TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140028.4 - phase: 2 /pseudo
         (30 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8397 similar to UP|Q9RV45 (Q9RV45) S-layer-like array-related ...    24  8.2

>TC8397 similar to UP|Q9RV45 (Q9RV45) S-layer-like array-related protein,
           partial (5%)
          Length = 1357

 Score = 23.9 bits (50), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (56%)
 Frame = +2

Query: 1   HSLQTEVRKREEKEAAEALRRDQELREA 28
           HSLQ  +RK + +   E +  D E+ +A
Sbjct: 332 HSLQR*IRKSQTRSGGEEIGEDSEVFQA 415


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.306    0.120    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,990
Number of Sequences: 28460
Number of extensions: 518
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 30
length of database: 4,897,600
effective HSP length: 6
effective length of query: 24
effective length of database: 4,726,840
effective search space: 113444160
effective search space used: 113444160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (23.5 bits)