BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140024.11 + phase: 0
(381 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18923 UP|CAE45594 (CAE45594) S-receptor kinase-like protein 1,... 56 1e-08
TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3,... 53 7e-08
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 39 0.001
TC8359 similar to UP|Q39436 (Q39436) SIEP1L protein precursor, p... 33 0.10
CB826997 30 0.67
AV780063 28 2.5
BP063176 28 2.5
TC14660 similar to UP|Q9LRZ0 (Q9LRZ0) Genomic DNA, chromosome 3,... 28 3.3
BP068646 27 4.3
TC10231 similar to UP|O23110 (O23110) AP2 domain containing prot... 27 4.3
AV765450 27 5.6
BP034242 27 7.4
TC9646 weakly similar to UP|Q7NWC9 (Q7NWC9) Serine protease MucD... 27 7.4
TC12927 similar to UP|Q940G7 (Q940G7) G protein-coupled receptor... 27 7.4
AV407706 27 7.4
TC14302 similar to UP|Y230_ARATH (O80934) Protein At2g37660, chl... 26 9.6
>TC18923 UP|CAE45594 (CAE45594) S-receptor kinase-like protein 1, complete
Length = 2061
Score = 55.8 bits (133), Expect = 1e-08
Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 60/367 (16%)
Frame = +1
Query: 46 LCSKQGKFCLQF---GNNSNSDFQCLFISVNADYGKVVWVYDINHSIDFNTSVLSLDYSG 102
L S +G F F GN+ F + S++ +VWV + + + +T+ + L G
Sbjct: 70 LVSAEGTFEAGFFGLGNSQRQYFGIWYKSISPR--TIVWVANRDAPVQNSTATIKLTDKG 243
Query: 103 VLKIESQNRKPIIIYSSPQPTNNTVATMLDAGNFVLQQFLPNGSMSVLWQSFDYPSDVLI 162
L I ++ I + + +LD+GN V++ +++W+SFDYP D L+
Sbjct: 244 NLLILDGSKGIIWSSNGSRAAEKPYMQLLDSGNLVVKDG-GKRKKNLIWESFDYPGDTLL 420
Query: 163 PMMKLGVNRKTGHNWSLVSDKFNLEWEPKQGE------------LNIKKSGKVYWK---- 206
MK+ N G L S + N E +P GE L I ++ Y++
Sbjct: 421 AGMKIKSNLVKGPTSYLTSWR-NTE-DPASGEFSYLIDTRGFPQLVITRNATAYYRAGPW 594
Query: 207 SGKLKSNGLF---------------ENIPANVQSRYQYIIVSNKDEDSFTFE--VKDGKF 249
+GKL S + + I ++ + II S T + + +
Sbjct: 595 TGKLFSGSSWLRLRKILTFSMQFTSQEISLEYETANRSIITRAVINPSGTTQRLLWSDRS 774
Query: 250 AQWELSSKGK--------LVGDDGY--IANADMCY--------------GYNSDGGCQKW 285
WE+ S L G + I+N +C+ ++ GGC
Sbjct: 775 QSWEIISTHPTDQCTYYGLCGANSMCDISNNPICHCLEGFRPKFQAKWNSFDWPGGCVPM 954
Query: 286 EDIPTCREPGEMFQKKAGRPSIDNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQLYYSNMT 345
+++ +C+ G+ F K G D S+++ + S +C C +NCSC + +++
Sbjct: 955 KNL-SCQN-GDGFLKHTGVKLPDTSSSW-YGKNKSLDECGTLCLQNCSCTSYAYLDNDIG 1125
Query: 346 GCVFLSW 352
G L W
Sbjct: 1126GSACLIW 1146
>TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3, complete
Length = 2481
Score = 53.1 bits (126), Expect = 7e-08
Identities = 43/154 (27%), Positives = 76/154 (48%), Gaps = 3/154 (1%)
Frame = +1
Query: 46 LCSKQGKF---CLQFGNNSNSDFQCLFISVNADYGKVVWVYDINHSIDFNTSVLSLDYSG 102
L S +G F +FGN+ F + S++ +VWV + + + +T+ L L G
Sbjct: 37 LVSPEGTFEAGFFRFGNSLRRYFGIWYKSISPR--TIVWVANRDAPVQNSTATLKLTDQG 210
Query: 103 VLKIESQNRKPIIIYSSPQPTNNTVATMLDAGNFVLQQFLPNGSMSVLWQSFDYPSDVLI 162
L I + + ++ + + + +LD+GNFV++ + +++W+SFDYP D +
Sbjct: 211 NLLILDGLKGIVWSSNASRTKDKPLMQLLDSGNFVVKD--GDKEENLIWESFDYPGDTFL 384
Query: 163 PMMKLGVNRKTGHNWSLVSDKFNLEWEPKQGELN 196
MK+ N TG L S + N E +P GE +
Sbjct: 385 AGMKIKSNLATGPTSYLTSWR-NAE-DPASGEFS 480
Score = 32.7 bits (73), Expect = 0.10
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 280 GGCQKWEDIPTCREPGEMFQKKAGRPSIDNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQL 339
GGC +++ +C+ G+ F K G D S+++ + + S +C C +NCSC +
Sbjct: 901 GGCVPIKNL-SCQN-GDGFPKHTGVQFPDTSSSW-YGNSKSLDECGTICLQNCSCTAY-A 1068
Query: 340 YYSNMTG-CVFLSW 352
Y N+ G V L+W
Sbjct: 1069YLDNVGGRSVCLNW 1110
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 38.9 bits (89), Expect = 0.001
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +1
Query: 79 VVWVYDINHSIDFNTS-VLSLDYSGVLKIESQNRKPIIIYSSPQPTNNTVATMLDAGNFV 137
+VWV + + + +T+ L + + G + I + I ++ + +LD+GN V
Sbjct: 361 IVWVANRDAPLRNSTAPTLKVTHKGSILIRDGAKGVIWSTNTSRAKEQPFMQLLDSGNLV 540
Query: 138 LQQFLPNGSMSVLWQSFDYPSDVLIPMMKLGVNRKTGHNWSLVSDKFNLEWEPKQGELN 196
+ + +V+W+SF+YP D + MK+ N G L S + N E +P GE +
Sbjct: 541 AKD--GDKGENVIWESFNYPGDTFLAGMKIKSNLAIGPTSYLTSWR-NSE-DPASGEFS 705
Score = 37.0 bits (84), Expect = 0.005
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +1
Query: 280 GGCQKWEDIPTCREPGEMFQKKAGRPSIDNSTTYEFDVTYSYSDCKIRCWKNCSCNGFQL 339
GGC E + +C+ G+ F K G D S+++ F S +C+ C +NCSC +
Sbjct: 1126 GGCVSMEKL-SCQN-GDGFMKHTGVKLPDTSSSW-FGKNMSLDECRTLCLQNCSCTAYAG 1296
Query: 340 YYSNMTGCVFLSW 352
+++ V L W
Sbjct: 1297 LDNDVDRSVCLIW 1335
>TC8359 similar to UP|Q39436 (Q39436) SIEP1L protein precursor, partial
(50%)
Length = 767
Score = 32.7 bits (73), Expect = 0.10
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Frame = +3
Query: 140 QFLPNGSMSVL-------WQSFDYPSDVLIP------------MMKLGVNRKTGHNWSLV 180
+ LPNG+M +L WQSFD+P+D ++ + +L +SLV
Sbjct: 435 RLLPNGNMVLLDANGKFVWQSFDHPTDTILVGQYLRAGGPRELVSRLSEKENVNGPYSLV 614
Query: 181 --SDKFNLEWEPKQGELNIKKSGKVYWKSGKLKS 212
S L ++PK I+ + Y + G L++
Sbjct: 615 LESKGLGLYYKPKNAPKPIRYWSESYVEKGSLEN 716
>CB826997
Length = 563
Score = 30.0 bits (66), Expect = 0.67
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +3
Query: 132 DAGNFVLQQFLPNGSMSVLWQSFDYPSDVLIPMMKL 167
D GNFVL+ + + + +W+SF P D L+P L
Sbjct: 345 DTGNFVLE----DDNSNTVWESFKDPRDTLLPSQVL 440
>AV780063
Length = 506
Score = 28.1 bits (61), Expect = 2.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 324 CKIRCWKNCSCNGFQ 338
CKI CWKN +C G++
Sbjct: 243 CKICCWKNLNCLGWE 199
>BP063176
Length = 482
Score = 28.1 bits (61), Expect = 2.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 324 CKIRCWKNCSCNGFQ 338
CKI CWKN +C G++
Sbjct: 300 CKICCWKNLNCLGWE 256
>TC14660 similar to UP|Q9LRZ0 (Q9LRZ0) Genomic DNA, chromosome 3, TAC
clone:K20I9, partial (7%)
Length = 559
Score = 27.7 bits (60), Expect = 3.3
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 80 VWVYDINHSIDFNTSVLSLDYSGVLKIESQNRKPIIIYSSPQPTNNTVATMLDAGNFVLQ 139
+ V+D + S+ + S Y SQN P+++ + PQ N + D G V++
Sbjct: 29 IGVFDAD-SLRLRCRIASSAYLHQTSSNSQNIFPVVVAAHPQEPNPFAVGLSDGGIKVIE 205
Query: 140 QFLPNGSMSV 149
NG V
Sbjct: 206 PIESNGRWGV 235
>BP068646
Length = 491
Score = 27.3 bits (59), Expect = 4.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 216 FENIPANVQSRYQYIIVSNKDEDSFTFEVKDGKFAQWELSSKGKLVGDDGY-IANADMCY 274
FE++PA+ +S + + + D ++++ S G G G + +
Sbjct: 465 FEDVPAHSESALLKAVANQPISVAI-----DASGSEFQCYSSGVFTGSCGTELDHGVTAV 301
Query: 275 GYNSDGGCQKW 285
GY SDGG Q W
Sbjct: 300 GYGSDGGTQYW 268
>TC10231 similar to UP|O23110 (O23110) AP2 domain containing protein RAP2.8
(Fragment), partial (22%)
Length = 707
Score = 27.3 bits (59), Expect = 4.3
Identities = 16/52 (30%), Positives = 20/52 (37%), Gaps = 6/52 (11%)
Frame = -1
Query: 328 CWKN------CSCNGFQLYYSNMTGCVFLSWNSTQYVDMVPDKFYTLVKTTK 373
CW N C CN +Y+ GC L + + KF T K TK
Sbjct: 665 CWSNNIQITFCCCNWPTTHYTPPFGCYLLQFANLHSFPHESQKFKTHKKETK 510
>AV765450
Length = 586
Score = 26.9 bits (58), Expect = 5.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 243 EVKDGKFAQWELSSKGKLVGDDGYIANADMCY 274
EVK F+ E ++ +++G+ G+ + D C+
Sbjct: 372 EVKSADFSPLEFLNQIRIIGESGFPVSTDQCF 277
>BP034242
Length = 539
Score = 26.6 bits (57), Expect = 7.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 47 CSKQGKFCLQFGNNSNSDFQCLFIS 71
CS FC S DF C FIS
Sbjct: 387 CSSHQSFCYSCSWTSGDDFNCCFIS 461
>TC9646 weakly similar to UP|Q7NWC9 (Q7NWC9) Serine protease MucD ,
partial (5%)
Length = 532
Score = 26.6 bits (57), Expect = 7.4
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 106 IESQNRKPIIIYSSPQPTNNTVATMLDAGNFVLQQFLPNGSMSVLWQSFDYPSDVLIPMM 165
IE++ KP+ + +PT V T ++ G + L G + SF D L P
Sbjct: 309 IEAEVDKPLGLTLGQKPTGGVVITAVEGGGNAAKAGLKAGDQVLYTSSFF--GDELWPAD 482
Query: 166 KLGVNR 171
KLG +
Sbjct: 483 KLGFTK 500
>TC12927 similar to UP|Q940G7 (Q940G7) G protein-coupled receptor-like
protein, partial (31%)
Length = 654
Score = 26.6 bits (57), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 199 KSGKVYWKSGKLKSNGLFENIPAN 222
++G+V WKSG +K GL + + N
Sbjct: 167 EAGEVVWKSGLVKKVGLADGVSGN 238
>AV407706
Length = 428
Score = 26.6 bits (57), Expect = 7.4
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Frame = +3
Query: 314 EFDVTYSYSDCKIRCWKNCS--------CNGFQLYYSNMTGCVFLSWNSTQYVDMVPDKF 365
E D +Y D KIRC S C + + S CV + T+ + V DKF
Sbjct: 204 EIDDSYQ-PDTKIRCLCGSSLESETLIKCEDARCHVSQHINCVIIPDKPTEGIPRVLDKF 380
Query: 366 Y 366
Y
Sbjct: 381 Y 383
>TC14302 similar to UP|Y230_ARATH (O80934) Protein At2g37660, chloroplast
precursor, partial (75%)
Length = 1066
Score = 26.2 bits (56), Expect = 9.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 327 RCWKNCSCN 335
RCWK CSCN
Sbjct: 223 RCWKYCSCN 249
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,869,991
Number of Sequences: 28460
Number of extensions: 122300
Number of successful extensions: 696
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of query: 381
length of database: 4,897,600
effective HSP length: 92
effective length of query: 289
effective length of database: 2,279,280
effective search space: 658711920
effective search space used: 658711920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC140024.11