TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140025.16 - phase: 0 
         (801 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI417841                                                               71  8e-13
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi...    63  2e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ...    59  4e-09
AV427422                                                               55  4e-08
BF177840                                                               48  5e-06
TC17862                                                                28  5.7
TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial ...    28  5.7
AV778839                                                               28  7.4
TC18795                                                                28  7.4
AV409405                                                               27  9.7
TC16905 similar to UP|Q8GUE9 (Q8GUE9) Tyrosine aminotransferase ...    27  9.7

>BI417841 
          Length = 617

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
 Frame = +1

Query: 216 NSKWGLVFDGAV--NAYGKGIGAVIVSLQGHHIPFTARILFECTNNMAEYEACIFGIEEA 273
           N    L FDG+   N    G GAV+ +  G  + +    +   TNN AEY   I G++ A
Sbjct: 127 NRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 303

Query: 274 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 333
            +   +H+++ GDS LV  Q++G W+  +  +    + A+ L + F   +++H+PR  N 
Sbjct: 304 HEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNS 483

Query: 334 MADALATLSSMFRVNH 349
            AD  A L       H
Sbjct: 484 EADVQANLGVNLPAGH 531


>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
           (Fragment), partial (10%)
          Length = 572

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 36/96 (37%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
 Frame = +2

Query: 583 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-KRIVQKMVTTYKDWHE 641
           +NG    +   Q  C+   I+   SS   PQ NG  EAANK I K I +++      W +
Sbjct: 8   ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187

Query: 642 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 677
            LP  L  Y T  +SS   TPF L YG + +LP+E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295


>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
          Length = 632

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 29/91 (31%), Positives = 44/91 (47%)
 Frame = +2

Query: 263 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKV 322
           Y   I G++ AI    KH+ + GDS LV NQ++G W+  +  +      A+ L   F   
Sbjct: 2   YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181

Query: 323 ELHHIPRDENQMADALATLSSMFRVNHWNDV 353
           +++HIPR+ N  AD  A      R     +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274


>AV427422 
          Length = 417

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 33/133 (24%), Positives = 63/133 (46%), Gaps = 2/133 (1%)
 Frame = +1

Query: 532 SNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 590
           S G+  +LV +D  +K+       +  T +V+A      ++  +GVP  I++D      +
Sbjct: 19  SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198

Query: 591 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHG 649
           N  + L +    +   S+ Y P+ +G  E  N+ ++  ++  +    K W   +P+A + 
Sbjct: 199 NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378

Query: 650 YRTTVRSSTGATP 662
           Y T+   STG TP
Sbjct: 379 YNTSYHVSTGQTP 417


>BF177840 
          Length = 410

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 26/101 (25%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 578 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVT-TY 636
           + I++D  T   ++  + L  +   +   S+   PQ +G  E  NK +  +++ ++    
Sbjct: 11  TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190

Query: 637 KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 677
           K W   LP+    Y   V S+T  +PF +VYG   + PL++
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313


>TC17862 
          Length = 545

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/63 (26%), Positives = 30/63 (46%)
 Frame = +2

Query: 96  ETRYTMLAKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQMLLS 155
           E  YTM  +  C L     +++ +L+ H  WL+    P ++I    +VT     W+M  S
Sbjct: 23  EDDYTMKRRLGCHL-----QVQIHLLRHLLWLLRHFLP*RHIRMMHLVTSCTLLWKM*CS 187

Query: 156 EYD 158
            ++
Sbjct: 188 SFE 196


>TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial (25%)
          Length = 562

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +1

Query: 566 IKNNIICRYGVPSKIITDNGTNLNNN----VVQALCEEFKIEHHN 606
           + N I  +YG P  +IT+NG +  NN    +  AL +E +I ++N
Sbjct: 76  LMNYIKQKYGNPLVVITENGMDDPNNPFISIKDALKDEKRIRYYN 210


>AV778839 
          Length = 538

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
 Frame = -3

Query: 350 WNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLS--REYPSGASK 406
           WN  PI  + R    S    + D+ID   +N++D      ++KQ  +S  +E P GA +
Sbjct: 524 WNPCPIGMLPRAVGSSGCLPVLDIIDYVKQNLID------NVKQNPVSERKEMPHGAQR 366


>TC18795 
          Length = 755

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/31 (51%), Positives = 20/31 (63%)
 Frame = +1

Query: 41  YLLEPPILVPPVEGRPLILYLSVFDESVGCV 71
           +LLEPP LVPP+    L L  S+ D  +GCV
Sbjct: 550 WLLEPP-LVPPL----LFLPASILDNILGCV 627


>AV409405 
          Length = 424

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 486 HARKCHKCQIYADKIHVPPHALNVISSPW 514
           H +KC  C +   KI V P  LN + S W
Sbjct: 35  HCKKCCACHLIYRKISVLPGNLNNLPSNW 121


>TC16905 similar to UP|Q8GUE9 (Q8GUE9) Tyrosine aminotransferase  , partial
           (37%)
          Length = 610

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/54 (24%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
 Frame = -1

Query: 563 AKFIKNNIICRYGVPSKIITDNG-----TNLNNNVVQALCEEFKIEHHNSSPYR 611
           AK I++  +    VP ++ITD+          ++++ +  E  +  HH+  P+R
Sbjct: 412 AKVIRSQSLSPTAVPGRMITDSSFASLKEKSMSSLISSSSEXIQFHHHSHGPFR 251


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,491,226
Number of Sequences: 28460
Number of extensions: 209769
Number of successful extensions: 962
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of query: 801
length of database: 4,897,600
effective HSP length: 98
effective length of query: 703
effective length of database: 2,108,520
effective search space: 1482289560
effective search space used: 1482289560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)