BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.12 - phase: 0
(109 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP085968 69 9e-14
TC15451 27 0.51
TC15759 similar to UP|Q8LF06 (Q8LF06) Leucoanthocyanidin dioxyge... 26 0.87
BP074200 26 1.1
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 25 1.9
AV408284 25 1.9
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat... 25 1.9
TC13844 similar to UP|Q949H4 (Q949H4) Leaf ubiquitous urease (U... 24 3.3
TC10909 24 3.3
AV769549 24 4.3
BP068601 23 5.6
TC16131 homologue to UP|MSI1_LYCES (O22466) WD-40 repeat protein... 23 7.4
TC8962 homologue to UP|Q9M5M1 (Q9M5M1) 40S ribosomal protein S11... 23 7.4
TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP... 23 7.4
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 23 7.4
TC10748 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter,... 23 9.6
TC13396 23 9.6
TC17781 23 9.6
>BP085968
Length = 341
Score = 69.3 bits (168), Expect = 9e-14
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +2
Query: 40 TDEQRCVHDKIMDSKGFDDGGFFFLYGYGGTGKTFIWKTSLAVVRSKGLIVLNAAS 95
T +Q V+ +IM S DDGGF+FLYG+GG+GKTF+W T + +RS+GL+VLN AS
Sbjct: 11 TAKQSKVYKQIMSSVWSDDGGFYFLYGFGGSGKTFVWNTWSSGLRSQGLMVLNVAS 178
>TC15451
Length = 662
Score = 26.9 bits (58), Expect = 0.51
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 56 FDDGGFFFLYGYGGTGKTFIWKTSLAVVRSKGLIVLNAASRVYREFY 102
F+ F G G G +WK L+ V S LIV+ ++S EF+
Sbjct: 330 FESFSSLFFGGDGVMGIEAVWKFLLSTVMSSILIVIESSSANK*EFF 470
>TC15759 similar to UP|Q8LF06 (Q8LF06) Leucoanthocyanidin dioxygenase-like
protein, partial (34%)
Length = 929
Score = 26.2 bits (56), Expect = 0.87
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 48 DKIMDSKGFDDGGFFFLYGYGGT 70
D I D K ++ FFF+ G GGT
Sbjct: 578 DCISDMKLMEEADFFFIIGLGGT 646
>BP074200
Length = 411
Score = 25.8 bits (55), Expect = 1.1
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 13 TNKLIVDELNYNKDELTKTQTDMLLMLTDEQRCVHDKIMDSKGFDDGGFFFLYGYGGTGK 72
T ++V +YN + +T DE+ ++ K + + + +G +L G G+GK
Sbjct: 160 TVPVVVACSSYNNIPASILETGSFRGPLDEEMILNSKSQEIEPYLNGRCIYLVGMMGSGK 339
Query: 73 TFIWK 77
T + K
Sbjct: 340 TTVGK 354
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 25.0 bits (53), Expect = 1.9
Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 9/65 (13%)
Frame = +3
Query: 47 HDKIMDSKGFDDGGFFFLYGYGGTGKTFIWK-----TSLAVVRSKGLIV----LNAASRV 97
H ++ +S G LYG GTGKT + + T +R G + + SR+
Sbjct: 393 HPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRM 572
Query: 98 YREFY 102
RE +
Sbjct: 573 VRELF 587
>AV408284
Length = 425
Score = 25.0 bits (53), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 64 LYGYGGTGKTFIWKTSLAVVRSKGLIVLN 92
LYG GTGKT + K A+ + G + +N
Sbjct: 106 LYGPPGTGKTMLAK---AIAKESGAVFIN 183
>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (65%)
Length = 901
Score = 25.0 bits (53), Expect = 1.9
Identities = 16/46 (34%), Positives = 21/46 (44%), Gaps = 5/46 (10%)
Frame = +3
Query: 47 HDKIMDSKGFDDGGFFFLYGYGGTGKTFIWK-----TSLAVVRSKG 87
H ++ G D LYG GTGKT + K T+ A +R G
Sbjct: 564 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 701
>TC13844 similar to UP|Q949H4 (Q949H4) Leaf ubiquitous urease (Urea
amidohydrolase) , partial (16%)
Length = 603
Score = 24.3 bits (51), Expect = 3.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 33 TDMLLMLTDEQRCVHDKIMDSKGFDDGGFFFLYGYGGTG 71
T + + L ++C+HDK+ G+ +G Y G+G
Sbjct: 558 TKIYIQLLPRKKCIHDKV---NGYANGNSTIGYKLVGSG 451
>TC10909
Length = 569
Score = 24.3 bits (51), Expect = 3.3
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -3
Query: 56 FDDGGFFFLYGY 67
F+ G FFFL+GY
Sbjct: 537 FEHGNFFFLFGY 502
>AV769549
Length = 363
Score = 23.9 bits (50), Expect = 4.3
Identities = 9/27 (33%), Positives = 16/27 (58%)
Frame = -1
Query: 83 VRSKGLIVLNAASRVYREFYWQQTLYG 109
+ + I+LN + + EF+WQQ +G
Sbjct: 315 IHLRRFILLNWSPQRNHEFWWQQNCWG 235
>BP068601
Length = 518
Score = 23.5 bits (49), Expect = 5.6
Identities = 9/38 (23%), Positives = 19/38 (49%)
Frame = +1
Query: 10 PTFTNKLIVDELNYNKDELTKTQTDMLLMLTDEQRCVH 47
P + + L + E + T TDM +L+++ C++
Sbjct: 274 PEVVTQTVHQNLRHGTGECSSTITDMKFILSNQSFCIN 387
>TC16131 homologue to UP|MSI1_LYCES (O22466) WD-40 repeat protein MSI1,
partial (41%)
Length = 625
Score = 23.1 bits (48), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (58%), Gaps = 2/27 (7%)
Frame = +1
Query: 37 LMLTDEQRCVHDKIMDSKGFDD--GGF 61
LML Q +HD D++ +DD GGF
Sbjct: 340 LMLAQVQLPLHDSENDARHYDDDLGGF 420
>TC8962 homologue to UP|Q9M5M1 (Q9M5M1) 40S ribosomal protein S11, complete
Length = 1037
Score = 23.1 bits (48), Expect = 7.4
Identities = 8/26 (30%), Positives = 16/26 (60%)
Frame = +1
Query: 69 GTGKTFIWKTSLAVVRSKGLIVLNAA 94
G+G+ +W + L ++ KGL ++ A
Sbjct: 181 GSGRVLVWDSRLPEMQLKGLTLIRNA 258
>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (74%)
Length = 1060
Score = 23.1 bits (48), Expect = 7.4
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +1
Query: 62 FFLYGYGGTGKTFIWK 77
F LYG GTGK+++ K
Sbjct: 571 FLLYGPPGTGKSYLAK 618
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 23.1 bits (48), Expect = 7.4
Identities = 11/31 (35%), Positives = 15/31 (47%)
Frame = +1
Query: 47 HDKIMDSKGFDDGGFFFLYGYGGTGKTFIWK 77
H ++ + G LYG GTGKT + K
Sbjct: 448 HPELYEDIGIKPPKGVILYGEPGTGKTLLAK 540
>TC10748 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, partial
(21%)
Length = 550
Score = 22.7 bits (47), Expect = 9.6
Identities = 14/36 (38%), Positives = 16/36 (43%)
Frame = +2
Query: 53 SKGFDDGGFFFLYGYGGTGKTFIWKTSLAVVRSKGL 88
SKG GG FFL+G + T L R K L
Sbjct: 167 SKGITIGGAFFLFGGIAICGWIFFYTMLPETRGKTL 274
>TC13396
Length = 583
Score = 22.7 bits (47), Expect = 9.6
Identities = 11/30 (36%), Positives = 16/30 (52%), Gaps = 6/30 (20%)
Frame = +3
Query: 64 LYGYGGTGK------TFIWKTSLAVVRSKG 87
+YG G G +F W TSL+V+ + G
Sbjct: 276 MYGVGSGGADALLCPSFTWTTSLSVILATG 365
>TC17781
Length = 915
Score = 22.7 bits (47), Expect = 9.6
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = -2
Query: 2 PRPNTIDMPTFTNKLIVDELNYNKDELTKTQTDM 35
PR + P+F N + N N+ L TQTDM
Sbjct: 356 PRNPLVLAPSFQN*ITH*VPNINR*RLKSTQTDM 255
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,687,042
Number of Sequences: 28460
Number of extensions: 16831
Number of successful extensions: 76
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 109
length of database: 4,897,600
effective HSP length: 85
effective length of query: 24
effective length of database: 2,478,500
effective search space: 59484000
effective search space used: 59484000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)
Medicago: description of AC140721.12