BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140670.16 + phase: 0
(235 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12403 similar to UP|Q8L8G6 (Q8L8G6) Histone acetyltransferase ... 208 4e-62
AW428883 35 0.011
TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose... 31 0.21
TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%) 30 0.28
AV417320 30 0.47
AV421932 29 0.62
TC18881 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose... 29 0.62
BI420780 29 0.81
CN824947 28 1.1
TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 28 1.4
BP029067 28 1.4
TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 28 1.4
CB828977 28 1.8
TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, ... 28 1.8
AV766688 28 1.8
TC20215 similar to AAS10104 (AAS10104) MYB transcription factor,... 28 1.8
AV765478 27 3.1
BP066705 27 4.0
AV779158 27 4.0
NP675421 transcription factor MYB103 [Lotus japonicus] 27 4.0
>TC12403 similar to UP|Q8L8G6 (Q8L8G6) Histone acetyltransferase complex
component, partial (19%)
Length = 444
Score = 208 bits (530), Expect(2) = 4e-62
Identities = 89/107 (83%), Positives = 101/107 (94%)
Frame = +1
Query: 45 TDGKVSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLS 104
+DGK SLYHCNYC+KDISGKIRIKCAVCQDFDLCIECFSVGVE+TPHK NHPYR+MDNLS
Sbjct: 124 SDGKASLYHCNYCHKDISGKIRIKCAVCQDFDLCIECFSVGVEVTPHKCNHPYRIMDNLS 303
Query: 105 FPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 151
FPLICPDW+A+EEMLLLE + YGFGNW++VA+ +GTKSK+QCIDHY
Sbjct: 304 FPLICPDWNADEEMLLLEGIGTYGFGNWSEVAEYVGTKSKAQCIDHY 444
Score = 45.8 bits (107), Expect(2) = 4e-62
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = +3
Query: 1 MGRCCRAASRSSPIAADDNRSKRKKVALNADNLETSSA 38
MGRC RAASRS A DD RSK+KK LN +NLETSSA
Sbjct: 9 MGRC-RAASRS---ADDDPRSKKKKATLNVENLETSSA 110
>AW428883
Length = 430
Score = 35.0 bits (79), Expect = 0.011
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADN-IGTKSKSQCIDHYNTVYV 156
W+ EE L L LD YG G+W ++ N + T++ +Q H ++
Sbjct: 139 WTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 276
>TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose-responsive
element binding factor, partial (50%)
Length = 487
Score = 30.8 bits (68), Expect = 0.21
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 92 KSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
+SN+P R + + P WSAEE+ +L ++ +G NW+ ++ I +S C
Sbjct: 137 RSNNPNRP-ERIKGP-----WSAEEDRILTRLVERHGARNWSLISRYIKGRSGKSC 286
>TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%)
Length = 532
Score = 30.4 bits (67), Expect = 0.28
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTK 142
W+ EE+++L+ + +G G WN +A + G K
Sbjct: 120 WTIEEDLILINYIANHGEGVWNTLAKSAGLK 212
>AV417320
Length = 369
Score = 29.6 bits (65), Expect = 0.47
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIG 140
W++EE+ +L+ + +G GNW + + G
Sbjct: 126 WTSEEDQILISYIQKHGHGNWRALPKHAG 212
>AV421932
Length = 402
Score = 29.3 bits (64), Expect = 0.62
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +3
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIG 140
WS EE+ L+ + +G+G W++V + G
Sbjct: 126 WSPEEDEKLIRYITTHGYGCWSEVPEKAG 212
>TC18881 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose-responsive
element binding factor, partial (28%)
Length = 346
Score = 29.3 bits (64), Expect = 0.62
Identities = 15/52 (28%), Positives = 24/52 (45%)
Frame = +1
Query: 96 PYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
P MD + P WS EE+ L + ++G NW ++ +I +S C
Sbjct: 31 PLSQMDRVKGP-----WSPEEDEALTRLVQVHGPKNWTAISKSIPGRSGKSC 171
>BI420780
Length = 475
Score = 28.9 bits (63), Expect = 0.81
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 3/43 (6%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGT---KSKSQCIDHY 151
WS+EE+ LL + YG WN V+ + T + C++ +
Sbjct: 211 WSSEEDALLHAYVQQYGPREWNLVSQRMNTPLNRDTKSCLERW 339
>CN824947
Length = 738
Score = 28.5 bits (62), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIG 140
W+AEE+ LL + + G G+W + N G
Sbjct: 199 WTAEEDELLTKYIQASGEGSWRSLPKNAG 285
>TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (36%)
Length = 1778
Score = 28.1 bits (61), Expect = 1.4
Identities = 14/48 (29%), Positives = 25/48 (51%)
Frame = +1
Query: 100 MDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
MD + P WS EE+ L + ++ +G NW+ ++ +I +S C
Sbjct: 172 MDRIKGP-----WSPEEDEALQKLVERHGPRNWSLISKSIPGRSGKSC 300
>BP029067
Length = 477
Score = 28.1 bits (61), Expect = 1.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 168 HFSGKNKEELLAMAKGNQVKKGLLLNDLNYSLCRFCMLELVTLFYSMNLKTCYVT 222
HF G+++ + L+ A G + K+ L + + LCRF L L C +T
Sbjct: 427 HF*GEDERKTLSAAAGFERKENFLFSHSSVFLCRFVSSSLFLLSAWFLYYYCMIT 263
>TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (43%)
Length = 860
Score = 28.1 bits (61), Expect = 1.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 89 TPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQC 147
T +N MD + P WS EE+ L ++ +G NW+ ++ +I +S C
Sbjct: 33 TNTNTNTSITKMDRIKGP-----WSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSC 194
>CB828977
Length = 528
Score = 27.7 bits (60), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDV 135
W+AEEE L + YG G W ++
Sbjct: 73 WTAEEEDALHRGVQKYGAGKWKNI 144
>TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, partial
(30%)
Length = 1353
Score = 27.7 bits (60), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNWNDV 135
W+AEEE L + YG G W ++
Sbjct: 121 WTAEEEDALHRGVQKYGAGKWKNI 192
>AV766688
Length = 608
Score = 27.7 bits (60), Expect = 1.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDL--SHF 169
W+AEE+ L+ + YG NW + G ++C ++N + PD+ HF
Sbjct: 125 WTAEEDRKLIAYVTRYGCWNWRQLPKFAGL---ARCGKSCRLRWLN---YLRPDIKRGHF 286
Query: 170 SGKNKEELLAMAK 182
+ + +E ++ M K
Sbjct: 287 TQEEEEIIIRMHK 325
>TC20215 similar to AAS10104 (AAS10104) MYB transcription factor, partial
(35%)
Length = 464
Score = 27.7 bits (60), Expect = 1.8
Identities = 10/29 (34%), Positives = 16/29 (54%)
Frame = +2
Query: 112 WSAEEEMLLLEALDMYGFGNWNDVADNIG 140
WS EE+ +L + + G G+W + N G
Sbjct: 77 WSEEEDKILTDFIKQNGEGSWKSLPKNAG 163
>AV765478
Length = 357
Score = 26.9 bits (58), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 161 FPVPDLSHFSGKNKEELLAMAKGNQVKKGL 190
F VP LS ++ +LA KGN + KG+
Sbjct: 85 FQVPTLSSIKNNSRN*ILAKIKGNPMMKGI 174
>BP066705
Length = 511
Score = 26.6 bits (57), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 1/28 (3%)
Frame = +3
Query: 42 GITTDGKVSLYHCNYCNKDIS-GKIRIK 68
GI D + CNYC K +S G+ R+K
Sbjct: 243 GIAQDERKKKVRCNYCGKIVSGGRYRLK 326
>AV779158
Length = 424
Score = 26.6 bits (57), Expect = 4.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 139 IGTKS-KSQCIDHYNTVY--VNSPCFPVPDLSHFS 170
+G K+ + CI ++T Y VN PC +P HFS
Sbjct: 108 VGVKAIAAYCIPFFSTCYEVVNVPCDIIPSKVHFS 4
>NP675421 transcription factor MYB103 [Lotus japonicus]
Length = 924
Score = 26.6 bits (57), Expect = 4.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 112 WSAEEEMLLLEALDMYGFGNW 132
WS EE+ +L++ + +G G+W
Sbjct: 49 WSQEEDKVLVDYIQKHGHGSW 111
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,209,390
Number of Sequences: 28460
Number of extensions: 78539
Number of successful extensions: 451
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of query: 235
length of database: 4,897,600
effective HSP length: 87
effective length of query: 148
effective length of database: 2,421,580
effective search space: 358393840
effective search space used: 358393840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC140670.16