TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140720.11 - phase: 0 
         (139 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9516 similar to UP|Q7SCF5 (Q7SCF5) Predicted protein, partial ...    47  9e-07
BP074886                                                               26  2.9
TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2...    26  2.9
TC12806 UP|O81120 (O81120) Nodule-specific protein Nlj70, complete     25  3.7
AV407941                                                               25  6.4
TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)         24  8.4

>TC9516 similar to UP|Q7SCF5 (Q7SCF5) Predicted protein, partial (54%)
          Length = 505

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 23/38 (60%), Positives = 29/38 (75%), Gaps = 1/38 (2%)
 Frame = +1

Query: 90  ASKKCGKLGKLLKESGNRGIQMKHRDFRA-PNPSPVKV 126
           ASKK GKLGKLLKE G  G+ +KH+D RA  + +P+KV
Sbjct: 1   ASKKFGKLGKLLKERGTHGVHLKHKDSRATSSDTPIKV 114


>BP074886 
          Length = 419

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 11  TVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLKSENGM 57
           T +  RPG+   +IY+  +AH V+ S+  HY   +V   TL    G+
Sbjct: 372 TRIQKRPGHSWLKIYFMKTAHLVL*SS--HYTRSLVKDQTLH*VQGL 238


>TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2,2, partial
           (94%)
          Length = 1199

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 97  LGKLLKESGNRGIQMKHRDFRAPNPSPV 124
           + K ++    RG Q+ H+D+  P P+P+
Sbjct: 84  MAKDIETEAPRGDQLAHKDYHDPPPAPL 167


>TC12806 UP|O81120 (O81120) Nodule-specific protein Nlj70, complete
          Length = 2069

 Score = 25.4 bits (54), Expect = 3.7
 Identities = 11/38 (28%), Positives = 18/38 (46%)
 Frame = +3

Query: 3   NCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGH 40
           NC++  +A V++HR   +    Y   S  +     PGH
Sbjct: 390 NCKSPRVAPVLVHRYWKQFSLFYQHCSYGDQRKEFPGH 503


>AV407941 
          Length = 339

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = +3

Query: 103 ESGNRGIQMKHRDFRAPNPSPVKVIKFHVNVNVTEKN 139
           E  + G Q+KH+  +  NP+   V+   V  + T+KN
Sbjct: 228 EDQSSGFQIKHKFEKVKNPTVPSVLFDGVAKDTTQKN 338


>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
          Length = 826

 Score = 24.3 bits (51), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 117 RAPNPSPVKVIKF 129
           R PNP+P++ IKF
Sbjct: 134 RGPNPNPIEFIKF 172


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,339,542
Number of Sequences: 28460
Number of extensions: 27580
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of query: 139
length of database: 4,897,600
effective HSP length: 81
effective length of query: 58
effective length of database: 2,592,340
effective search space: 150355720
effective search space used: 150355720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)