TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140670.5 + phase: 0 /pseudo/partial
         (181 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12407 similar to UP|Q7XA68 (Q7XA68) At1g01640, partial (83%)        234  8e-63
TC16729 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D...    28  0.70
AV769926                                                               28  1.2
TC8916 PIR|S61423|S61423 inorganic diphosphatase  (clone TVP9) -...    28  1.2
TC15085 similar to UP|R1AD_ARATH (Q9FKC0) 60S ribosomal protein ...    27  1.6
TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, ...    27  1.6
TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri...    27  1.6
BP070302                                                               27  2.0
TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding ...    27  2.7
TC13523 homologue to UP|R1AD_ARATH (Q9FKC0) 60S ribosomal protei...    27  2.7
TC8648 similar to UP|Q93Y55 (Q93Y55) Delta-1-pyrroline-5-carboxy...    26  4.5
TC16625 similar to UP|RS12_BUCBP (Q89A65) 30S ribosomal protein ...    26  4.5
AV421981                                                               25  5.9
AV408295                                                               25  5.9
BP029370                                                               25  5.9
TC15617 similar to GB|AAN28738.1|23505757|AY143799 At2g02050/F14...    25  5.9
TC10116 similar to GB|AAO63429.1|28951011|BT005365 At4g25620 {Ar...    25  5.9

>TC12407 similar to UP|Q7XA68 (Q7XA68) At1g01640, partial (83%)
          Length = 943

 Score =  234 bits (596), Expect = 8e-63
 Identities = 124/181 (68%), Positives = 136/181 (74%), Gaps = 15/181 (8%)
 Frame = +3

Query: 1   RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
           +AAAG++RI LDGLRWRVFDAKGQ+LGRLASQIATVV GKDKPTY PNRDDGDMCIVLNA
Sbjct: 144 KAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNA 323

Query: 61  KDIAVTGRKLTDKVYYWHTG-----KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVM---- 111
           KD+ VTGRK  DKVYYWHTG     K+       +TL+   AK      +K    M    
Sbjct: 324 KDVCVTGRKFKDKVYYWHTGYVGGLKQ-------RTLKEQMAKDPTEVIRKAILRMLPRN 482

Query: 112 ------DRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENA 165
                 DRKLRIFPGSEHPF DRPLE Y MPPR+VREMRPRARRAMIRAQKKAEQQQ+ A
Sbjct: 483 KLRDDRDRKLRIFPGSEHPFADRPLEQYEMPPRSVREMRPRARRAMIRAQKKAEQQQQKA 662

Query: 166 E 166
           +
Sbjct: 663 D 665


>TC16729 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
           {Arabidopsis thaliana;}, partial (8%)
          Length = 1180

 Score = 28.5 bits (62), Expect = 0.70
 Identities = 16/44 (36%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
 Frame = +1

Query: 122 EHPFGDRPL---EPYVMPPRTVREMRPRARRAMIRAQKKAEQQQ 162
           EHP  D       P  M PR+V  + P + R    AQ++ +QQQ
Sbjct: 241 EHPLRDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAQREKQQQQ 372


>AV769926 
          Length = 280

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 14/38 (36%), Positives = 19/38 (49%)
 Frame = +3

Query: 112 DRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARR 149
           D  LR FPG    F D  L+P+     T RE+  + +R
Sbjct: 78  DPALRSFPGVFAEFADSSLDPHAWTITTPREIEAKHKR 191


>TC8916 PIR|S61423|S61423 inorganic diphosphatase  (clone TVP9) - common   
                       tobacco {Nicotiana tabacum;}  , partial
           (15%)
          Length = 719

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 124 PFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNA 171
           P G R L   +  P+      PR  +  +   + A Q+QEN ++ Q A
Sbjct: 190 PLGPRSLHAQMHQPQCTS*HYPRHHQCWMLILRSARQKQENQQEHQKA 47


>TC15085 similar to UP|R1AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4,
           complete
          Length = 1187

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 18  VFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYY 76
           V DA+  +LGRLAS +A  ++            +G   +V+  ++I ++G  +  K+ Y
Sbjct: 94  VVDARHHMLGRLASIVAKELL------------NGQKVVVVRCEEICISGGLVRQKMKY 234


>TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, partial
           (57%)
          Length = 1280

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 138 RTVREMRPRARRAMIRAQK---KAEQQQENAEQRQNAEEMKNSKK 179
           R  RE R + R   ++A +   KAE++ + AE++  AEE  N KK
Sbjct: 328 RAAREKRKKKREEELKASEEKAKAEKRLKEAEKKPKAEE--NDKK 456


>TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
           factor 17 (WRKY DNA-binding protein 17), partial (53%)
          Length = 1284

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (46%)
 Frame = +2

Query: 123 HPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEE 173
           HP G R  E   +   +V+E  PRA R  +R Q +    QE  E  +  ++
Sbjct: 548 HPGGLRRREASPLINNSVQEKVPRALRRSLRLQHQVPLHQEKEESGEEDDK 700


>BP070302 
          Length = 501

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
 Frame = -3

Query: 101 CA*FQKTTYVMDRKLRIFPGSEHPFGDRPLE--PYVMP 136
           CA*FQ    V+     +FP  +HP+    LE  P+++P
Sbjct: 478 CA*FQVHDIVLLLTASLFPNIQHPYPAASLECMPHLLP 365


>TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding protein A,
           partial (9%)
          Length = 562

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 15/46 (32%), Positives = 18/46 (38%)
 Frame = -2

Query: 109 YVMDRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRA 154
           Y ++   R  P    P G R L P  +PPR      P A     RA
Sbjct: 468 YTVNHSPRPLPAPLRPLGPRALPPRPLPPRAPSAGAPSAGAPSPRA 331


>TC13523 homologue to UP|R1AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4,
           partial (52%)
          Length = 351

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 18  VFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYY 76
           V DA+  +LGRLAS +A  ++            +G   +V+  ++I ++G  +  K+ Y
Sbjct: 62  VVDARHHMLGRLASIVAKELL------------NGQKVVVVRCEEICMSGGLVRQKMKY 202


>TC8648 similar to UP|Q93Y55 (Q93Y55) Delta-1-pyrroline-5-carboxylate
           dehydrogenase  , partial (88%)
          Length = 1689

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 114 KLRIFPGSEHPFGDRPLEPYVMP 136
           KL   PGS+  FG RPLE + +P
Sbjct: 969 KLLEIPGSKLLFGGRPLEDHSIP 1037


>TC16625 similar to UP|RS12_BUCBP (Q89A65) 30S ribosomal protein S12,
           partial (13%)
          Length = 814

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 52  GDMCIVLNAKDIAVTGRKLTDKVY-YWHTGKEL*RIRWPKTLQMLFAKLFCA*FQKT 107
           GD+C +LN +D    G     K++ +W        IR  K    LF  LFC *F  T
Sbjct: 292 GDLCWILNFRDSFCRG-----KIHIHW--------IRIQKAYIPLFFSLFCC*FHIT 423


>AV421981 
          Length = 468

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 121 SEHPFGDRPLEPYV---MPPRTV 140
           ++HPF D+PL P +   +PP T+
Sbjct: 105 NDHPFPDQPLHPTLLRHLPPPTI 173


>AV408295 
          Length = 426

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 12/45 (26%), Positives = 25/45 (54%), Gaps = 1/45 (2%)
 Frame = +1

Query: 136 PPRTVRE-MRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKK 179
           PPR     +RPR  +  ++ QKK  ++++  +QR+    +K  ++
Sbjct: 118 PPRPRHHPLRPRRTKLQLQLQKKK*KKKKRRKQRKKRNLLKKRRR 252


>BP029370 
          Length = 364

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 152 IRAQKKAEQQQENAEQRQNAEEMKNSK 178
           I  Q++ +QQQE  +Q+Q    +KN K
Sbjct: 165 IDIQQQQQQQQEQQQQQQQ*HHLKNHK 245


>TC15617 similar to GB|AAN28738.1|23505757|AY143799 At2g02050/F14H20.12
           {Arabidopsis thaliana;}, partial (85%)
          Length = 573

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 15/30 (49%)
 Frame = +2

Query: 134 VMPPRTVREMRPRARRAMIRAQKKAEQQQE 163
           V+PP  VRE  P  R   +RA+   +   E
Sbjct: 182 VLPPMEVRERTPLLREVRVRARHGTDASDE 271


>TC10116 similar to GB|AAO63429.1|28951011|BT005365 At4g25620 {Arabidopsis
           thaliana;}, partial (7%)
          Length = 838

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 73  KVYYWHTGKEL*RIRWPKTL 92
           +VY + T ++L R+ WPKTL
Sbjct: 162 QVYCFETYQDLPRVYWPKTL 221


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,586,968
Number of Sequences: 28460
Number of extensions: 28922
Number of successful extensions: 201
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of query: 181
length of database: 4,897,600
effective HSP length: 85
effective length of query: 96
effective length of database: 2,478,500
effective search space: 237936000
effective search space used: 237936000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)