16 MEVVYFLVTILALASSFASAYDPSPLQDFCVGINDPKYG 132



 Score = 28.9 bits (63), Expect = 0.21
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 40  DYSDLTHLVYLWLALILPLR 59
           +Y D THL YLWLA IL L+
Sbjct: 260 NYLD*THLAYLWLA*ILHLK 319


>TC9089 similar to UP|RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor
           (Germin-like protein), partial (93%)
          Length = 981

 Score = 30.4 bits (67), Expect = 0.073
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   LYLLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
           L L    LAL  + AF+ DP  LQD CVA  DP  G
Sbjct: 172 LLLFALPLALLLTTAFSSDPDYLQDLCVA--DPASG 273


>BP085692 
          Length = 334

 Score = 28.9 bits (63), Expect = 0.21
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 1   MKILYLLVSILALASSIAFAYDPSPLQDFCVAIK 34
           M++LYL++ ++ L  SIAF +D   +  FC+  K
Sbjct: 333 MRLLYLIMFLITLVISIAF*FDCLCVGSFCLGDK 232


>TC11836 similar to GB|AAB51577.1|1755176|ATU75199 germin-like protein
          {Arabidopsis thaliana;} , partial (56%)
          Length = 434

 Score = 28.1 bits (61), Expect = 0.36
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +3

Query: 1  MKILYLLVSILALASSIAFAYDPSPLQDFCVA 32
          + I+ L+V +L   ++   A DP  LQD CVA
Sbjct: 45 LHIMKLVVLLLLTLTTFTAASDPDSLQDICVA 140


>TC8184 similar to UP|Q9LJQ4 (Q9LJQ4) Muconate cycloisomerase-like protein,
           partial (17%)
          Length = 683

 Score = 25.4 bits (54), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 6/32 (18%)
 Frame = -1

Query: 32  AIKDPKDGD------YSDLTHLVYLWLALILP 57
           A+K+ K  +      YS  + ++YLWL L+LP
Sbjct: 500 AVKEAKHSNCQMLASYSCCSRILYLWLLLLLP 405


>BP048915 
          Length = 562

 Score = 24.3 bits (51), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (59%)
 Frame = +1

Query: 15 SSIAFAYDPSPLQDFCVAIKDPKDGDYSDLTHLVY 49
          S I  AY+ + + D C  IKD +  DY  ++++VY
Sbjct: 31 SLIVLAYEDNKIHDKCYIIKD-RQTDY--ISYIVY 126


>TC10228 similar to UP|Q9LDF5 (Q9LDF5) 3-hydroxybutyryl-CoA
           dehydrogenase-like protein, partial (44%)
          Length = 572

 Score = 23.9 bits (50), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
 Frame = -3

Query: 25  PLQDFCVAIKDPKDGDYSDLTHLVY-LWL 52
           P+Q   +A+KDP DG Y   +   Y LWL
Sbjct: 255 PIQ*SQLALKDPLDG*YPASSRYQYPLWL 169


>TC8854 weakly similar to UP|Q9LEU4 (Q9LEU4) CCR4-associated factor-like
           protein, partial (8%)
          Length = 916

 Score = 23.5 bits (49), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 46  HLVYLWLALILP 57
           HL+YLWL+ + P
Sbjct: 128 HLLYLWLSFLFP 163


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.145    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,260,928
Number of Sequences: 28460
Number of extensions: 13701
Number of successful extensions: 93
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of query: 59
length of database: 4,897,600
effective HSP length: 35
effective length of query: 24
effective length of database: 3,901,500
effective search space: 93636000
effective search space used: 93636000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)