TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140068.2 + phase: 0 
         (501 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16057 weakly similar to UP|Q9M6R4 (Q9M6R4) Glutathione S-trans...    32  0.24
BP080175                                                               30  0.70
AV421962                                                               30  0.70
TC19022 weakly similar to GB|AAP13366.1|30023666|BT006258 At1g21...    30  1.2
BP039630                                                               29  1.6
AV766852                                                               28  2.7
BP081986                                                               28  3.5
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,...    28  3.5
BP047748                                                               28  3.5
TC16643 similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein k...    25  3.9
CB829525                                                               27  7.8
TC16351 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r...    27  7.8

>TC16057 weakly similar to UP|Q9M6R4 (Q9M6R4) Glutathione S-transferase,
           partial (37%)
          Length = 590

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +3

Query: 452 KFLDPSRVPW-VEWIEKFDAHTSIPNDQLDEVRK----ARNLWKE 491
           KFLDP   P  V+W EKF AH ++  D + E  K    A+ LW +
Sbjct: 237 KFLDPENTPGLVKWAEKFCAHIAV-QDIMPETEKLHEFAKMLWAQ 368


>BP080175 
          Length = 421

 Score = 30.4 bits (67), Expect = 0.70
 Identities = 21/85 (24%), Positives = 31/85 (35%)
 Frame = -2

Query: 192 IIGIQSHSSNDEIDYHMSEFNDILKEFEGGHPFHNYTSRSRYRRHIPRRPSHSKCGEILS 251
           I+G     S  +I    ++   + KEF+  +  H  TS     R IPR  S+     +L 
Sbjct: 396 ILGHAGSESGPDISVLTTKIEKVPKEFDRRNSLHPNTSNYGSARSIPRTSSNQDNNRVLQ 217

Query: 252 AYNSEQEDSDEEENFKVDEALTGNI 276
              S           KV  +  G I
Sbjct: 216 GITSSGSSGSSSMKMKVLCSFGGKI 142


>AV421962 
          Length = 489

 Score = 30.4 bits (67), Expect = 0.70
 Identities = 11/31 (35%), Positives = 19/31 (60%)
 Frame = +2

Query: 111 GWARSSRTDKGVHSLATMVAFKMEIPENSWN 141
           GW+R  R++KG    + +V+ K+ I +  WN
Sbjct: 383 GWSREHRSNKGAAEFSHLVSTKISIQDIEWN 475


>TC19022 weakly similar to GB|AAP13366.1|30023666|BT006258 At1g21820
           {Arabidopsis thaliana;}, partial (27%)
          Length = 572

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 235 RHIPRRPSHSKCGEILSAYNSEQEDSDEEE 264
           RH+PR+  H + G        + EDSD+EE
Sbjct: 245 RHVPRQQQHQQGGRCEGEKRLDDEDSDKEE 156


>BP039630 
          Length = 550

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +3

Query: 52  QPFRKKKVVMRIAYTGTNYRGLQMQRDQNSLSTVEKELESAIFKAGGIRESNLGDLEKIG 111
           Q  R ++ ++ I Y GT + G Q Q    +  TV   LE A  K            + + 
Sbjct: 159 QKQRIQRYLLAIEYIGTRFSGSQKQL---TCRTVVGVLEEAFCKFLS---------QPVS 302

Query: 112 WARSSRTDKGVHSLATM 128
              SSRTD GVH+L+ +
Sbjct: 303 VTCSSRTDAGVHALSNV 353


>AV766852 
          Length = 492

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = -2

Query: 177 KECVLRKYSYLLPADIIGIQSHSSNDEIDYH 207
           K CVL  YSYLLP + + ++  S    + +H
Sbjct: 221 KSCVLCSYSYLLPVNQMYVRKISRGLHVSFH 129


>BP081986 
          Length = 433

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 410 SFSMRTKPGNVTRPEMQTIVESEEINKVVDDFYRSVMLPQVSKFLDPSRVPWVEWIEKFD 469
           S S  TKP   TRP+++ I+E+E++              ++  FL  S+  W        
Sbjct: 130 SASAETKPRKTTRPKLK-IIETEQLPDA-----------KMISFLHQSKTTW-------- 249

Query: 470 AHTSIPNDQLDEVRKARN 487
             T  PNDQL   +  +N
Sbjct: 250 PTTDAPNDQLPPPK*KKN 303


>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
           subunit, partial (81%)
          Length = 1263

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -1

Query: 378 LLPRDIITLSLSKFSRIILPLAPSEVLLL 406
           LLPR+  +LSL + SR ILPL    +LLL
Sbjct: 768 LLPRES*SLSL*RLSRSILPLRRGGLLLL 682


>BP047748 
          Length = 595

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (51%)
 Frame = -2

Query: 243 HSKCGEILSAYNSEQEDSDEEENFKVDEALTGNIECQNQKSSGTSDSC 290
           H  CGE+L +Y +EQE  + ++ +K  E      + ++Q  SG    C
Sbjct: 354 HRNCGELLESYRAEQE-FEIQQQWKGCETKMEFSKSEDQTRSGVRS*C 214


>TC16643 similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein kinase-like
           protein, partial (28%)
          Length = 585

 Score = 25.0 bits (53), Expect(2) = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (49%)
 Frame = +1

Query: 278 CQNQKSSGTSDSCEPVIETGNKGNLHDQSSSSVVRAKWLYEP 319
           CQ++KS+ +       I      N +  SS S+V A W ++P
Sbjct: 106 CQHRKSTKSRTRRNNQIRARPLRNPNPSSSLSIVDASWSWDP 231



 Score = 21.2 bits (43), Expect(2) = 3.9
 Identities = 9/21 (42%), Positives = 10/21 (46%)
 Frame = +3

Query: 223 PFHNYTSRSRYRRHIPRRPSH 243
           P H    R  +RRH P R  H
Sbjct: 36  PSHLRRHRQLHRRHAPPRRRH 98


>CB829525 
          Length = 432

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (49%), Gaps = 2/36 (5%)
 Frame = +2

Query: 20  PYTNSTPIIGNRRRWE--CFRYCSFSSTPQSYSWQP 53
           P+T  TP +  RRRW+     YCS    P   + +P
Sbjct: 95  PWTPQTPPLWARRRWKNSSANYCSTQPNPSPSASEP 202


>TC16351 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
           modulator, partial (11%)
          Length = 756

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -3

Query: 35  ECFRYCSFSSTPQSYSWQPFRKKK 58
           +C   CS+     S+ WQP +KKK
Sbjct: 247 QCSLLCSYLGDLSSFFWQPQKKKK 176


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,685,177
Number of Sequences: 28460
Number of extensions: 120616
Number of successful extensions: 651
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of query: 501
length of database: 4,897,600
effective HSP length: 94
effective length of query: 407
effective length of database: 2,222,360
effective search space: 904500520
effective search space used: 904500520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)