TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140034.3 + phase: 0 
         (199 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11995                                                                29  0.48
TC7923 similar to UP|PDI_MEDSA (P29828) Protein disulfide isomer...    28  1.4
TC12439 similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, part...    27  3.1
BP075375                                                               27  3.1
AW720071                                                               25  6.9
AV408775                                                               25  6.9
TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding ...    25  9.0
BU494461                                                               25  9.0

>TC11995 
          Length = 726

 Score = 29.3 bits (64), Expect = 0.48
 Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
 Frame = +1

Query: 70  RDFYTSYLGRANVLAGTEDPEELEELARVRTYCVR--WYLMYLVG 112
           R F T+YLGR  V+  T + ++ EE+   + + +R  ++L+Y  G
Sbjct: 298 RSFQTNYLGRLTVIHNTLEGKKKEEILFCQVFVLRVFYFLVYRNG 432


>TC7923 similar to UP|PDI_MEDSA (P29828) Protein disulfide isomerase
            precursor  (PDI) , partial (89%)
          Length = 1861

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 152  LYGELADACRPGHRALGGSVTLLTVRKLKFYIYVNFIFLLYF 193
            L  E+   CRP    L G+  LL+   L F++ +N IF L F
Sbjct: 1645 LDSEMQQRCRPPQHPLRGAALLLSKLVLGFFL-LNLIFSLLF 1523


>TC12439 similar to UP|Q9FMJ2 (Q9FMJ2) Ankyrin-like protein, partial (5%)
          Length = 534

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 173 LLTVRKLKFYIYVNFIFLLYFSVR 196
           L  +RKL   ++V FIFLL++ +R
Sbjct: 530 LSIIRKLLCRLFVQFIFLLFWQIR 459


>BP075375 
          Length = 366

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 101 YCVRWYLMYLVGCL 114
           YCV W LMYL+G L
Sbjct: 88  YCVYWRLMYLLGLL 47


>AW720071 
          Length = 377

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = -1

Query: 152 LYGELADACRPGHRALGGSVTLLTVRKLKFY 182
           LY +LAD+     RAL    TL+  ++L+FY
Sbjct: 284 LYAKLADSVMTSRRALAARSTLID-QRLRFY 195


>AV408775 
          Length = 427

 Score = 25.4 bits (54), Expect = 6.9
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -1

Query: 89  PEELEELARVRTYCVRWYL 107
           PE LE + R R  C+RW L
Sbjct: 157 PERLERIQRRRKGCLRWVL 101


>TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding protein
           (cab-11), complete
          Length = 1025

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 22/67 (32%), Positives = 30/67 (43%)
 Frame = +2

Query: 83  LAGTEDPEELEELARVRTYCVRWYLMYLVGCLLFDDRSNKRIELIYLTTMADGYAGMRNY 142
           LA  EDPE L+   +      RW ++ + G LL +  +N  I LI +    D  AG   Y
Sbjct: 284 LALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTN--IGLINVPKWYD--AGKAEY 451

Query: 143 SWGGMTL 149
                TL
Sbjct: 452 FASSSTL 472


>BU494461 
          Length = 495

 Score = 25.0 bits (53), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (64%)
 Frame = +1

Query: 170 SVTLLTVRKLKFYIYVNFIFLLYFSV 195
           ++T+L +R   +Y+Y+NF   L F +
Sbjct: 157 TITMLLIRDAFYYLYINF*LNLTFFI 234


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,561,511
Number of Sequences: 28460
Number of extensions: 47056
Number of successful extensions: 319
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of query: 199
length of database: 4,897,600
effective HSP length: 86
effective length of query: 113
effective length of database: 2,450,040
effective search space: 276854520
effective search space used: 276854520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)