BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.3 + phase: 0 /pseudo
(1439 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 42 5e-04
BP056337 39 0.006
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 39 0.008
AV779571 38 0.013
TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, p... 38 0.013
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 37 0.022
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot... 36 0.038
BP033820 36 0.049
BP043925 35 0.084
BI418811 35 0.084
AW720417 35 0.11
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 34 0.14
BP037950 33 0.32
TC19955 33 0.32
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 33 0.42
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 33 0.42
TC13097 similar to UP|Q9ZVB8 (Q9ZVB8) At2g41330 protein (At2g413... 33 0.42
TC10164 weakly similar to UP|O24099 (O24099) MtN12 protein (Frag... 33 0.42
BP058026 33 0.42
BP085186 32 0.54
>AV780009
Length = 529
Score = 42.4 bits (98), Expect = 5e-04
Identities = 52/160 (32%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Frame = -2
Query: 1273 FFHEILLS-LYKDFQMLAGLAV*ILENLFQVNVSS*VTL*SLGEQRNKSQYLDLPLKLNI 1331
FF +++L K +L GL IL+ L L* G +RNK +L PL+ +I
Sbjct: 477 FFSQLILH*SSKPIVILTGLVAPILDVLSLDIPYFLAPL*FHGARRNKPLFLVHPLRQSI 298
Query: 1332 GHWLQLLVNYNG--FYTFSEIYMFHAPSCLFYTVIIKVQYTLLLTLFFMSALNTWKLTVT 1389
G L L V +G + S MFH F T I +++TLL F NT V
Sbjct: 297 GPLLLLCVKSSGSPICSSSSSSMFHYRFLSFVT--ISLRFTLLTIRHFTRGPNT*NWIVM 124
Query: 1390 *LEKSYKVGLSSCFLFLLKTK*LISLPRLCFLRLLTFFYP 1429
S K+ S LF L *L LP L + + F+ P
Sbjct: 123 LSVPSCKLA*SISCLFPLTIS*LTFLPNLAPIFVSHFWGP 4
>BP056337
Length = 550
Score = 38.9 bits (89), Expect = 0.006
Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +2
Query: 848 NLQSLMILLLLLHQLYLLL---LLLHLFHLLFPDILPETPLLHLTSKIIFVTIFKL 900
+LQSL++ LLLH L LLL LLLH HLL + P L IIF+TIF L
Sbjct: 392 HLQSLIL*TLLLHSLLLLLPHHLLLHTLHLLLLTLHPLAQTL-----IIFLTIFLL 544
Score = 31.6 bits (70), Expect = 0.93
Identities = 21/71 (29%), Positives = 37/71 (51%)
Frame = +2
Query: 791 VLLSMIFNLERFLCQDMLLFMKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQ 850
+L+S F+ + Q ++L TL+LH LLLL+ + L+ L+L+L+ L
Sbjct: 356 ILISRSFSRQHHHLQSLIL*------TLLLHSLLLLLPHHLLLHTLHLLLLTLHPLAQTL 517
Query: 851 SLMILLLLLHQ 861
+ + + LL Q
Sbjct: 518 IIFLTIFLLSQ 550
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 38.5 bits (88), Expect = 0.008
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Frame = +2
Query: 829 NIFLIFPLYLILI-LLSLPVNLQSLMILLLLLHQLY---LLLLLLHLFHLLFPDILPETP 884
++F+ P++L+L LL L +NL +HQ LLL ++ L LL +LP+T
Sbjct: 5 HLFIPLPVFLLLQKLLPLAINLH--------IHQFLPKPLLLAIVLLMFLLLRKLLPQTI 160
Query: 885 LLHLTSKIIFVTIFKLRHIIF-LIFFPIIIFLTI-----ILLLLCLYIHNLSL----NPM 934
+LH+ + + L H+ F + P++ FL + + LL Y++ L+L P+
Sbjct: 161 ILHIPQHLQKLLPQHLNHLTFHYLLKPLLQFLNLHMSQHLQALLPQYLNLLTLQHLQKPL 340
Query: 935 LKQVNM 940
L +N+
Sbjct: 341 LPLLNL 358
>AV779571
Length = 538
Score = 37.7 bits (86), Expect = 0.013
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = -2
Query: 807 MLLFMKTISLTLILHPLLLLIGNIF--LIFPLYLILILLSLPVNLQSLMILLLLLHQLYL 864
++++ +SL L+L LLL++ I I + ++ +LL + + LQ L+ILL++L L
Sbjct: 321 LIIYHLLLSLLLLLLLLLLIVIMILSLTIE*VLML*VLLKMRLRLQQLLILLIILKNLLR 142
Query: 865 LLLLLHL 871
L LLLHL
Sbjct: 141 L*LLLHL 121
>TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, partial
(59%)
Length = 564
Score = 37.7 bits (86), Expect = 0.013
Identities = 26/85 (30%), Positives = 46/85 (53%), Gaps = 4/85 (4%)
Frame = -2
Query: 838 LILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFP-DI---LPETPLLHLTSKII 893
LI + + V + ++++LLLLL L LL+LL+ L L D+ L PLL L S ++
Sbjct: 323 LIAVAAAATVMVMAMLVLLLLLVLLILLVLLVVLLTLFVTVDLILDLVHNPLLVLPSMVL 144
Query: 894 FVTIFKLRHIIFLIFFPIIIFLTII 918
+ I ++FF +++ L ++
Sbjct: 143 I*LVLSFVSITMVLFFLVVLLLFLV 69
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 37.0 bits (84), Expect = 0.022
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = +2
Query: 1374 TLFFMSALNTWKLTVT*LEKSYKVGLSSCFLFLLKTK*LISLPRLCFLRLLTFFYPSWV* 1433
TL FMS NT K T EK ++ CFL+ + L S RL ++ F PSWV
Sbjct: 98 TLSFMSVQNT*K*IATL*EKGFRKD*FICFLYHHLSHWLTSTLRLSVHKIFIRFVPSWVS 277
Query: 1434 *TFI 1437
*T++
Sbjct: 278 *TYV 289
>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
Length = 1794
Score = 36.2 bits (82), Expect = 0.038
Identities = 28/101 (27%), Positives = 47/101 (45%), Gaps = 5/101 (4%)
Frame = -1
Query: 832 LIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLHLTSK 891
++FPL+L+ + + IL L + +L L LL LFH F
Sbjct: 1725 MLFPLFLLFSCI--------VPILQLNILSRFLPLFLLFLFHNFF--------------F 1612
Query: 892 IIFVTIFKLRHIIFLIFFPIIIFLTIILL-----LLCLYIH 927
+I + I + RHI+ IF +++ + LL L+C++IH
Sbjct: 1611 LITIFISQQRHILLFIFLFLLLLFFLFLLFISRRLMCIFIH 1489
>BP033820
Length = 537
Score = 35.8 bits (81), Expect = 0.049
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = -3
Query: 833 IFPLYLILILLSLPVNLQSLMILL----LLLHQLYLLLLLLHLFHLLFPDILPETPLLHL 888
+FPL+LIL L ++ SL +LL L+L L +++ LF +F + TPL
Sbjct: 532 LFPLFLILKLF*FLISC-SLFLLLQRI*LVLVVLLKIIMFTSLFMPIFVLFVIRTPLNFF 356
Query: 889 TSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLC 923
+ +++ + +F I L+ P + LT++L LLC
Sbjct: 355 SLEVLVMMVF-----ITLMDHPHKLCLTLLLKLLC 266
>BP043925
Length = 450
Score = 35.0 bits (79), Expect = 0.084
Identities = 24/70 (34%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
Frame = -3
Query: 710 NFLLPFGLMLYIM------LFSS*IEFLHHYFITNHLTSFFIINSLILPFSKFLVVYVML 763
N+ LP+ +L I+ LFSS I +H F+ SFFI + I FS F +Y+ +
Sbjct: 253 NYFLPYIFLLVIL*YISRLLFSSLILTIHPNFL---YISFFIFITFITYFSLFFSLYLSI 83
Query: 764 PLYILIEPNC 773
+I NC
Sbjct: 82 QYFIYKSENC 53
>BI418811
Length = 462
Score = 35.0 bits (79), Expect = 0.084
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -3
Query: 835 PLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETP 884
P +L+L+LL L ++L++ LL LH+ + LL H HLL +L P
Sbjct: 442 PFFLLLLLLLLRHPCRNLLLFLLHLHRFIITLLRRHRGHLLHLKLLLNRP 293
>AW720417
Length = 554
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Frame = -1
Query: 801 RFLCQDMLLFMKTI---------SLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQS 851
RF +L F+ + S L+L LLLL+ + L+ L LIL++L
Sbjct: 260 RFRLYSLLNFLNNVGVITTQLGPSQPLLLLLLLLLLIVLMLLVVLRLILLML-------L 102
Query: 852 LMILLLLLHQLYLLLLLLHLFHLLFPDILP 881
L++LLL+ H + L +L+L L L++P + P
Sbjct: 101 LVVLLLIRHHVPLHILMLLLLLLMWPWLKP 12
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 34.3 bits (77), Expect = 0.14
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Frame = -2
Query: 807 MLLFMKTISLTL-----ILHPLLLLIGNIFL---------IFPLYLILILLSL------- 845
MLLF T+ L++ I+ +L+ + +FL IF LYL+L+ L L
Sbjct: 318 MLLFALTVLLSVTNFSSIILSILVFLLLLFLLRLV*IW*TIFNLYLVLLFLLLFSFLLI* 139
Query: 846 PVNLQSLMILLLLLHQLYLLLLLLHLF 872
+ L++LLL L L+LL L LHL+
Sbjct: 138 RCHFTILLVLLLFLLLLFLLTLNLHLY 58
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/85 (28%), Positives = 46/85 (53%), Gaps = 1/85 (1%)
Frame = -2
Query: 502 LILSFLLYLKVLVMLFLFPIVIRIVNMYLTMPYGTLDLVICLIKDFI*CLAC-ILILLLI 560
+ILS L++L +L +L L I I N+YL L+ L+ F+ C ILL++
Sbjct: 267 IILSILVFLLLLFLLRLV*IW*TIFNLYLV-------LLFLLLFSFLLI*RCHFTILLVL 109
Query: 561 IIKMLVIFAILPSTNIYLSILVPHM 585
++ +L++F + + ++Y + H+
Sbjct: 108 LLFLLLLFLLTLNLHLYFPFVYNHI 34
Score = 31.2 bits (69), Expect = 1.2
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -2
Query: 153 RNYLHIDISLIVLVFILVVVLHLKLLRFIEMRIRLCNFLQD*MINFLLLELKFFSLILFL 212
+NY I L VLVF L L LL + + + + NF + ++L + F L+LFL
Sbjct: 372 QNYASILFFLCVLVF-----LFLMLLFALTVLLSVTNF------SSIILSILVFLLLLFL 226
Query: 213 L*TKFIL*-LFRKKVIMLLLLL*VYLLI 239
L I * +F +++L LLL +LLI
Sbjct: 225 LRLV*IW*TIFNLYLVLLFLLLFSFLLI 142
Score = 29.6 bits (65), Expect = 3.5
Identities = 35/121 (28%), Positives = 56/121 (45%)
Frame = -2
Query: 811 MKTISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLH 870
+KT + IL L +L+ FL L L +L N S+++ +L+ LLL LL
Sbjct: 381 IKTQNYASILFFLCVLV---FLFLMLLFALTVLLSVTNFSSIILSILVF---LLLLFLLR 220
Query: 871 LFHLLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLYIHNLS 930
L + + +L ++F+ +F +I F I++ L + LLLL L NL
Sbjct: 219 LV*IW-------*TIFNLYLVLLFLLLFSFL-LI*RCHFTILLVLLLFLLLLFLLTLNLH 64
Query: 931 L 931
L
Sbjct: 63 L 61
Score = 28.9 bits (63), Expect = 6.0
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Frame = -2
Query: 487 NRKMVYTSFIHHANLLILSFLLYLKVLVMLFLFPIVIRIVNMYLTMPYGTLDLVICLIKD 546
NR + + I N S L +L VLV LFL + V + +T +
Sbjct: 408 NRHYITSPLIKTQNYA--SILFFLCVLVFLFLMLLFALTVLLSVT--------------N 277
Query: 547 FI*CLACILILLLIIIKMLVIFAILPSTNIYL----SILVPHMLLLNLNFSI*IFGVLFQ 602
F + IL+ LL++ + ++ N+YL +L +L+ +F+I + +LF
Sbjct: 276 FSSIILSILVFLLLLFLLRLV*IW*TIFNLYLVLLFLLLFSFLLI*RCHFTILLVLLLFL 97
Query: 603 LLQFMV---IDIFSPF 615
LL F++ + ++ PF
Sbjct: 96 LLLFLLTLNLHLYFPF 49
>BP037950
Length = 529
Score = 33.1 bits (74), Expect = 0.32
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Frame = -2
Query: 843 LSLPVNLQSLMI---LLLLLHQLYLLLLLLHLF-HLLF---PDILPETPLLHL---TSKI 892
+ LP+ SL++ L LL+H ++LLLL LF LLF +L + P +HL T +
Sbjct: 498 VGLPITSNSLLMCHHLKLLVHLIHLLLLPCFLF*ELLFISSHHVLNDFP-VHLFLPTHHV 322
Query: 893 IFVTIFK----LRHIIFLIFFP-----IIIFLTIILLLLCLYIHNLSLNPMLKQVNMSVG 943
+ T+ K L+ II + P ++I LT+ ++L CL +N ++ + +
Sbjct: 321 VHNTLTKPLEHLKPIINPLPLPLLHDFLLILLTLSIVLFCL------INRIIMMILIIQC 160
Query: 944 CMLCKLNFKLLRKLVLGNLWIYHQMLSL 971
C L L LL L+ L + ++ L
Sbjct: 159 CTLLHLVLLLLLLLMSSTLLSPYLLIKL 76
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Frame = -2
Query: 819 ILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLL----LLHQLYLLLLLLHLFH- 873
I++PL L + + FL+ L L ++L L +N +MIL++ LLH L LLLLLL +
Sbjct: 279 IINPLPLPLLHDFLLILLTLSIVLFCL-INRIIMMILIIQCCTLLH-LVLLLLLLLMSST 106
Query: 874 LLFPDILPETPLLHLTSKIIFVTIFKLRHIIFLI 907
LL P +L L L+ K I + I L +I ++
Sbjct: 105 LLSPYLL--IKLFKLSEKPIIINISTLVGVINVV 10
>TC19955
Length = 548
Score = 33.1 bits (74), Expect = 0.32
Identities = 29/108 (26%), Positives = 48/108 (43%)
Frame = +3
Query: 819 ILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPD 878
IL +G++ F L + L L +L SL++ LLLLH LL + + LFP
Sbjct: 105 ILSETTTQVGSVLFAFKRSLASLFLPLSHSL-SLLLPLLLLH-----LLSDPMLYPLFPS 266
Query: 879 ILPETPLLHLTSKIIFVTIFKLRHIIFLIFFPIIIFLTIILLLLCLYI 926
+L + PL H L F P+++ L ++ ++ + I
Sbjct: 267 LLQQQPLQH-----------------HLFFLPLLLLLPSLMSVIAVTI 359
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 32.7 bits (73), Expect = 0.42
Identities = 23/64 (35%), Positives = 35/64 (53%)
Frame = -3
Query: 814 ISLTLILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFH 873
+S ++L PLLL N FL+ ++++ LL LP S + + L + LL+ LLHL
Sbjct: 784 LSGVILLLPLLLPSANAFLVLVVHVLHALLLLP----SRNVFVFLQVHVVLLVSLLHLHP 617
Query: 874 LLFP 877
L P
Sbjct: 616 HLRP 605
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 32.7 bits (73), Expect = 0.42
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 29/186 (15%)
Frame = -1
Query: 734 YFITNHL--TSFFIINSLILPFSKFLVV------------YVMLPLYILIEPNCNLELES 779
+FIT + T F S +LPF + Y++ L +L+ + L L S
Sbjct: 773 FFITREV*PTRFCHTVSFVLPFPLAYFISRRIRIAGI*S*YLIS*LLLLLPLSSPLLLRS 594
Query: 780 LYS*VTSLVIRVLLSMI-FNLERFLCQDMLLFMKTISLTLILHPL------LLLIGNIFL 832
+ + + R+ + F L +F LL ++ I TL++ P+ LI + +
Sbjct: 593 ALRFIATKITRL*RPFLCFPLGKFFFS--LLMVRVIVRTLLVLPMRSSASPFTLIITVII 420
Query: 833 IFPLYL--ILILLSLPVNLQSLMILLLLLHQLYLLL------LLLHLFHLLFPDILPETP 884
F + + +L SL + L S I L L LLL L LH F LLF + L E
Sbjct: 419 AFTIRVCSFFMLCSLQLPLSSFSISLCLSSSFQLLLPLQRSFLSLHDFLLLFLNKLDEPL 240
Query: 885 LLHLTS 890
+HL S
Sbjct: 239 GVHLCS 222
>TC13097 similar to UP|Q9ZVB8 (Q9ZVB8) At2g41330 protein
(At2g41330/F13H10.12), partial (7%)
Length = 660
Score = 32.7 bits (73), Expect = 0.42
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -3
Query: 845 LPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILPETPLLH 887
LP +Q + +LLLLLH L L L LH H L + P+LH
Sbjct: 367 LPTEIQKIPLLLLLLHLLLLPHLFLHHHHPLL--LNHNAPILH 245
>TC10164 weakly similar to UP|O24099 (O24099) MtN12 protein (Fragment),
partial (66%)
Length = 566
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/71 (33%), Positives = 33/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 818 LILHPLLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFP 877
L+LH L + + FP+ L+L L ++ LLLH +LLLH F L
Sbjct: 22 LLLHQFKLTLPKFLIQFPI-LLLHQAKLTLHTFLTQFSFLLLHHFQFPILLLHQFKLTLQ 198
Query: 878 DILPE-TPLLH 887
L + T LLH
Sbjct: 199 TFLSQLTILLH 231
>BP058026
Length = 389
Score = 32.7 bits (73), Expect = 0.42
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = -2
Query: 847 VNLQSLMILLLLLHQLYLLLLLLHLFHLLF 876
++++SL++LLLLL L LLLLLL L LLF
Sbjct: 97 IHIKSLLLLLLLLLLLLLLLLLLLLLLLLF 8
Score = 28.9 bits (63), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 903 IIFLIFFPIIIFLTIILLLLCLYIHNLSLNPMLKQVNMSVGCMLC 947
II +I III + II++++ Y LSL + + + VG M C
Sbjct: 25 IIIIIIIIIIIIIIIIIIIMI*YEFYLSLFNLKESLGSMVGIMPC 159
>BP085186
Length = 388
Score = 32.3 bits (72), Expect = 0.54
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 823 LLLLIGNIFLIFPLYLILILLSLPVNLQSLMILLLLLHQLYLLLLLLH-LFHLLFP 877
LLLL+G FPL+ L P+ L L++LLLLL L LLLLLLH L H +P
Sbjct: 139 LLLLLGC*H--FPLHSFL-----PLVLLLLLLLLLLLLLLLLLLLLLHFLPHPRYP 285
Score = 29.3 bits (64), Expect = 4.6
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +1
Query: 837 YLILILLSLPVNLQSLMILLLLLHQLYLLLLLLHLFHLLFPDILP 881
+L+L+L L S + L+LLL L LLLLLL L LL LP
Sbjct: 136 FLLLLLGC*HFPLHSFLPLVLLLLLLLLLLLLLLLLLLLLLHFLP 270
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.356 0.163 0.531
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,614,783
Number of Sequences: 28460
Number of extensions: 529949
Number of successful extensions: 9915
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 6652
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 1802
Number of HSP's gapped (non-prelim): 8247
length of query: 1439
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1337
effective length of database: 1,994,680
effective search space: 2666887160
effective search space used: 2666887160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC140721.3