TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.4 + phase: 0 
         (299 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB828176                                                              151  1e-37
BP038938                                                              142  7e-35
TC8161 similar to UP|Q8LBV7 (Q8LBV7) Contains similarity to plas...    28  1.4
TC19222                                                                27  3.2
BP074912                                                               27  3.2
BP043412                                                               27  5.5
AV768742                                                               27  5.5
AV423302                                                               26  7.1

>CB828176 
          Length = 363

 Score =  151 bits (382), Expect = 1e-37
 Identities = 71/98 (72%), Positives = 82/98 (83%)
 Frame = +3

Query: 201 EDPIIFKLDLTLMEWKEVRSLNGVTLFASFLSSHSRTYATGIMRNSVYFPKVRFYGKRCI 260
           E+PIIFKLD TLMEW+E+R+L+G TLFASFLSSHSRT   G+MRNSVYF KVRFYGKRCI
Sbjct: 3   ENPIIFKLDQTLMEWEEMRTLDGATLFASFLSSHSRTELPGMMRNSVYFSKVRFYGKRCI 182

Query: 261 SFSLDDRRYYPSEQCRDKVEPNTFENFWIEPPKDFTGW 298
           SFSLDD RYYP +Q  D  E + +EN W+EPPKDF G+
Sbjct: 183 SFSLDDFRYYPRKQWHDWGEQDPYENIWVEPPKDFPGF 296


>BP038938 
          Length = 583

 Score =  142 bits (358), Expect = 7e-35
 Identities = 68/108 (62%), Positives = 79/108 (72%)
 Frame = +3

Query: 1   MYFPKKGNCYDFYDPVQRKTYSLELPELDGCRVCYTKDGWLLLNRQDWRRLDGNHIFSLF 60
           MYFPK G+ Y+FYDPVQRKTYSL++PEL G RVCYTKDGWLLL R         H    F
Sbjct: 276 MYFPKYGDLYEFYDPVQRKTYSLQMPELSGSRVCYTKDGWLLLYR------PRTHRVFFF 437

Query: 61  NPFTRDLITLPKFDRTYQIAAFSCAPTSTGCVILIFRRVGSSLVAIST 108
           NPFTRD+I LP+F+ TYQI AFSCAPTS  CV+   + V  ++VAIST
Sbjct: 438 NPFTRDIIKLPRFEMTYQIVAFSCAPTSPNCVLFTVKHVSPTVVAIST 581


>TC8161 similar to UP|Q8LBV7 (Q8LBV7) Contains similarity to plastid
           ribosomal protein L19, partial (54%)
          Length = 1101

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
 Frame = +2

Query: 180 SKGKFMIEHKGNIFVVHICCGEDPIIF-KLDLTLMEWKEV 218
           S  K ++  +G+I V+  CC  + IIF  L+L+   WK+V
Sbjct: 776 SSSK*LLILQGHILVISFCCVVEYIIFLPLNLSSENWKQV 895


>TC19222 
          Length = 582

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 211 TLMEWKEVRSLNGVTLFASF 230
           TLMEW ++R LNG    +SF
Sbjct: 370 TLMEWSDIRPLNGRFFSSSF 429


>BP074912 
          Length = 519

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = -3

Query: 164 VPPPKCLAESSTAKNWSKGKFMIEHKGNIFVVH-----ICC 199
           VP P C+A    A NW   K +  +  N  V H      CC
Sbjct: 499 VPAPVCIAAHWIAANWGSLKVLCRYSTNFGVKHSGMAGACC 377


>BP043412 
          Length = 467

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 250 PKVRFYGKRCISFSLDDRRYY 270
           PK  FYG+ C +FSL    YY
Sbjct: 403 PKDLFYGRSCPTFSLSAPSYY 465


>AV768742 
          Length = 522

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 14/52 (26%), Positives = 21/52 (39%)
 Frame = -1

Query: 98  RVGSSLVAISTCYPGEKEWTTVYYDAELSCSMCDKLVFSNGLFYCLSDRGWL 149
           ++GS+ V     Y     W  + + +   C MC    F    FYC S   +L
Sbjct: 267 KLGSTSVVEGILYYYHHRWMKI*WPSV*CCKMCSYC*FFA*FFYCFSATSYL 112


>AV423302 
          Length = 452

 Score = 26.2 bits (56), Expect = 7.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 259 CISFSLDDRRYYPSEQCRDK 278
           C SFSL D   YP E C D+
Sbjct: 331 CTSFSLGDSSQYPFEVC*DR 272


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.142    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,296,647
Number of Sequences: 28460
Number of extensions: 124840
Number of successful extensions: 652
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of query: 299
length of database: 4,897,600
effective HSP length: 90
effective length of query: 209
effective length of database: 2,336,200
effective search space: 488265800
effective search space used: 488265800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)