BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140030.7 - phase: 0
(271 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP050825 233 3e-62
TC16724 similar to GB|BAB20599.1|12060424|AB049070 AtNAC3 {Arabi... 219 3e-58
TC18158 similar to UP|Q84TD6 (Q84TD6) At3g04070, partial (34%) 208 9e-55
TC16783 similar to UP|AAR88435 (AAR88435) NAC domain protein, pa... 195 8e-51
BP038107 190 2e-49
TC16322 homologue to UP|Q9SQL0 (Q9SQL0) Jasmonic acid 2, partial... 188 1e-48
TC19684 similar to UP|AAR88435 (AAR88435) NAC domain protein, pa... 137 1e-43
TC13201 similar to UP|Q8LRL6 (Q8LRL6) Nam-like protein 9, partia... 117 2e-27
AV428075 114 2e-26
CB829660 107 2e-24
TC12159 similar to UP|Q9M4U3 (Q9M4U3) NAC1, partial (21%) 97 2e-21
TC9181 similar to UP|Q9FY93 (Q9FY93) NAM-like protein (AT5g13180... 97 4e-21
AU252221 84 2e-17
TC14586 similar to UP|Q9FY93 (Q9FY93) NAM-like protein (AT5g1318... 73 4e-14
CB826743 66 7e-12
TC10464 weakly similar to UP|Q8L8G0 (Q8L8G0) Nam-like protein 1,... 60 4e-10
TC20162 similar to UP|Q8LKN6 (Q8LKN6) Nam-like protein 18, parti... 54 2e-08
CB827481 54 2e-08
AV428176 53 5e-08
AV416309 41 2e-04
>BP050825
Length = 539
Score = 233 bits (594), Expect = 3e-62
Identities = 107/170 (62%), Positives = 128/170 (74%), Gaps = 9/170 (5%)
Frame = +2
Query: 3 SSASSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEE 62
S LPPGFRFHPTDEEL+VHYL +A S P P +II EVD+YKFDPWELP K+ F E
Sbjct: 20 SQQQPNLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGE 199
Query: 63 NEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAI--KSGSKQIGVKKSLVFYKGRPP 120
EWYFFSPR+RKYPNG RPNRA SGYWKATGTDK + +G++++GVKK+LVFY G+PP
Sbjct: 200 QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSNGTQKVGVKKALVFYGGKPP 379
Query: 121 KGVKTDWIMHEYRLIGSQKQT-------SKHIGSMRLDDWVLCRIYKKKH 163
+G+KT+WIMHEYRL ++ S+RLDDWVLCRIYKK +
Sbjct: 380 RGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSN 529
>TC16724 similar to GB|BAB20599.1|12060424|AB049070 AtNAC3 {Arabidopsis
thaliana;}, partial (53%)
Length = 615
Score = 219 bits (559), Expect = 3e-58
Identities = 102/159 (64%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Frame = +2
Query: 5 ASSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENE 64
A LPPGFRF PTDEEL+V YLC + II E+D+YKFDPW LP K+ F E E
Sbjct: 122 AQLSLPPGFRFFPTDEELLVQYLCRKVAGYHFSLPIIAEIDLYKFDPWVLPGKAIFGEKE 301
Query: 65 WYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVK 124
WYFFSPR+RKYPNG RPNR SGYWKATGTDK I + +++G+KK+LVFY G+ PKG K
Sbjct: 302 WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYIGKAPKGTK 481
Query: 125 TDWIMHEYRLIGSQKQTSKH-IGSMRLDDWVLCRIYKKK 162
T+WIMHEYRL+ S + KH +GS RLD+WVLCRIYKKK
Sbjct: 482 TNWIMHEYRLLDSSR---KHKLGSSRLDEWVLCRIYKKK 589
>TC18158 similar to UP|Q84TD6 (Q84TD6) At3g04070, partial (34%)
Length = 476
Score = 208 bits (529), Expect = 9e-55
Identities = 98/137 (71%), Positives = 106/137 (76%), Gaps = 7/137 (5%)
Frame = +3
Query: 5 ASSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENE 64
A S LPPGFRFHPTDEELI+HYL + S P P SII EVDIYK DPWELP K+ F E E
Sbjct: 66 AESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELPGKALFGEKE 245
Query: 65 WYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKS-------GSKQIGVKKSLVFYKG 117
WYFFSPR+RKYPNG RPNRA SGYWKATGTDK I + IGVKK+LVFYKG
Sbjct: 246 WYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPGGGRAQDSIGVKKALVFYKG 425
Query: 118 RPPKGVKTDWIMHEYRL 134
+PPKGVKT+WIMHEYRL
Sbjct: 426 KPPKGVKTNWIMHEYRL 476
>TC16783 similar to UP|AAR88435 (AAR88435) NAC domain protein, partial (46%)
Length = 511
Score = 195 bits (495), Expect = 8e-51
Identities = 86/136 (63%), Positives = 105/136 (76%)
Frame = +1
Query: 8 ELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENEWYF 67
ELPPGFRFHPTD+EL+ HYLC + S+P II E+D+YKFDPW+LPD + + E EWYF
Sbjct: 94 ELPPGFRFHPTDDELVKHYLCAKCASQPINVPIIKELDLYKFDPWQLPDMALYGEKEWYF 273
Query: 68 FSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDW 127
F+PR+RKYPNG RPNRA +GYWKATG DK I K +G+KK+LVFY G+ PKGVKT+W
Sbjct: 274 FTPRDRKYPNGSRPNRAAGTGYWKATGADKPI-GKPKTLGIKKALVFYAGKAPKGVKTNW 450
Query: 128 IMHEYRLIGSQKQTSK 143
IMHEYRL + +K
Sbjct: 451 IMHEYRLANVDRSATK 498
>BP038107
Length = 469
Score = 190 bits (483), Expect = 2e-49
Identities = 86/140 (61%), Positives = 105/140 (74%), Gaps = 2/140 (1%)
Frame = +3
Query: 6 SSEL--PPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEEN 63
+SEL PPGFRFHPTDEEL++HYLC + S+P II E+D+YK+DPW+LP + + E
Sbjct: 48 ASELQWPPGFRFHPTDEELVLHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEK 227
Query: 64 EWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGV 123
EWYFFSPR+RKYPNG RPNRA +GYWKATG DK I K +G+KK+LVFY G+ PKG
Sbjct: 228 EWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI-GHPKPVGIKKALVFYAGKAPKGD 404
Query: 124 KTDWIMHEYRLIGSQKQTSK 143
KT+WIMHEYRL + K
Sbjct: 405 KTNWIMHEYRLADVDRSIRK 464
>TC16322 homologue to UP|Q9SQL0 (Q9SQL0) Jasmonic acid 2, partial (40%)
Length = 510
Score = 188 bits (477), Expect = 1e-48
Identities = 82/125 (65%), Positives = 97/125 (77%)
Frame = +1
Query: 9 LPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENEWYFF 68
LPPGFRF+PTDEEL+V YLC + II E+D+YKFDPW LP K+ F E EWYFF
Sbjct: 136 LPPGFRFYPTDEELLVQYLCRKVAGHNFTLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFF 315
Query: 69 SPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDWI 128
SPR+RKYPNG RPNR SGYWKATGTDK I + +++G+KK+LVFY G+ PKG KT+WI
Sbjct: 316 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWI 495
Query: 129 MHEYR 133
MHEYR
Sbjct: 496 MHEYR 510
>TC19684 similar to UP|AAR88435 (AAR88435) NAC domain protein, partial (48%)
Length = 535
Score = 137 bits (344), Expect(2) = 1e-43
Identities = 60/90 (66%), Positives = 69/90 (76%)
Frame = +2
Query: 8 ELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENEWYF 67
ELPPGFRFHPTDEEL+ HYLC + + S+I E+D+YKFDPW+LP+ E EWYF
Sbjct: 107 ELPPGFRFHPTDEELVNHYLCTKGAGQSFNYSVIKEIDLYKFDPWQLPEMGLDGEKEWYF 286
Query: 68 FSPRERKYPNGVRPNRATLSGYWKATGTDK 97
FSPR+RKYPNG RPNRA SGY KATG DK
Sbjct: 287 FSPRDRKYPNGSRPNRAAGSGYGKATGADK 376
Score = 55.8 bits (133), Expect(2) = 1e-43
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +3
Query: 104 KQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMRLD 151
+ +G+KK+LV Y G+ PKG+KT+WIMHEYRL + K ++RLD
Sbjct: 393 RALGIKKALVLYVGKAPKGIKTNWIMHEYRLANVDRSAGKK-SNLRLD 533
>TC13201 similar to UP|Q8LRL6 (Q8LRL6) Nam-like protein 9, partial (22%)
Length = 465
Score = 117 bits (293), Expect = 2e-27
Identities = 57/125 (45%), Positives = 79/125 (62%), Gaps = 3/125 (2%)
Frame = +3
Query: 1 MESSASSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELP--DKS 58
+ S SS L PGFRFHPTDEEL+ YL + T + I VD+YK++PW+LP K
Sbjct: 87 IRKSMSSNLSPGFRFHPTDEELVGFYLKRRVTGRLFHGDPIGIVDVYKYEPWDLPCLSKM 266
Query: 59 EFEENEWYFFSPRERKYPNG-VRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKG 117
+ + EWYF+S ++KY G R NRAT GYWK TG D+ + ++ +G+KK+LV++ G
Sbjct: 267 KTRDLEWYFYSGLDKKYGKGSSRTNRATEKGYWKTTGKDRPVNHANRTVGMKKTLVYHFG 446
Query: 118 RPPKG 122
R G
Sbjct: 447 RASTG 461
>AV428075
Length = 310
Score = 114 bits (284), Expect = 2e-26
Identities = 54/101 (53%), Positives = 74/101 (72%), Gaps = 1/101 (0%)
Frame = +2
Query: 62 ENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGS-KQIGVKKSLVFYKGRPP 120
E EWYF+ PR+RKY NG RPNR T SGYWKATG D+ I++ + + IG+KK+LVFY G+ P
Sbjct: 5 EKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAP 184
Query: 121 KGVKTDWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKK 161
KG++T WIM+EYRL Q +T ++ + + LCR+YK+
Sbjct: 185 KGMRTSWIMNEYRL--PQHETERY----QKAEISLCRVYKR 289
>CB829660
Length = 517
Score = 107 bits (268), Expect = 2e-24
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = +1
Query: 1 MESSASSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELP 55
ME S+SSELPPGFRFHPTDEELIVHYLCNQ +S P PA IIPEVDIYKFDPWELP
Sbjct: 106 MEGSSSSELPPGFRFHPTDEELIVHYLCNQVSSHPSPAPIIPEVDIYKFDPWELP 270
Score = 58.2 bits (139), Expect = 1e-09
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = +3
Query: 56 DKSEFEENEWYFFSPRERKYPNGVRPNRA 84
DK+ F E EWYFFSPRERKYPNG RPNRA
Sbjct: 429 DKTAFGEKEWYFFSPRERKYPNGARPNRA 515
>TC12159 similar to UP|Q9M4U3 (Q9M4U3) NAC1, partial (21%)
Length = 630
Score = 97.4 bits (241), Expect = 2e-21
Identities = 45/86 (52%), Positives = 57/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 8 ELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKS--EFEENEW 65
+L PGFRFHP D EL+ YL + + P +I EV++YK PW+LPDKS + EW
Sbjct: 373 KLVPGFRFHPMDVELVKFYLKRKVMGRKLPHDVIAEVNVYKHAPWDLPDKSCLRTGDLEW 552
Query: 66 YFFSPRERKYPNGVRPNRATLSGYWK 91
YFFSP E+KY +G R NRAT G+WK
Sbjct: 553 YFFSPTEKKYGSGARMNRATEIGFWK 630
>TC9181 similar to UP|Q9FY93 (Q9FY93) NAM-like protein
(AT5g13180/T19L5_140), partial (30%)
Length = 519
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/70 (67%), Positives = 52/70 (74%)
Frame = +1
Query: 9 LPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENEWYFF 68
LPPGFRFHPTDEEL+V YL + S P PASIIPEVD+ K DPW+LP S E E YFF
Sbjct: 316 LPPGFRFHPTDEELVVQYLKRKIFSCPLPASIIPEVDLCKSDPWDLPGDS---ERERYFF 486
Query: 69 SPRERKYPNG 78
S +E KYPNG
Sbjct: 487 SMKEAKYPNG 516
>AU252221
Length = 424
Score = 84.3 bits (207), Expect = 2e-17
Identities = 38/51 (74%), Positives = 40/51 (77%)
Frame = +1
Query: 5 ASSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELP 55
A S LPPGFRFHPTDEELI+HYL + S P P SII EVDIYK DPWELP
Sbjct: 94 AESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELP 246
>TC14586 similar to UP|Q9FY93 (Q9FY93) NAM-like protein
(AT5g13180/T19L5_140), partial (18%)
Length = 589
Score = 73.2 bits (178), Expect = 4e-14
Identities = 43/127 (33%), Positives = 67/127 (51%), Gaps = 2/127 (1%)
Frame = +3
Query: 106 IGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSK--HIGSMRLDDWVLCRIYKKKH 163
+G+KK+LVFY G+PP G +TDWIMHEYRL+ + T+ H+ + +++WVLCRI+ K+
Sbjct: 3 VGMKKTLVFYTGKPPHGSRTDWIMHEYRLLTNTNTTTTQGHV-QVPMENWVLCRIFLKRR 179
Query: 164 MGKTLQQKEDYSTHQFNDSIITNNDDGELEMMNLTRSCSLTYLLDMNYFGPILSDGSTLD 223
G ++E H FN+ + G + + L N P S S+
Sbjct: 180 GGVKNGEEE----HSFNNISLKAGKAGRVVFYD---------FLAQNKINPASSSSSSAT 320
Query: 224 FQINNSN 230
I ++N
Sbjct: 321 SGITDNN 341
>CB826743
Length = 513
Score = 65.9 bits (159), Expect = 7e-12
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +2
Query: 96 DKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMR--LDDW 153
D+ IKSGS IG+KK+LVFY GR PKG +T W+MHEYR T K + + +
Sbjct: 2 DRKIKSGSTLIGMKKTLVFYAGRAPKGKRTHWVMHEYR------PTLKELDGTNP*QNPY 163
Query: 154 VLCRIYKK 161
VLCR++KK
Sbjct: 164 VLCRLFKK 187
>TC10464 weakly similar to UP|Q8L8G0 (Q8L8G0) Nam-like protein 1, partial
(12%)
Length = 935
Score = 60.1 bits (144), Expect = 4e-10
Identities = 30/62 (48%), Positives = 43/62 (68%)
Frame = +1
Query: 101 SGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYK 160
SGS IG+KK+LVFY GR PKG +T+W+MHEYR Q+ + G + +V+CR++K
Sbjct: 1 SGSSLIGMKKTLVFYHGRAPKGKRTNWVMHEYRPT-LQELDGTNPGQ---NPYVICRLFK 168
Query: 161 KK 162
K+
Sbjct: 169 KQ 174
>TC20162 similar to UP|Q8LKN6 (Q8LKN6) Nam-like protein 18, partial (17%)
Length = 623
Score = 54.3 bits (129), Expect = 2e-08
Identities = 22/37 (59%), Positives = 29/37 (77%)
Frame = +2
Query: 100 KSGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIG 136
K +G+KK+LVFY+GR PKG KT+W+MHE+RL G
Sbjct: 35 KGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEG 145
>CB827481
Length = 556
Score = 54.3 bits (129), Expect = 2e-08
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 11 PGFRFHPTDEELIVHYLCNQATSKPCPASIIPE-VDIYKFDPWELPDKSEFEEN 63
PGFRFHPTDEEL+ YL + K +I E +D+YK+DPW S F+EN
Sbjct: 224 PGFRFHPTDEELVSFYLRRKLEKKSHVFELIKESIDLYKYDPWNYL-SSNFQEN 382
>AV428176
Length = 416
Score = 53.1 bits (126), Expect = 5e-08
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 11 PGFRFHPTDEELIVHYLCNQATSKPCPASIIPE-VDIYKFDPWELPDKSEFEEN 63
PGFRFHPTDEEL+ YL + K +I E +D+YK+DPW S F+EN
Sbjct: 204 PGFRFHPTDEELVGFYLRRKLEKKSHVFELIKESIDLYKYDPWN-HLSSNFQEN 362
>AV416309
Length = 277
Score = 41.2 bits (95), Expect = 2e-04
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = +2
Query: 7 SELPPGFRFHPTDEELIVHYLCNQATSK 34
+ L PGFRFHPTDEEL+++YL + K
Sbjct: 194 TSLAPGFRFHPTDEELVIYYLKRKVCGK 277
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,299,690
Number of Sequences: 28460
Number of extensions: 76720
Number of successful extensions: 347
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of query: 271
length of database: 4,897,600
effective HSP length: 89
effective length of query: 182
effective length of database: 2,364,660
effective search space: 430368120
effective search space used: 430368120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC140030.7