TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.1 - phase: 0 /pseudo
         (406 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780221                                                               30  0.55
TC13049                                                                28  2.8
TC17745                                                                28  3.6
TC14768 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ...    27  4.7
AV426745                                                               27  8.0

>AV780221 
          Length = 461

 Score = 30.4 bits (67), Expect = 0.55
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 2   FFGEGLVEGGKFVGLNGIRCVTRGTRVD*EFKM*SWST*ASWQNGNGVCSKK 53
           F G    EG K +G NG+R V   TR    F+  + ST   W +G+G C ++
Sbjct: 112 FLGGRWREGRK*LG*NGVRFVDPRTRGVWGFRTWACSTRLFWASGDGGCLRR 267


>TC13049 
          Length = 604

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 158 IIFTYNQFWRKGRTRGEENQEKRLP 182
           I+ ++N +WRKGR R ++ +   +P
Sbjct: 531 IV*SFNGYWRKGRARPDQRKRSSVP 457


>TC17745 
          Length = 570

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 18/44 (40%), Positives = 25/44 (55%)
 Frame = +2

Query: 36  SWST*ASWQNGNGVCSKKINLFGRGCWKINMVINVMPSLII*LF 79
           SWS   + + G G+ S+   +F R C KIN +I V   +I *LF
Sbjct: 104 SWSFIRALEYGLGIWSQLPIVFRRSCEKINKIILV--GIIF*LF 229


>TC14768 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
           complex alpha chain, partial (21%)
          Length = 1036

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 176 NQEKRLPNRNTKVRVGLTFNLLKP 199
           N+EK+L   NTKV   LT NLL P
Sbjct: 692 NKEKQLHIPNTKVVPNLTINLLAP 621


>AV426745 
          Length = 420

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 48  GVCSKKINLFGRGC 61
           GVCSK+   FGRGC
Sbjct: 99  GVCSKRCGGFGRGC 140


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.170    0.610 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,403,255
Number of Sequences: 28460
Number of extensions: 81797
Number of successful extensions: 1144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 879
length of query: 406
length of database: 4,897,600
effective HSP length: 92
effective length of query: 314
effective length of database: 2,279,280
effective search space: 715693920
effective search space used: 715693920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 56 (26.2 bits)