BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140028.7 + phase: 0 /pseudo
(703 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18769 similar to GB|CAB81029.1|7269936|ATCHRIV72 cyclic nucleo... 327 5e-90
AI967361 159 1e-39
BP052112 84 8e-17
BP041383 58 4e-09
BP042795 58 6e-09
AW164084 48 5e-06
BP080087 42 4e-04
BP083853 41 7e-04
BP057607 29 2.2
AV773507 29 2.2
AV775050 28 3.8
TC13909 weakly similar to UP|Q94AG3 (Q94AG3) At1g72160/T9N14_8, ... 28 5.0
CB826980 28 6.5
TC8210 homologue to PIR|T10586|T10586 small nuclear ribonucleopr... 27 8.5
BP036172 27 8.5
>TC18769 similar to GB|CAB81029.1|7269936|ATCHRIV72 cyclic nucleotide and
calmodulin-regulated ion channel-like protein
{Arabidopsis thaliana;} , partial (29%)
Length = 646
Score = 327 bits (837), Expect = 5e-90
Identities = 159/214 (74%), Positives = 179/214 (83%)
Frame = +2
Query: 405 DTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVR 464
DTE WM HRQLP L+ VRR Q++W+ATRGVDEE ILR LP DLRRDI+RHLCL+LVR
Sbjct: 5 DTEEWMRHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVR 184
Query: 465 QVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTG 524
+VP F QMDD++LDAICERL +L T GT IVREGDPV EMLFI+RGRLDS TTNGGR+G
Sbjct: 185 RVPFFSQMDDQLLDAICERLISSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSG 364
Query: 525 FFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQF 584
FFN+ + GDFCGEELL WAL P+ T LPSSTRTV+A++EVEAFAL AEDLKFVA QF
Sbjct: 365 FFNSIILRPGDFCGEELLSWALLPKSTVNLPSSTRTVKALSEVEAFALRAEDLKFVANQF 544
Query: 585 RRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRY 618
RRL SK+L+ TFRFYSH WRTWAACFIQAAW RY
Sbjct: 545 RRLRSKKLQHTFRFYSHHWRTWAACFIQAAWRRY 646
>AI967361
Length = 358
Score = 159 bits (403), Expect = 1e-39
Identities = 78/104 (75%), Positives = 90/104 (86%)
Frame = +2
Query: 497 REGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPS 556
REGDPVDEMLFI+RG+L + TTNGGRTGFFN+ + +GDFCGEELL WALDP ++ LP
Sbjct: 11 REGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPI 190
Query: 557 STRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYS 600
STRTV+ + EVEAFAL A+DLKFVA+QFRRLHSKQLR TFRFYS
Sbjct: 191 STRTVQTLAEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYS 322
>BP052112
Length = 553
Score = 84.0 bits (206), Expect = 8e-17
Identities = 55/143 (38%), Positives = 79/143 (54%), Gaps = 12/143 (8%)
Frame = -2
Query: 495 IVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAV- 553
I+ +G +++M+F+VRG+L+S +G R + GD CGEEL+ W L+ +
Sbjct: 552 ILSQGSLIEKMVFVVRGKLESIGEDGTRMP------LSEGDACGEELMTWYLEHSSVSSD 391
Query: 554 -----LPS----STRTVRAITEVEAFALIAEDLKFVAAQFRR-LHSKQLRQTFRFYSHQW 603
LP S RTV+ +T VEAF+L A DL+ V F R L S Q++ R+ S W
Sbjct: 390 GRKVRLPGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRFLRSPQVQGALRYESPYW 211
Query: 604 RTWAACFIQAAW-FRYKRMKETN 625
R+ AA IQ AW +R KR+ N
Sbjct: 210 RSLAANRIQVAWRYRQKRLSRVN 142
>BP041383
Length = 476
Score = 58.2 bits (139), Expect = 4e-09
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = -2
Query: 603 WRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSY 662
WRTWAACFIQAAW RY + K +KE+EN + + K G S A +
Sbjct: 475 WRTWAACFIQAAWRRYSKRKLEESLKEEENRLQDALAKQGGTSPS--LGATIYA------ 320
Query: 663 SMYSGKLVGSLRRG--RSMRYGSELDMLGTLRKPIEPDF 699
S ++ + +LRR R R L + L+KP EPDF
Sbjct: 319 SRFAANALRALRRNNTRKTRVPERLPPI-LLQKPAEPDF 206
>BP042795
Length = 470
Score = 57.8 bits (138), Expect = 6e-09
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 86 VFDPRGPRINLWNKIFLAACLISLFVDPLFFY-LPVAKK-EKCIDMSIGLEVSLTIIRTF 143
V DPR R+ +WN+ L A ++L +DPLFFY L + + C+ M GL +T+ RT
Sbjct: 258 VVDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGRAGSPCLYMDGGLAAMVTVARTC 437
Query: 144 VDAFYIIHIYI 154
VDA ++H+++
Sbjct: 438 VDAVXLLHVWL 470
>AW164084
Length = 394
Score = 48.1 bits (113), Expect = 5e-06
Identities = 24/68 (35%), Positives = 44/68 (64%)
Frame = +3
Query: 315 FQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILG 374
F++GI+ A+ + I+S++ K Y ++WGL LS+ G +L ++ E+ F++ + + G
Sbjct: 192 FKYGIYQWALPV-ISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSDWLEVIFSICIVLSG 368
Query: 375 LVLFALLI 382
L+LF LLI
Sbjct: 369 LLLFTLLI 392
>BP080087
Length = 382
Score = 41.6 bits (96), Expect = 4e-04
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = -1
Query: 423 VRRHDQFRWVATRGVDEEAILRDLPVDLRRD 453
VR+ +++ W ATRGV+EE ++ +LP DL+RD
Sbjct: 325 VRQAERYNWAATRGVNEEMVMENLPEDLQRD 233
>BP083853
Length = 455
Score = 40.8 bits (94), Expect = 7e-04
Identities = 28/95 (29%), Positives = 42/95 (43%)
Frame = -3
Query: 605 TWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSM 664
TWA CFIQAAW RY + K ++E+E+ + V N + A + K
Sbjct: 453 TWATCFIQAAWHRYCKKKIERTLREEED--KLKGVLAIENGSTLSLGATIYASK------ 298
Query: 665 YSGKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDF 699
++ K + +LR + + KP EPDF
Sbjct: 297 FAAKALRNLRENSRQSRTPQRLLPLLPPKPAEPDF 193
>BP057607
Length = 527
Score = 29.3 bits (64), Expect = 2.2
Identities = 14/54 (25%), Positives = 30/54 (54%)
Frame = +2
Query: 3 QYLFFQKKICLVLKLSVIVNSIRFHDDLEKEKLQEGEESHMEMRAYEMSSEYKH 56
Q+ FF +IC+ L++ NSI+ +++++ Q E+ H+ A +++ H
Sbjct: 35 QFFFFISQICIKLEVQGYFNSIQ*QNEIQRPN-QNKEQRHLTALATKVTPNVDH 193
>AV773507
Length = 496
Score = 29.3 bits (64), Expect = 2.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 91 GPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEV 135
GP I LW ++ +AA ++++ +L V E +DM I LEV
Sbjct: 378 GPEIVLWQEVVVAAGVVAV------HFLHVLGMEVLVDMGIALEV 494
>AV775050
Length = 382
Score = 28.5 bits (62), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 587 LHSKQLRQTFRFYSHQWRTWAACFIQAAW-FRYKRMKETN 625
L Q++ R+ S WR+ AA IQ AW +R R+ N
Sbjct: 332 LRRPQVQGALRYESPYWRSLAANRIQVAWRYRQTRLSRVN 213
>TC13909 weakly similar to UP|Q94AG3 (Q94AG3) At1g72160/T9N14_8, partial
(20%)
Length = 399
Score = 28.1 bits (61), Expect = 5.0
Identities = 18/46 (39%), Positives = 23/46 (49%)
Frame = +1
Query: 294 NRNAWLKSSNLSGLCDQNSHFFQFGIFDDAVTLEITSSNFLTKYYY 339
NRN WL S + LC Q F +A T +ITSS FL + +
Sbjct: 40 NRNPWLPSCFILLLCHQTMR*FL-----NAETKKITSSRFLRTWVH 162
>CB826980
Length = 611
Score = 27.7 bits (60), Expect = 6.5
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Frame = +3
Query: 590 KQLRQTFRFYSHQWR----------TWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNV 639
+ LR+ F YS W+ +W A + R K+ + KEN++ + ++
Sbjct: 315 RNLRKNFSDYS--WKLGSNQGAAADSWMALMDRLLTLRDDCTKKNEKQHVKENILKLIDI 488
Query: 640 KYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRS 678
Y D + L++P + MY + RGRS
Sbjct: 489 YYQAIDAPKQGGGKLRIPNDLTVEMYP----HYMERGRS 593
>TC8210 homologue to PIR|T10586|T10586 small nuclear
ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana {Arabidopsis
thaliana;}, partial (16%)
Length = 698
Score = 27.3 bits (59), Expect = 8.5
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -2
Query: 395 RLEEWRIRRTDTERWMHH---RQLPHYLKENVRRHDQFRWVATRGVDEEA 441
R W R R HH R+ PH+ +RR+ RW TR + A
Sbjct: 175 RWRSWHSRARRRWRSPHHLPRRRWPHWSLPKLRRNPILRWRTTRSRSKTA 26
>BP036172
Length = 569
Score = 27.3 bits (59), Expect = 8.5
Identities = 20/64 (31%), Positives = 34/64 (52%)
Frame = -1
Query: 632 NLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGSELDMLGTL 691
NL+ N+ N + L+V GS +++ +G LVG L+ GR +GS L + G +
Sbjct: 536 NLLESYNLTAVKNASAVTDLQRLEVLAGSYFAV-AGALVGILKPGRMSMFGSLLIIWGLV 360
Query: 692 RKPI 695
++ I
Sbjct: 359 KEGI 348
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,661,737
Number of Sequences: 28460
Number of extensions: 213399
Number of successful extensions: 1443
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of query: 703
length of database: 4,897,600
effective HSP length: 97
effective length of query: 606
effective length of database: 2,136,980
effective search space: 1295009880
effective search space used: 1295009880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC140028.7