TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140721.10 + phase: 0 /pseudo
         (329 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW720217                                                              171  2e-43
TC11235                                                                26  8.0
TC10375 similar to UP|Q7Q937 (Q7Q937) AgCP4363 (Fragment), parti...    26  8.0

>AW720217 
          Length = 539

 Score =  171 bits (432), Expect = 2e-43
 Identities = 85/96 (88%), Positives = 90/96 (93%)
 Frame = +2

Query: 1   MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
           MAS+QME IQKKLG+LNYPRANA AQSLLFAGMERY+L EWLFFRLLGDKSPFSQQNLQG
Sbjct: 203 MASRQMEEIQKKLGILNYPRANAPAQSLLFAGMERYSLLEWLFFRLLGDKSPFSQQNLQG 382

Query: 61  DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTH 96
           DALDRD+ET RIQYLAEIAKFLGITTTVD +AIQ H
Sbjct: 383 DALDRDDETPRIQYLAEIAKFLGITTTVDIEAIQGH 490


>TC11235 
          Length = 554

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 38  LFEWLFFRLLGDKSPFSQQNLQGDALDRDEETAR 71
           +FEW+ F LL   S +   N Q  A   D++ +R
Sbjct: 379 MFEWMIFNLLIASSKYHPPNDQTKAKSNDKKDSR 278


>TC10375 similar to UP|Q7Q937 (Q7Q937) AgCP4363 (Fragment), partial (6%)
          Length = 655

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -2

Query: 284 GSSETSGGPSSV----SRIISECESEMTVINRDLGILSASIARE 323
           GSS+ SG   S+    SR+IS   +  T  +  +G+L +SIA E
Sbjct: 357 GSSQLSGSEWSII*TSSRVISSSTTSET*CDCTVGVLLSSIASE 226


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.332    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,535,435
Number of Sequences: 28460
Number of extensions: 53076
Number of successful extensions: 260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of query: 329
length of database: 4,897,600
effective HSP length: 91
effective length of query: 238
effective length of database: 2,307,740
effective search space: 549242120
effective search space used: 549242120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)