TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.8 - phase: 0 
         (304 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11995                                                                28  1.9
TC18726                                                                26  7.3

>TC11995 
          Length = 726

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 70  RDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRCY 106
           R F T+YLGR  V+  T + ++ EE+   + + +R +
Sbjct: 298 RSFQTNYLGRLTVIHNTLEGKKKEEILFCQVFVLRVF 408


>TC18726 
          Length = 273

 Score = 26.2 bits (56), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 245 VFWYSGWIMCGVRRVYRHLPKRVL 268
           +FWY  WIM  +R  Y  L +RVL
Sbjct: 178 LFWYL*WIMLHLRA*YDILHRRVL 107


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,426,046
Number of Sequences: 28460
Number of extensions: 100078
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of query: 304
length of database: 4,897,600
effective HSP length: 90
effective length of query: 214
effective length of database: 2,336,200
effective search space: 499946800
effective search space used: 499946800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)