BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.12 - phase: 0
(504 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV768096 45 2e-05
AV417881 32 0.24
BP047811 32 0.32
TC13505 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, par... 32 0.32
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 30 0.71
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ... 30 0.92
TC17861 30 0.92
TC14113 similar to UP|O82161 (O82161) Phi-1 protein, partial (87%) 30 0.92
AW720061 30 1.2
BP041089 30 1.2
TC9608 similar to UP|Q94AZ4 (Q94AZ4) At1g12310/F5O11_2, partial ... 29 1.6
TC17871 similar to UP|Q7UMK2 (Q7UMK2) Probable transcription ter... 29 1.6
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 29 1.6
BP049273 29 2.1
BF177561 29 2.1
BI417550 28 2.7
TC9305 weakly similar to UP|Q7XL02 (Q7XL02) OJ000315_02.15 prote... 28 2.7
TC13640 similar to UP|Q9LN84 (Q9LN84) T12C24.16, partial (16%) 28 2.7
TC9328 similar to UP|AAR85480 (AAR85480) ANTHER INDEHISCENCE1, p... 28 2.7
>AV768096
Length = 358
Score = 45.4 bits (106), Expect = 2e-05
Identities = 23/115 (20%), Positives = 51/115 (44%)
Frame = +3
Query: 98 KSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAV 157
K L +K + + W + D + F+ F A +++ GPW I + L++
Sbjct: 12 KVLNKLAVKQTIVRAWGNLQDLQVGDLNLNTFLFTFSDANLATRILAEGPWNIMGNLLSL 191
Query: 158 THWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLK 212
W P+ + + W +F GL + + + + +A+A+G ++++ +K
Sbjct: 192 QFWDPQISMAEVHFNLVPFWTQFHGLPMEFMSLTNVSKLAAAVGNLLEIEDPKMK 356
>AV417881
Length = 431
Score = 32.0 bits (71), Expect = 0.24
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = +3
Query: 259 YGHLGRNCMEKPSTFDPRSPNHHTAGGNNPPSNPEPSQPRQNPTQTCPDA 308
YG G PS P+S N H A NP S P PS PT A
Sbjct: 24 YGSSGAAVHPTPSASTPQSSNPHKAT-TNPLSTPSPSSKTSEPTSASSPA 170
>BP047811
Length = 473
Score = 31.6 bits (70), Expect = 0.32
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 3/36 (8%)
Frame = -3
Query: 149 LIFDHCLAVTHWTPE---FASPNAKVDRTVVWVRFP 181
L+F+ CL V+H T + F S N T+ W+RFP
Sbjct: 321 LLFNWCLTVSHGTTKVEIFISQNVISPCTICWIRFP 214
>TC13505 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (7%)
Length = 359
Score = 31.6 bits (70), Expect = 0.32
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 288 PPSNPEPSQPRQNPTQTCP 306
PPS P PSQP PT CP
Sbjct: 169 PPSPPPPSQPPPTPTSNCP 225
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 30.4 bits (67), Expect = 0.71
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +2
Query: 252 ICTNCGCYGHLGRNCMEKPSTFDPRSPNH 280
IC NCG GH+ C K ++ + P H
Sbjct: 398 ICHNCGLPGHIASECTTKSLCWNCKEPGH 484
>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II , partial
(6%)
Length = 583
Score = 30.0 bits (66), Expect = 0.92
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 264 RNCMEKPSTFDPRSPNHHTAGGNNPPS-NPEPSQPRQNPTQTCPDA 308
R E P++ P SP + +PP +P P P +PT T P +
Sbjct: 169 RPASESPTSSSPSSPPPSSGSSVSPPRISPPPPPPSNSPTATPPSS 32
>TC17861
Length = 510
Score = 30.0 bits (66), Expect = 0.92
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 264 RNCMEKPSTFDPRS--PNHHTAGGNNPPSNPEPSQPRQNPTQTCPDAINSQLMACNQN 319
R+ + K T PRS P T+ +PPS P P Q PT T S ++ NQN
Sbjct: 227 RSPVWKIPTSAPRSSPPMAGTSNSPSPPSPPPPIQSPPTPTTTTITITTSLSISFNQN 400
>TC14113 similar to UP|O82161 (O82161) Phi-1 protein, partial (87%)
Length = 1315
Score = 30.0 bits (66), Expect = 0.92
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 275 PRSPNHHTAGGNNPPSNPEPSQPRQNP 301
PR NH + G PP N S PR+ P
Sbjct: 291 PRQTNHPSPRGGKPPRNTTTSPPRRKP 371
>AW720061
Length = 304
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/77 (24%), Positives = 29/77 (36%)
Frame = -1
Query: 243 KVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPNHHTAGGNNPPSNPEPSQPRQNPT 302
K+ + H C + + L C+ P PR+ ++ G NP +P P PR P
Sbjct: 301 KLAFSFTHDACEHPTSFESLHTTCV*TPHYVPPRTS--YSRGCRNPSPSPTPPPPRAAPP 128
Query: 303 QTCPDAINSQLMACNQN 319
P + C N
Sbjct: 127 TPNPP*SGYRRTRCRSN 77
>BP041089
Length = 518
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/54 (33%), Positives = 25/54 (45%)
Frame = +1
Query: 271 STFDPRSPNHHTAGGNNPPSNPEPSQPRQNPTQTCPDAINSQLMACNQNGNSII 324
ST SP T +PPS PR+NPT T + + + N +GN+ I
Sbjct: 124 STPSSPSPTTTTTPPTSPPSTSSVETPRKNPT-TTTNPVPTPAWRTNSSGNARI 282
>TC9608 similar to UP|Q94AZ4 (Q94AZ4) At1g12310/F5O11_2, partial (97%)
Length = 817
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 92 VVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGF 128
V KL + LG++ +QK +++GG +I+ D+GF
Sbjct: 362 VTKLAIEGLGFHVFGHEIQKSREIEGGGEILLGDDGF 252
>TC17871 similar to UP|Q7UMK2 (Q7UMK2) Probable transcription termination
factor rho, partial (4%)
Length = 617
Score = 29.3 bits (64), Expect = 1.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 275 PRSPNHHTAGGNNPPSNPEPSQPRQ 299
PR PN HT G NPP + P Q
Sbjct: 473 PRRPNSHTRNGQNPPPTTAGAAP*Q 399
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 29.3 bits (64), Expect = 1.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 237 VNGHWYKVQYEG-LHLICTNCGCYGHLGRNCMEKPSTFD--PRSPNHHTAGGNNP 288
++GHW + G C CG GH+ +NC P PRS + +P
Sbjct: 406 IDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHPRSDSRSPVRSRSP 570
>BP049273
Length = 549
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Frame = +1
Query: 275 PRSPNH------HTAGGNNPPSNPEP-SQPRQNPTQTCPDAINSQ 312
P +P H H+ +P NP P SQP QNP Q P ++ +
Sbjct: 274 PPTPPHQAGCKLHSPLATSPNQNPRPLSQPHQNPNQPDPRPLDKR 408
>BF177561
Length = 375
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 270 PSTFDPRSPNHHTAGGNNPPSNPEPSQPRQNPTQTCPDAINSQL 313
P F SP+HH + + SNP P P +P P S L
Sbjct: 35 PLQFSKCSPSHHVSLQTHSHSNPTPQPPTVHPITLNPSPPPSPL 166
>BI417550
Length = 439
Score = 28.5 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +1
Query: 341 IDDNQVLHGDWLVVTRRKKTPIQHSLNASKSVTHKTNRFQALSTMTHHDKSAPINNKFPS 400
IDDN L GDW + + +T L +VT +++ H S + FP
Sbjct: 16 IDDNVALTGDWGLHSPSPRTLFSRMLE-EDNVTR---------SISEHPGSGRTGDLFPG 165
Query: 401 WSKSQEIPRANNRST 415
S E RAN R +
Sbjct: 166 THDSSETGRANMRES 210
>TC9305 weakly similar to UP|Q7XL02 (Q7XL02) OJ000315_02.15 protein,
partial (56%)
Length = 566
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = +1
Query: 271 STFDPRSPNHHTAGGNNPPSNPEPSQPRQNPTQTCP 306
S+F S + A + PSNP PS+P +P P
Sbjct: 118 SSFKLASRKSNPASNSGSPSNPSPSKPPSSPPPAPP 225
>TC13640 similar to UP|Q9LN84 (Q9LN84) T12C24.16, partial (16%)
Length = 316
Score = 28.5 bits (62), Expect = 2.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 285 GNNPPSNPEPSQPRQNPT 302
GNNPPS P+P P Q P+
Sbjct: 100 GNNPPSPPQPPPPIQLPS 153
>TC9328 similar to UP|AAR85480 (AAR85480) ANTHER INDEHISCENCE1, partial
(4%)
Length = 999
Score = 28.5 bits (62), Expect = 2.7
Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 17/68 (25%)
Frame = +1
Query: 270 PSTFDPRSP----------NHHTAGGN---NPPSNPEPSQPRQNPTQ----TCPDAINSQ 312
P + +P++P +HH + NPPS P S PR +PT CP +S
Sbjct: 10 PLSVNPKTPTLTLPPPSL*SHHRLNPSSP*NPPSAPPLSAPRYSPTSPRSLICPPGPSSN 189
Query: 313 LMACNQNG 320
A + +G
Sbjct: 190 SAASSPDG 213
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,699,944
Number of Sequences: 28460
Number of extensions: 154847
Number of successful extensions: 1334
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of query: 504
length of database: 4,897,600
effective HSP length: 94
effective length of query: 410
effective length of database: 2,222,360
effective search space: 911167600
effective search space used: 911167600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC140549.12