BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.7 + phase: 0
(985 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11884 77 1e-14
CB828260 74 9e-14
BP038017 66 2e-11
TC13387 61 8e-10
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 43 2e-04
CN825057 43 2e-04
TC11298 similar to UP|Q9SGA5 (Q9SGA5) F1C9.14 protein, partial (... 39 0.003
AV425218 39 0.004
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 38 0.009
BP072692 38 0.009
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 36 0.034
TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cu... 35 0.076
TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (... 34 0.13
TC15506 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich prote... 33 0.17
BP039723 33 0.22
TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like... 33 0.22
BP058233 33 0.29
BI418940 32 0.38
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 32 0.38
BP066038 29 3.2
>TC11884
Length = 557
Score = 77.0 bits (188), Expect = 1e-14
Identities = 48/139 (34%), Positives = 68/139 (48%)
Frame = +1
Query: 462 HLGCRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLLLQFTAIQTSFGQNVCVLEHR 521
H G T+NR E AHA LKK L + GDL T W+ H + + T I SF +++ ++H
Sbjct: 1 HFGTTTSNRAEGAHASLKKMLRDCKGDLATSWDASHSLTCNRHTEILASFERSIHRIDHI 180
Query: 522 FKDVTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKL 581
F Y+ + G VS L + E R + C C+ R ++ LPC CE+A
Sbjct: 181 FM-CPFYTNIRGFVSNKCLQLLDAEHIRMK-----SYGRCDCLLRETHELPCGCELA--- 333
Query: 582 LQEKPILLDEIYHHWLRLS 600
+ I + IY W RLS
Sbjct: 334 -GYERISYEAIYPFWKRLS 387
>CB828260
Length = 557
Score = 74.3 bits (181), Expect = 9e-14
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +3
Query: 107 LVCERSGSHIVPKKKPKHANTGSRKCGCLFMISGYQSKQ--TKEWGLNILNGVHNHPMEP 164
L CE+ G ++ + T ++K C F + G K ++W L ++ G HNH
Sbjct: 192 LGCEKHGKYVPYRDPDLVEGTRTQKTECPFRLKGRPMKNGTDRDWRLKVMEGAHNHEPAR 371
Query: 165 ALEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLKNQRPHCMTNVKQVYNERQQIWKA 224
+L GH GRL ++K+ V ++KS +LPR +L+ LK P +T + Q+Y +++ K+
Sbjct: 372 SLLGHNFVGRLNSEEKEQVEKMSKSWVLPRKMLLTLKENNPLNLTTISQIYGACKRLRKS 551
Query: 225 NR 226
R
Sbjct: 552 LR 557
>BP038017
Length = 570
Score = 66.2 bits (160), Expect = 2e-11
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Frame = +2
Query: 228 DKKPLQFLISKLEEHNYTYYSRTQLES-NTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKT 286
D + L K++ N +Y QL+ N + ++FWA S +N F ++ D+ Y+
Sbjct: 167 DAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYNYFGDAVIFDTMYRP 346
Query: 287 NMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLTMLRKLLSSKMNMHKV-IVTD 345
N Y++P GV G + E E +F W + R LS+ + V I TD
Sbjct: 347 NQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTW---LFRTWLSAMNDRPPVSITTD 517
Query: 346 RDMSLMKAVAHVFPES 361
+D ++ AVA VFPE+
Sbjct: 518 QDRAIQAAVAQVFPET 565
>TC13387
Length = 511
Score = 61.2 bits (147), Expect = 8e-10
Identities = 29/90 (32%), Positives = 51/90 (56%)
Frame = +1
Query: 827 DKWLTFPDMGHIVANYYKMCVVVLTNLEVGKSESFFPLRGPPPPGNQKTPILCLGAIPNH 886
DKW+ P+MG++VA ++ VV ++ S+ PLRG PP + ++ +G + NH
Sbjct: 7 DKWMQLPEMGYLVATRFQ---VVFISISFQGCWSYLPLRGEGPPPVHR--VIAIGHVINH 171
Query: 887 FVLISLKNGCPLPPLSTEWHNHKKEDAVTW 916
FV + L G +PP++ +W + +V+W
Sbjct: 172 FVQLHLTLGHSMPPIALQWERYVDPISVSW 261
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 43.1 bits (100), Expect = 2e-04
Identities = 20/62 (32%), Positives = 31/62 (49%)
Frame = +2
Query: 232 LQFLISKLEEHNYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNMYRM 291
L +L K + +Y T+ ++E++FW S +N F V+ DSTYK N Y
Sbjct: 164 LSYLEGKADNDPMFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNK 343
Query: 292 PM 293
P+
Sbjct: 344 PL 349
>CN825057
Length = 721
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/163 (22%), Positives = 67/163 (40%), Gaps = 7/163 (4%)
Frame = +1
Query: 144 KQTKEWGLNILNGVHNHPMEPALEGHILAGR-LKEDDKKIVRDLTKSKMLPRNILIHLKN 202
K +W ++ HNH + PAL H R +K +K + L R + + +
Sbjct: 208 KPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNMDILHAVSERTRKMYVEMSR 387
Query: 203 QRPHCMTNVKQVYNERQQIWKA-----NRGDKKPLQFLISKLEEHNYTYYSRTQL-ESNT 256
Q C+ V + Q K + GD + + +++ N ++ L E
Sbjct: 388 QSGGCLNIESLVGDLNDQFKKGQYLAMDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQR 567
Query: 257 IEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNMYRMPMFEVVGV 299
+ +IFW SI + +F V+ D++Y + ++P VGV
Sbjct: 568 LRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVGV 696
>TC11298 similar to UP|Q9SGA5 (Q9SGA5) F1C9.14 protein, partial (63%)
Length = 645
Score = 39.3 bits (90), Expect = 0.003
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +3
Query: 754 VDVIGDGHCGFRAIAEFMGLTEKNHLMIRTHLIQELMDHRDDY 796
V V GDG+C FRA+++ + + ++H +R ++++L DHR Y
Sbjct: 474 VRVSGDGNCQFRALSDQLYRSPEHHKHVRKEIVRQLKDHRSLY 602
>AV425218
Length = 419
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/122 (22%), Positives = 52/122 (41%)
Frame = +2
Query: 292 PMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLTMLRKLLSSKMNMHKVIVTDRDMSLM 351
P+ +VGV + G ++ E E+FVW+ L +S + I+TD ++
Sbjct: 5 PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGV--PPQGIITDHSEAMK 178
Query: 352 KAVAHVFPESYALNCFFHVQANVKQRCVLNCKYPLGFKKDGKEVSNRDVVKKIMNAWKAM 411
KA+ V P + C ++ + Q+ + +Y V + V+ + WK +
Sbjct: 179 KAIETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKI 358
Query: 412 VE 413
VE
Sbjct: 359 VE 364
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 37.7 bits (86), Expect = 0.009
Identities = 32/103 (31%), Positives = 42/103 (40%)
Frame = +2
Query: 641 LAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSP 700
L F T L + P TK + I+ + K TST+ P+S +PSPSP
Sbjct: 26 LHFQSTILPNKPLHSTLTKPPSQ---ISSNPNKTTSTTSSPTS--------TTPKPSPSP 172
Query: 701 TTSSYKRKKGARLGKTSLSPLPPPTRYPKPKAIPVMRPIDYMP 743
SS R + S SP PT+ PKP + P P
Sbjct: 173 APSSTLRAPSS--SPASASPASSPTKSPKPSSPSASAPPSSTP 295
Score = 32.0 bits (71), Expect = 0.49
Identities = 25/91 (27%), Positives = 35/91 (37%), Gaps = 1/91 (1%)
Frame = +2
Query: 641 LAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITS-TSRIPSSWEVVDSQNPDSQPSPS 699
L P ++ S P PTK K A + T T +S + + S SP+
Sbjct: 188 LRAPSSSPASASPASSPTKSPKPSSPSASAPPSSTPLTPSTATSESSPTATSSSSSASPA 367
Query: 700 PTTSSYKRKKGARLGKTSLSPLPPPTRYPKP 730
P TS + L + SP PP + P P
Sbjct: 368 PPTSFSALSRALELKALASSPSPPSSPPPSP 460
>BP072692
Length = 422
Score = 37.7 bits (86), Expect = 0.009
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 651 PPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSPTTSSYKRKKG 710
PPPR ++++ S S+S PS+ + S P S PSPSP+TSS
Sbjct: 167 PPPRP-----HRRQLTATTSSSATPSSSPTPSAAPPLSSP-PSSTPSPSPSTSS------ 310
Query: 711 ARLGKT-SLSPLPPPTRYPKPKAIPVMRPIDYMP 743
+++G SP PP+R +P P P P
Sbjct: 311 SKVGPDFPFSPTHPPSRSSQPPTPPSSTPTSDPP 412
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 35.8 bits (81), Expect = 0.034
Identities = 21/93 (22%), Positives = 41/93 (43%)
Frame = +1
Query: 232 LQFLISKLEEHNYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYKTNMYRM 291
LQ+ KL E++ Y++ + + I ++FW + + F ++ +DSTY T+
Sbjct: 58 LQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYCTHSSNR 237
Query: 292 PMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWV 324
P+ G G + E E++ W+
Sbjct: 238 PLAVFSGFNHHRKAVIFGAALLYDETTESY*WL 336
>TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber
hypocotyls (Arabinogalactan protein), partial (32%)
Length = 760
Score = 34.7 bits (78), Expect = 0.076
Identities = 26/86 (30%), Positives = 37/86 (42%), Gaps = 5/86 (5%)
Frame = +1
Query: 650 SPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQ-PSPSPTTSSYKRK 708
SPPP VP V + S+ P+ + P ++ P+P+P+ S K K
Sbjct: 127 SPPPAPVPVASPPAPVPV--------SSPPAPAPTTPAPAVTPTAEVPAPAPSKSKKKVK 282
Query: 709 KGARLGKTSLSPL----PPPTRYPKP 730
KG + G + SPL PP P P
Sbjct: 283 KGKKHGAPAPSPLLGPPAPPVGAPGP 360
>TC13829 similar to UP|P93321 (P93321) Cdc2MsD protein, partial (43%)
Length = 515
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 646 TTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSPTTSSY 705
T + P R P K + + ++R K ++ R PS+ ++P S+ SP+P+TSS
Sbjct: 125 TAKSTKPKRNPPAKSSLSRKPVSRWTKK--ASLRPPSA------KSPSSRCSPNPSTSSA 280
Query: 706 KRKKGARL---GKTSLSPLPPPT 725
K T+ +P PPPT
Sbjct: 281 SSKSSTSTKPPKTTTTTPPPPPT 349
>TC15506 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein, partial
(24%)
Length = 677
Score = 33.5 bits (75), Expect = 0.17
Identities = 33/124 (26%), Positives = 46/124 (36%), Gaps = 19/124 (15%)
Frame = +2
Query: 631 KLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPS-------- 682
+L G R+ P SPPPR+ + + + RS+ I +R S
Sbjct: 14 RLRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRSRSPIRRPARSNSRSFSPRRG 193
Query: 683 --------SWEVVDSQNPDSQPSPSPTTSSYKRKKGARL---GKTSLSPLPPPTRYPKPK 731
S DS +P S + S + +G R +S SP PPP KP
Sbjct: 194 RPPVRRGRSSSFSDSPSPRKVSRRSRSRSPRRPLRGGRASSNSSSSSSPPPPPPPARKP* 373
Query: 732 AIPV 735
IPV
Sbjct: 374 RIPV 385
>BP039723
Length = 587
Score = 33.1 bits (74), Expect = 0.22
Identities = 23/87 (26%), Positives = 35/87 (39%), Gaps = 2/87 (2%)
Frame = -2
Query: 669 RSKGKIT--STSRIPSSWEVVDSQNPDSQPSPSPTTSSYKRKKGARLGKTSLSPLPPPTR 726
R+ G++ S PS + S P+ PSP + + A S +P P
Sbjct: 514 RNSGRVLLQQISEPPSPGPAIGSPTPNLPPSPESGFAPASQPSPAPSSGPSSTPSPASAP 335
Query: 727 YPKPKAIPVMRPIDYMPRFMVPFIEKV 753
PKP +P + P + P+ P E V
Sbjct: 334 SPKP-LVPHLPPSSFFPKLTPPAAEDV 257
>TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
partial (61%)
Length = 989
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/73 (24%), Positives = 30/73 (40%)
Frame = +2
Query: 644 PETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSPTTS 703
PE SP P P + A ++ S +P+S + PD P+ +P+T+
Sbjct: 482 PELFAKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPAPAGETPDGAPADAPSTA 661
Query: 704 SYKRKKGARLGKT 716
+ + G G T
Sbjct: 662 AERSTSGKSAGVT 700
>BP058233
Length = 548
Score = 32.7 bits (73), Expect = 0.29
Identities = 29/111 (26%), Positives = 40/111 (35%), Gaps = 11/111 (9%)
Frame = +3
Query: 639 RQLAFPETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSP 698
R+++ P T +P P P ++ TS S W+ P
Sbjct: 210 RRISAPTTRSANPAPCCKPCSSPRRGA---------TSPSSPKPPWKRSXQHRPPPSARS 362
Query: 699 SPTTSSYKR--------KKGARLGKTSLSPL---PPPTRYPKPKAIPVMRP 738
SP+TSS R A G TS+SP PPP P++ P P
Sbjct: 363 SPSTSSAPRASPPISGTPSAAASGTTSISPTPTSPPPPSPSSPRSRPTXLP 515
>BI418940
Length = 550
Score = 32.3 bits (72), Expect = 0.38
Identities = 26/95 (27%), Positives = 40/95 (41%), Gaps = 1/95 (1%)
Frame = +3
Query: 646 TTLMSPPPRKVP-TKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSPTTSS 704
TT SPPP P T A + + + T+T+ + + +P + P+P+ +SS
Sbjct: 123 TTASSPPPTPAPATSSA*EHS*L*QPHLSSTATA--------LPTPSPATTPTPTNPSSS 278
Query: 705 YKRKKGARLGKTSLSPLPPPTRYPKPKAIPVMRPI 739
K TS + PPPT P P P+
Sbjct: 279 L*EKSKHFCSTTSAASYPPPTPAPATTQTPTTPPL 383
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 32.3 bits (72), Expect = 0.38
Identities = 22/91 (24%), Positives = 34/91 (37%)
Frame = +1
Query: 644 PETTLMSPPPRKVPTKGAKKKVDIARSKGKITSTSRIPSSWEVVDSQNPDSQPSPSPTTS 703
P T ++ P P+ K A + + S + +P + PSPSP ++
Sbjct: 145 PSPTKVTENPPTAPSTSTKSPTSSASEEPSPPNPSTSTTQQPKHSPTSPPASPSPSPPST 324
Query: 704 SYKRKKGARLGKTSLSPLPPPTRYPKPKAIP 734
K + S SPL +P P A P
Sbjct: 325 ----KPPTAMASPSTSPLSATKSHPTPPAAP 405
>BP066038
Length = 445
Score = 29.3 bits (64), Expect = 3.2
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 676 STSRIPSSWEVVD--SQNPDSQPSPSPTTSSYKRKKGARLGKTSLSPLPPPTRYPKPKAI 733
ST PSS + S NP S PSP++SS R K + S S PP + P P
Sbjct: 73 STYHTPSSPPISRQ*SPNPASSTXPSPSSSSSARGKXSX--P*SPSGFPPSSISPAPSXA 246
Query: 734 P 734
P
Sbjct: 247 P 249
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,914,484
Number of Sequences: 28460
Number of extensions: 301797
Number of successful extensions: 2307
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 2103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2252
length of query: 985
length of database: 4,897,600
effective HSP length: 99
effective length of query: 886
effective length of database: 2,080,060
effective search space: 1842933160
effective search space used: 1842933160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC140549.7