BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.10 - phase: 0
(184 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12907 UP|Q40201 (Q40201) RAB1A, complete 284 6e-78
TC8227 UP|Q40203 (Q40203) RAB1C, complete 251 7e-68
TC8930 UP|Q40204 (Q40204) RAB1D, complete 245 4e-66
TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete 240 1e-64
AU089325 193 1e-50
TC8253 UP|Q40219 (Q40219) RAB8E, complete 172 4e-44
NP459466 RAB8C [Lotus japonicus] 171 9e-44
TC14195 UP|Q40215 (Q40215) RAB8A, complete 166 3e-42
TC15772 UP|Q40218 (Q40218) RAB8D, complete 165 4e-42
TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein... 154 7e-39
TC14872 UP|Q40208 (Q40208) RAB2A, complete 134 7e-33
TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete 130 1e-31
NP459482 RAB11J [Lotus japonicus] 124 7e-30
TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Ra... 124 1e-29
TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete 124 1e-29
TC12838 UP|Q40196 (Q40196) RAB11F, complete 122 4e-29
TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete 122 5e-29
TC18154 UP|Q40192 (Q40192) RAB11B, complete 120 1e-28
TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein ... 120 1e-28
TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete 117 1e-27
>TC12907 UP|Q40201 (Q40201) RAB1A, complete
Length = 869
Score = 284 bits (727), Expect = 6e-78
Identities = 152/197 (77%), Positives = 164/197 (83%), Gaps = 18/197 (9%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA------KPPSCRL------ 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF + + +L
Sbjct: 128 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTA 307
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL+EIDRYAN SV KLLVGNK DL
Sbjct: 308 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDL 487
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+NK+V T TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK KMGSQPTGSKS AE
Sbjct: 488 VENKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQPTGSKS-AE 664
Query: 168 SVQMKGQPIQQNTNCCG 184
+VQMKGQPI Q +NCCG
Sbjct: 665 TVQMKGQPIPQKSNCCG 715
>TC8227 UP|Q40203 (Q40203) RAB1C, complete
Length = 1083
Score = 251 bits (640), Expect = 7e-68
Identities = 130/196 (66%), Positives = 153/196 (77%), Gaps = 18/196 (9%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 143 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 322
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 323 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 502
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T NK+V TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAAEIKN+M SQP + +
Sbjct: 503 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPV-NNARPP 679
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 680 TVQIRGQPVNQKSGCC 727
>TC8930 UP|Q40204 (Q40204) RAB1D, complete
Length = 943
Score = 245 bits (625), Expect = 4e-66
Identities = 126/196 (64%), Positives = 148/196 (75%), Gaps = 18/196 (9%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRF DDSY ++YISTIGVDF AK ++
Sbjct: 105 DYLFKLLLIGDSGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTA 284
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 285 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL 464
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T N+ V TAK FAD +GIPF+ETSAKD+ NVEQAF+ M+A IKN+M SQP+ +
Sbjct: 465 TANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANNGRPP 644
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 645 TVQIRGQPVGQKSGCC 692
>TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete
Length = 951
Score = 240 bits (612), Expect = 1e-64
Identities = 127/196 (64%), Positives = 149/196 (75%), Gaps = 18/196 (9%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF AK ++
Sbjct: 107 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTA 286
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNK DL
Sbjct: 287 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 466
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T N+ V TAKAFADE+GIPF+ETSAKD+ NVEQAF+ MAA IKN+M SQP + +
Sbjct: 467 TANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQP-ANNARPP 643
Query: 168 SVQMKGQPIQQNTNCC 183
+V + G+P+ Q++ CC
Sbjct: 644 TVNISGKPVGQSSGCC 691
>AU089325
Length = 757
Score = 193 bits (491), Expect = 1e-50
Identities = 103/148 (69%), Positives = 115/148 (77%), Gaps = 18/148 (12%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF AK ++
Sbjct: 63 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTA 242
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 243 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL 422
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAK 135
T N+ V TAK FAD++GIPF+ETSAK
Sbjct: 423 TANRAVSYDTAKEFADQIGIPFMETSAK 506
>TC8253 UP|Q40219 (Q40219) RAB8E, complete
Length = 1106
Score = 172 bits (435), Expect = 4e-44
Identities = 94/205 (45%), Positives = 133/205 (64%), Gaps = 26/205 (12%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 219 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 395
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN+K W+H I+++A+ +V+K+LVGNK D
Sbjct: 396 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDNVNKILVGNKAD 575
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMG------SQP 159
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ ++P
Sbjct: 576 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSSKTEP 755
Query: 160 TGSKSAAESVQMKGQPIQQNTNCCG 184
TG K + G+ Q++ CCG
Sbjct: 756 TGIKINPQDKGSAGEAAQKSA-CCG 827
>NP459466 RAB8C [Lotus japonicus]
Length = 639
Score = 171 bits (432), Expect = 9e-44
Identities = 94/203 (46%), Positives = 135/203 (66%), Gaps = 24/203 (11%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 37 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 213
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D
Sbjct: 214 AGQERVRTITTAYYRGAKGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 393
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ T SK+
Sbjct: 394 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSKAE 567
Query: 166 AESVQMKGQPIQ----QNTNCCG 184
+++++ QP Q QN+ CCG
Sbjct: 568 PQTIKI-NQPDQPAAAQNSTCCG 633
>TC14195 UP|Q40215 (Q40215) RAB8A, complete
Length = 1171
Score = 166 bits (419), Expect = 3e-42
Identities = 93/207 (44%), Positives = 134/207 (63%), Gaps = 28/207 (13%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 239 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDT 415
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YYRGA GI++VYDVTD SFNN+K W+ I+++A+ +V+K+LVGNK D
Sbjct: 416 AGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDNVNKILVGNKAD 595
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
+ ++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ T S++
Sbjct: 596 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAE 769
Query: 166 AESVQMK--------GQPIQQNTNCCG 184
+++Q+ GQ Q+ +CCG
Sbjct: 770 PQTIQINQPDASASGGQAAQK--SCCG 844
>TC15772 UP|Q40218 (Q40218) RAB8D, complete
Length = 1139
Score = 165 bits (418), Expect = 4e-42
Identities = 90/203 (44%), Positives = 132/203 (64%), Gaps = 24/203 (11%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K ++
Sbjct: 275 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTA 454
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TIT++YYRGA GI++VYDVTD SFNN++ W+ I+++A+ +V+K+LVGNK D+
Sbjct: 455 GQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADM 634
Query: 108 TDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMG-----SQPTG 161
++K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK ++ ++PT
Sbjct: 635 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDHKAEPTT 814
Query: 162 SKSAAESVQMKGQPIQQNTNCCG 184
K +S G+ + ++CCG
Sbjct: 815 LKINQDSAAGAGEAANK-SSCCG 880
>TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein, complete
Length = 1109
Score = 154 bits (390), Expect = 7e-39
Identities = 88/207 (42%), Positives = 131/207 (62%), Gaps = 28/207 (13%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYL KLL+IGDS VGKSCLLLRF+D S+ ++I+TIG+DF K + L
Sbjct: 288 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLHIWDT 464
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TIT++YY GA GI++VYDVTD SFN+++ W+ ++ +A+ +V+K+LVGNK D
Sbjct: 465 AGQERFRTITTAYYLGAMGILLVYDVTDESSFNHIQNWIRHLEPHASDNVNKILVGNKAD 644
Query: 107 LTDNK-LVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
+ ++K V T +A ADE GI F ETSAK ++NV++ F ++A +IK ++ SK+
Sbjct: 645 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDIKQRVAD--NDSKAE 818
Query: 166 AESVQMKGQPIQ--------QNTNCCG 184
+++++ QP Q Q + CCG
Sbjct: 819 PQTLKI-NQPDQGAGSAQAAQKSACCG 896
>TC14872 UP|Q40208 (Q40208) RAB2A, complete
Length = 1125
Score = 134 bits (338), Expect = 7e-33
Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 18/167 (10%)
Frame = +3
Query: 7 YLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL----- 53
YLFK +IIGD+ VGKSCLLL+F D + + TIGV+F KP ++
Sbjct: 219 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG 398
Query: 54 -----TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDLT 108
+IT SYYRGA G ++VYD+T E+FN++ WL + ++AN +++ +L+GNKCDL
Sbjct: 399 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 578
Query: 109 DNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKM 155
+ V T + FA E G+ F+E SAK + NVE+AF+ AA I K+
Sbjct: 579 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 719
>TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete
Length = 984
Score = 130 bits (328), Expect = 1e-31
Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 21/192 (10%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DY+FK+++IGDS+VGKS +L RFA + + STIGV+F K ++
Sbjct: 104 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTA 283
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD+T ++F+++ +WL E+ +A+ ++ +L+GNKCDL
Sbjct: 284 GQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDL 463
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAE---IKNKMGSQPTGSKS 164
+ + V T AK FA++ G+ FLETSA ++ NVE AF T+ E I NK S+
Sbjct: 464 VNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQG 643
Query: 165 AAESVQMKGQPI 176
S + GQ I
Sbjct: 644 NGNSASLSGQKI 679
>NP459482 RAB11J [Lotus japonicus]
Length = 672
Score = 124 bits (312), Expect = 7e-30
Identities = 71/166 (42%), Positives = 103/166 (61%), Gaps = 18/166 (10%)
Frame = +1
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFK+++IGDS+VGKS LL RFA D + STIGV+F K ++
Sbjct: 34 DYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIDINGKEIKAQIWDTA 213
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
+TS+YYRGA G ++VYD++ ++F+++ +WL+E+ +++ +V +LVGNK DL
Sbjct: 214 GQERFRAVTSAYYRGAVGALVVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 393
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKN 153
D + V T KA A+ G+ F+ETSA DS NV AF T+ EI N
Sbjct: 394 KDAREVTTAEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYN 531
>TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Rab11B,
partial (89%)
Length = 973
Score = 124 bits (311), Expect = 1e-29
Identities = 80/190 (42%), Positives = 110/190 (57%), Gaps = 19/190 (10%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFAKPPSCRL------------ 53
DYLFKL++IGDS VGKS LL RF + ++ STIGV+FA S R+
Sbjct: 192 DYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-SVRIHDKTVKAQIWDT 368
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
ITS+YYRGA G +IVYDVT +F NV++WL E+ + + ++ +LVGNK D
Sbjct: 369 AGQERYRAITSAYYRGAVGALIVYDVTRQVTFENVQRWLKELRDHTDANIVIMLVGNKAD 548
Query: 107 LTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAA 166
L + V T A AFA+ F+ETSA +S+NV+ AF+ + +EI N + S+ T K
Sbjct: 549 LRHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIXVLSEIYNVV-SRKTLXKGND 725
Query: 167 ESVQMKGQPI 176
+GQ I
Sbjct: 726 PGALPQGQTI 755
>TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete
Length = 1019
Score = 124 bits (310), Expect = 1e-29
Identities = 82/200 (41%), Positives = 107/200 (53%), Gaps = 22/200 (11%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKS LLL F D + D TIGVDF K +
Sbjct: 104 DYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMS-PTIGVDFKVKYVAIGGKKLKLAIWDTA 280
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQ-WLHEIDRYA-NHSVSKLLVGNKC 105
T+TSSYYRGA GII+VYDVT ++F N+ + W EID Y+ N K+LVGNK
Sbjct: 281 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKV 460
Query: 106 DLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSA 165
D +++V FA E G F+E SAK +NV+Q F + +I + GSK
Sbjct: 461 DKESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGV 640
Query: 166 AESVQMKGQP--IQQNTNCC 183
+++ QP ++CC
Sbjct: 641 KKNIFKDKQPQADASTSSCC 700
>TC12838 UP|Q40196 (Q40196) RAB11F, complete
Length = 1099
Score = 122 bits (306), Expect = 4e-29
Identities = 78/206 (37%), Positives = 110/206 (52%), Gaps = 28/206 (13%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK ++IGDS VGKS L+ RFA D + TIGV+FA K ++
Sbjct: 140 DYLFKAVLIGDSGVGKSNLISRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTA 319
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITSSYYRGA G ++VYD+T +F NV +WLHE+ + N + +LV NK DL
Sbjct: 320 GQERFRAITSSYYRGALGPMLVYDITRRPTFMNVIKWLHELREFGNEDMVVVLVANKSDL 499
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEI---------KNKMGSQ 158
++ V + FA+ G+ F+ETSA ++NVE+AFL M +I + KM
Sbjct: 500 VQSREVEKEEGEEFAEIEGLCFMETSALQNLNVEEAFLEMITKIHDIISQKSLETKMNGP 679
Query: 159 PTGSKSAAESVQMKGQ-PIQQNTNCC 183
T S + +Q+ + + NCC
Sbjct: 680 TTLSVPIGKEIQVADEVTATKQANCC 757
>TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete
Length = 1193
Score = 122 bits (305), Expect = 5e-29
Identities = 69/187 (36%), Positives = 109/187 (57%), Gaps = 18/187 (9%)
Frame = +3
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK+++IGDS VGKS +L RF + + STIGV+FA K ++
Sbjct: 264 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 443
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITS+YYRGA G ++VYD+T ++F+NV++WL E+ +A+ ++ ++ GNK DL
Sbjct: 444 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 623
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+ V A A++ G+ FLETSA ++ N+E+AF T+ EI + + + ++ A
Sbjct: 624 NHLRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATA 803
Query: 168 SVQMKGQ 174
+ GQ
Sbjct: 804 GASVPGQ 824
>TC18154 UP|Q40192 (Q40192) RAB11B, complete
Length = 1183
Score = 120 bits (301), Expect = 1e-28
Identities = 69/174 (39%), Positives = 107/174 (60%), Gaps = 18/174 (10%)
Frame = +2
Query: 3 DFSDYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL- 53
D DY+FK+++IGDS+VGK+ +L RFA + + +TIGV+F AK ++
Sbjct: 353 DKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKATIGVEFQTRTVTINAKVIKAQIW 532
Query: 54 ---------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNK 104
+TS+YYRGA G ++VYD+T +SF++V +W+ E+ +A+ S+ +L+GNK
Sbjct: 533 DTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLIGNK 712
Query: 105 CDLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQ 158
DL D ++V + A FA+E G+ F ETSA NVE AFL + EI ++ S+
Sbjct: 713 GDLVDQRVVLSEDAVEFAEEQGLFFSETSALTGENVESAFLKLLQEINTRVVSK 874
>TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 860
Score = 120 bits (301), Expect = 1e-28
Identities = 72/181 (39%), Positives = 108/181 (58%), Gaps = 18/181 (9%)
Frame = +2
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL---- 53
DYLFK+++IGDS VGKS LL RF + + STIGV+FA + ++
Sbjct: 110 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLEVEGRMVKAQIWDTA 289
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
ITS+YYRGA G ++VYDVT SF NV +WL E+ +A+ ++ +L+GNK DL
Sbjct: 290 GQERYRAITSAYYRGALGALLVYDVTKPTSFENVTRWLKELRDHADANIVIMLIGNKTDL 469
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+ V T A+++A++ G+ F+ETSA ++ NV++AF T+ A+I + + S S
Sbjct: 470 KHLRGVATEDAQSYAEKEGLSFIETSALEATNVDKAFQTILAQIYRIISKKSLSSSSTDP 649
Query: 168 S 168
S
Sbjct: 650 S 652
>TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete
Length = 1302
Score = 117 bits (293), Expect = 1e-27
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 20/194 (10%)
Frame = +2
Query: 3 DFSDYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA--------KPPSCRL- 53
D DYLFKL++IGDS VGKS LL RF + ++ STIGV+FA K ++
Sbjct: 269 DEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIW 448
Query: 54 ---------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNK 104
ITS+YYRGA G ++VYDVT +F N +WL E+ + + ++ +L+GNK
Sbjct: 449 DTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNK 628
Query: 105 CDLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQ--PTGS 162
DL V T K+FA+ + F+ETSA ++ NVE AF + +I + + G
Sbjct: 629 SDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGD 808
Query: 163 KSAAESVQMKGQPI 176
++ + KGQ I
Sbjct: 809 SGSSSGLPSKGQTI 850
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,022,907
Number of Sequences: 28460
Number of extensions: 35647
Number of successful extensions: 232
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of query: 184
length of database: 4,897,600
effective HSP length: 85
effective length of query: 99
effective length of database: 2,478,500
effective search space: 245371500
effective search space used: 245371500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC140549.10