BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140025.11 + phase: 0
(217 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8915 similar to UP|Q8VYH4 (Q8VYH4) AT5g15260/F8M21_150, partia... 191 6e-50
TC16506 homologue to UP|Q8VYH4 (Q8VYH4) AT5g15260/F8M21_150, par... 135 7e-33
TC16212 35 0.010
AV417025 28 1.2
BP035314 28 1.2
AW428664 27 2.7
TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodula... 27 3.5
TC14557 similar to UP|HD1_BRANA (P46606) Homeobox protein HD1, p... 27 3.5
TC19421 PIR|S04520|S04520 histone H3 (clone pH3c-1) - alfalfa {M... 26 6.0
TC12857 similar to UP|TLC1_ARATH (Q39002) Chloroplast ADP,ATP ca... 26 6.0
TC14470 similar to UP|AAQ56728 (AAQ56728) Polygalacturonase inhi... 26 6.0
TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, p... 25 7.9
AV407810 25 7.9
TC16470 weakly similar to UP|AAQ89634 (AAQ89634) At1g14020, part... 25 7.9
TC18695 25 7.9
>TC8915 similar to UP|Q8VYH4 (Q8VYH4) AT5g15260/F8M21_150, partial (29%)
Length = 575
Score = 191 bits (486), Expect = 6e-50
Identities = 91/113 (80%), Positives = 99/113 (87%)
Frame = +1
Query: 105 VSCAVVATWFFIAYTSRKCSNPNCKGLKNAAEFDIQLETEDCVKNSPSLGKDGGGIKKGL 164
V+CAV TW +A T+RKC N CKGLK AAEFDIQLETEDCVKNSPSL KDG +KKGL
Sbjct: 4 VACAVFTTWLLVASTTRKCGNRYCKGLKKAAEFDIQLETEDCVKNSPSLSKDGT-VKKGL 180
Query: 165 FKIPCDHHRELEAELKKMAPVNGRAVLVLRGKCGCSVGRLEVPGPKKNRKIKK 217
FK+PC+HHRELEAELKKMAP NGRAVLVLR KCGCSVGRLEVPGP+KNRK+KK
Sbjct: 181 FKLPCEHHRELEAELKKMAPPNGRAVLVLRAKCGCSVGRLEVPGPRKNRKMKK 339
>TC16506 homologue to UP|Q8VYH4 (Q8VYH4) AT5g15260/F8M21_150, partial (28%)
Length = 652
Score = 135 bits (339), Expect = 7e-33
Identities = 66/91 (72%), Positives = 74/91 (80%), Gaps = 12/91 (13%)
Frame = +2
Query: 139 IQLETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELEAELKKMAPVNGRAVLVLRGKCG 198
IQLETEDCVKNSPSL +DGG +KKGLF++P DHHRELEAELKKMAP NGRAVL+LR +CG
Sbjct: 2 IQLETEDCVKNSPSLSQDGGDVKKGLFELPRDHHRELEAELKKMAPPNGRAVLILRARCG 181
Query: 199 CSVGRLEVP------------GPKKNRKIKK 217
CSVGRLEVP GPKK+RK+KK
Sbjct: 182 CSVGRLEVPGHKKPVGRIEVLGPKKHRKVKK 274
>TC16212
Length = 549
Score = 35.0 bits (79), Expect = 0.010
Identities = 30/63 (47%), Positives = 35/63 (54%), Gaps = 18/63 (28%)
Frame = +2
Query: 1 MVNFHSLIS---SVDQSSS-SMANSIDLA----KSRNRKTL----------NSLQIPQCE 42
MV FHS IS SVDQ + +MANSI + KSR +L NSLQIP C+
Sbjct: 359 MVYFHSSISLCKSVDQPPAPAMANSICSSDFGSKSRQSNSLQRNRRGPSSSNSLQIPPCD 538
Query: 43 RSR 45
RSR
Sbjct: 539 RSR 547
>AV417025
Length = 424
Score = 28.1 bits (61), Expect = 1.2
Identities = 15/31 (48%), Positives = 18/31 (57%)
Frame = +3
Query: 137 FDIQLETEDCVKNSPSLGKDGGGIKKGLFKI 167
FD QLE C ++S S KDGG K +F I
Sbjct: 21 FDFQLE*SSC*QHSRS*TKDGGSSFKTIFAI 113
>BP035314
Length = 580
Score = 28.1 bits (61), Expect = 1.2
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 31 KTLNSLQIPQCERSRSAVVDVVIFIAVVIALGFL-VFPYIQFVMSES 76
KT N LQIP C V +VIF+ + + L F+ +FP I+ + +S
Sbjct: 181 KTKNKLQIPFCISLVD*VDMLVIFVFIPLPLTFVTIFPRIRKCIEKS 41
>AW428664
Length = 370
Score = 26.9 bits (58), Expect = 2.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 62 GFLVFPYIQFVMSESFKLCG 81
GF ++PY F+ S F++CG
Sbjct: 242 GFQIWPYFVFIRSVVFQICG 301
>TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodulation aberrant
root formation protein), complete
Length = 3308
Score = 26.6 bits (57), Expect = 3.5
Identities = 21/82 (25%), Positives = 38/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 82 LFMDLVKEEVAVAPVIYVSLGVSVSCAVVATWFFIAYTSRKCSNPNCKGLKNAAEFDIQL 141
L+ L K A V + +G++++ AV+ + + RK + K A +++
Sbjct: 1991 LYDSLRKTRAKTARVRAIVIGIALATAVLLVAVTV-HVVRKRRLHRAQAWKLTAFQRLEI 2167
Query: 142 ETED---CVKNSPSLGKDGGGI 160
+ ED C+K +GK G GI
Sbjct: 2168 KAEDVVECLKEENIIGKGGAGI 2233
>TC14557 similar to UP|HD1_BRANA (P46606) Homeobox protein HD1, partial
(84%)
Length = 1456
Score = 26.6 bits (57), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 151 PSLGKDGGGIKKGLFKIPCDHHRELEAEL 179
P+LG GGG + HHR+L+AE+
Sbjct: 233 PNLGMMGGGFTGDVSASGDHHHRQLKAEI 319
>TC19421 PIR|S04520|S04520 histone H3 (clone pH3c-1) - alfalfa {Medicago
sativa;}, complete
Length = 672
Score = 25.8 bits (55), Expect = 6.0
Identities = 14/44 (31%), Positives = 20/44 (44%), Gaps = 3/44 (6%)
Frame = -1
Query: 104 SVSCAVVATWFFIAYT---SRKCSNPNCKGLKNAAEFDIQLETE 144
S C W F Y S + NCKG++ E +I++E E
Sbjct: 144 SAPCLRWIFWRFALYEPSGSGNVTGENCKGIEIEIEIEIEIEIE 13
>TC12857 similar to UP|TLC1_ARATH (Q39002) Chloroplast ADP,ATP carrier
protein 1, chloroplast precursor (ADP/ATP translocase 1)
(Adenine nucleotide translocase 1), partial (28%)
Length = 750
Score = 25.8 bits (55), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 51 VVIFIAVVIALGFLVFPYIQFVMSESF 77
+V FIA A GFL++P ++ E+F
Sbjct: 563 IVPFIAFFGAFGFLLYPLSSYIHPEAF 643
>TC14470 similar to UP|AAQ56728 (AAQ56728) Polygalacturonase inhibiting
protein, partial (93%)
Length = 1195
Score = 25.8 bits (55), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +3
Query: 2 VNFHSLISSVDQSSSSMANSIDLAKSRNRKT 32
++F++L + S S + N IDL RNR T
Sbjct: 447 LSFNNLTGPIPSSLSKLPNLIDLRLDRNRLT 539
>TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, partial
(59%)
Length = 564
Score = 25.4 bits (54), Expect = 7.9
Identities = 19/92 (20%), Positives = 40/92 (42%), Gaps = 1/92 (1%)
Frame = -2
Query: 46 SAVVDVVIFIAVVIALGFLVFPYIQFVMSESFKLCGLFMDLVKEEVAVAP-VIYVSLGVS 104
+A V V+ + +++ L L+ + V+ F L +DLV + V P ++ + L +S
Sbjct: 305 AATVMVMAMLVLLLLLVLLILLVLLVVLLTLFVTVDLILDLVHNPLLVLPSMVLI*LVLS 126
Query: 105 VSCAVVATWFFIAYTSRKCSNPNCKGLKNAAE 136
+ +F + + + K L N +
Sbjct: 125 FVSITMVLFFLVVLLLFLVPSSHMKSLSNLVD 30
>AV407810
Length = 417
Score = 25.4 bits (54), Expect = 7.9
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 41 CERSRSAVVDVVIFIAV-VIALGFLVFPYIQF-VMSESFKLCGLFMDLVK 88
C++S + ++I+ A+ ++ F + I ++ ESF LC +DL++
Sbjct: 72 CQQSCLSETLLIIWYAIPILGSSFHILQIIDSNILGESFDLCNFVLDLIR 221
>TC16470 weakly similar to UP|AAQ89634 (AAQ89634) At1g14020, partial (10%)
Length = 765
Score = 25.4 bits (54), Expect = 7.9
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -2
Query: 142 ETEDCVKNSPSLGKDGGGIKKGLFKIPCDHHRELEAELKKMAPVN 186
E + + +P KDGGG+KK K+ + R+LE E K P+N
Sbjct: 677 EQTNVILYNPENHKDGGGLKKERKKVYI-YIRKLEKE--KQIPMN 552
>TC18695
Length = 360
Score = 25.4 bits (54), Expect = 7.9
Identities = 13/40 (32%), Positives = 24/40 (59%)
Frame = -1
Query: 66 FPYIQFVMSESFKLCGLFMDLVKEEVAVAPVIYVSLGVSV 105
FPYI+++ ++ L + L+ + P++YV LG+SV
Sbjct: 105 FPYIKWLENQKRSLLKPYFILL-----LCPLVYVYLGISV 1
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,842,836
Number of Sequences: 28460
Number of extensions: 49304
Number of successful extensions: 266
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of query: 217
length of database: 4,897,600
effective HSP length: 87
effective length of query: 130
effective length of database: 2,421,580
effective search space: 314805400
effective search space used: 314805400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC140025.11