TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140030.9 - phase: 0 /pseudo
         (113 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)         28  0.22
TC10746 similar to UP|UT11_ORYSA (Q8S1Z1) Probable U3 small nucl...    26  0.83
TC14344 similar to UP|Q40310 (Q40310) Chalcone reductase, complete     26  1.1
TC14345 homologue to UP|Q39774 (Q39774) Polyketide reductase, pa...    26  1.1
AV781184                                                               25  1.4
AV412579                                                               25  1.8
TC17214                                                                25  2.4
AV427209                                                               25  2.4
AI967473                                                               25  2.4
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par...    25  2.4
TC16410 similar to UP|Q9XHL6 (Q9XHL6) Sucrose transport protein ...    25  2.4
BP044719                                                               25  2.4
AV421977                                                               24  3.2
TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 ...    24  3.2
AV414324                                                               24  3.2
TC10378 similar to UP|Q84TG2 (Q84TG2) At3g16350, partial (26%)         24  3.2
CB828798                                                               24  4.1
AV767672                                                               24  4.1
TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, p...    24  4.1
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p...    23  5.4

>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
          Length = 425

 Score = 28.1 bits (61), Expect = 0.22
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -2

Query: 5   RWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPAL--DAVVDSITDVVG-GDHRV 61
           RW VR   KG+L   +W    E  G       W RR+  +    VV ++  VVG G  RV
Sbjct: 241 RWTVRFAVKGWLLLWWWVRVVEG-GVRAAGAAWWRRVVGVLFFVVVSAVVVVVGVGGVRV 65

Query: 62  LKILME 67
           +  L+E
Sbjct: 64  VTALVE 47


>TC10746 similar to UP|UT11_ORYSA (Q8S1Z1) Probable U3 small nucleolar
          RNA-associated protein 11 (U3 snoRNA-associated protein
          11), partial (54%)
          Length = 558

 Score = 26.2 bits (56), Expect = 0.83
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -2

Query: 73 GGGSGGGNLEMEKVFKLAREVYGK 96
          G G GGG +E+ + F +   VYG+
Sbjct: 83 GAGCGGGRMEIVRAFPMGF*VYGR 12


>TC14344 similar to UP|Q40310 (Q40310) Chalcone reductase, complete
          Length = 1180

 Score = 25.8 bits (55), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = +3

Query: 71  RKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLE 108
           RKGG  G   +    + K   E +GK + + ++R L E
Sbjct: 729 RKGGSRGPNEVMENDMLKEIAEAHGKTIAQVSLRWLYE 842


>TC14345 homologue to UP|Q39774 (Q39774) Polyketide reductase, partial (35%)
          Length = 516

 Score = 25.8 bits (55), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = +3

Query: 71  RKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLE 108
           RKGG  G   +    + K   E +GK + + ++R L E
Sbjct: 54  RKGGSRGANEVMENDMLKEIAEAHGKSIAQVSLRWLYE 167


>AV781184 
          Length = 462

 Score = 25.4 bits (54), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
 Frame = +1

Query: 31  ERCMKRWGRRIPALDAVVD-SITDVVGGD 58
           E C+ RW  R+P ++ V+D   T + GGD
Sbjct: 247 EECLDRWQFRVPFIEWVLDVGSTLLDGGD 333


>AV412579 
          Length = 394

 Score = 25.0 bits (53), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +3

Query: 28  YGSERCMKRWGRRIPALDA 46
           Y S+RC  R+GRR P + A
Sbjct: 309 YSSDRCTSRFGRRRPFIFA 365


>TC17214 
          Length = 556

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 15  YLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVV-GGDHRVLKILMEELKRKG 73
           Y++A + S YS  +  E+  ++  +        VD    VV GGD  V +    ELK KG
Sbjct: 116 YVQAKWLSPYSRIHEEEKEKQQVLKEEIENPVAVDVAETVVSGGDGAVAEWKPPELKPKG 295

Query: 74  GGSG 77
             SG
Sbjct: 296 SLSG 307


>AV427209 
          Length = 354

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
 Frame = -1

Query: 35  KRWGRRIPALDAV--------VDSITDVVGGDHRVLKILMEELKRKGGGSGGGNLE 82
           +R G R+P    V        V ++ D  GG         EE + +GGG GGG  E
Sbjct: 333 ERTGERVPQSSQVEFL*GLSRVQALHDHFGG---------EEEEEEGGGDGGGEEE 193


>AI967473 
          Length = 355

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 14/54 (25%), Positives = 25/54 (45%)
 Frame = -3

Query: 11  KEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKI 64
           +  G+LR  FW++     G  RC +  G  +   D  V  + D   G+ R++ +
Sbjct: 176 RSTGFLRRGFWAVKRVVVGGRRC-RFVGASLDPGDGGVWPLEDEFCGEMRMVAL 18


>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
          Length = 1306

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 14/30 (46%), Positives = 18/30 (59%)
 Frame = -2

Query: 68  ELKRKGGGSGGGNLEMEKVFKLAREVYGKV 97
           E K +GGG GGG  E E   ++A  V+G V
Sbjct: 336 EGKGRGGGGGGGGKEAEP--EVAGGVHGDV 253


>TC16410 similar to UP|Q9XHL6 (Q9XHL6) Sucrose transport protein SUT1,
           partial (27%)
          Length = 502

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +2

Query: 28  YGSERCMKRWGRRIPALDA 46
           Y S+RC  R+GRR P + A
Sbjct: 308 YHSDRCTSRFGRRRPFIAA 364


>BP044719 
          Length = 495

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 10/17 (58%), Positives = 12/17 (69%)
 Frame = -2

Query: 70  KRKGGGSGGGNLEMEKV 86
           K +GGG G  NLE E+V
Sbjct: 431 KGRGGGGGDANLEKEEV 381


>AV421977 
          Length = 535

 Score = 24.3 bits (51), Expect = 3.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 46  AVVDSITDVVGGDHRVLKILMEELKRKGGGSGGG 79
           AVVD+   V GG      ++  E++  GGG G G
Sbjct: 339 AVVDAEALVGGGGEAAGVLVEGEVEEGGGGGGSG 238


>TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
           proteasome subunit 7) (26S proteasome AAA-ATPase subunit
           RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
           partial (46%)
          Length = 867

 Score = 24.3 bits (51), Expect = 3.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 53  DVVGGDHRVLKILMEELKRKGGGSGGGNLEM 83
           D VGGD+ V + ++E + +  G    GN+++
Sbjct: 149 DGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 241


>AV414324 
          Length = 380

 Score = 24.3 bits (51), Expect = 3.2
 Identities = 8/12 (66%), Positives = 10/12 (82%)
 Frame = +1

Query: 4   KRWKVRGKEKGY 15
           K WKVRG E+G+
Sbjct: 199 KSWKVRGSERGF 234


>TC10378 similar to UP|Q84TG2 (Q84TG2) At3g16350, partial (26%)
          Length = 442

 Score = 24.3 bits (51), Expect = 3.2
 Identities = 18/42 (42%), Positives = 23/42 (53%)
 Frame = +2

Query: 71  RKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLELCIA 112
           R GGGSGGG   + K+F + R   G ++KK A    L L  A
Sbjct: 143 RGGGGSGGGGGGV-KLFGV-RLTDGPIIKKSASMGSLTLSSA 262


>CB828798 
          Length = 399

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -3

Query: 4   KRWKVRGKEKGYLRAS 19
           KRWK +GKEK  L+ S
Sbjct: 103 KRWK*KGKEKQSLKPS 56


>AV767672 
          Length = 587

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 15  YLRASFWSLYSEAYGSER 32
           YLR  FW  + EAY S +
Sbjct: 569 YLRERFWDFWEEAY*STK 516


>TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, partial
          (21%)
          Length = 523

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 67 EELKRKGGGSGGG 79
          EE  R+GGG GGG
Sbjct: 85 EERARRGGGGGGG 47


>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
           partial (93%)
          Length = 725

 Score = 23.5 bits (49), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (53%)
 Frame = +1

Query: 45  DAVVDSITDVVGGDHRVLKILMEELKRKGGGSGGG 79
           +A+  +I  + G +     I + E + +GGG GGG
Sbjct: 238 EAMRSAIEGMNGNELDGRNITVNEAQARGGGGGGG 342


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,911,745
Number of Sequences: 28460
Number of extensions: 22995
Number of successful extensions: 244
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of query: 113
length of database: 4,897,600
effective HSP length: 89
effective length of query: 24
effective length of database: 2,364,660
effective search space: 56751840
effective search space used: 56751840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)