BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139853.10 + phase: 0
(342 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 424 e-120
TC11011 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 prote... 219 7e-58
TC11788 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 prote... 180 3e-46
TC8413 weakly similar to UP|Q9ZSE0 (Q9ZSE0) PrMC3, partial (49%) 157 2e-39
TC8656 similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protei... 145 7e-36
TC15384 weakly similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-lik... 144 2e-35
TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%) 58 5e-17
AU089411 74 5e-14
TC9128 69 1e-12
TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Ar... 66 1e-11
AV423956 62 1e-10
AV775512 59 1e-09
TC18964 54 4e-08
TC12874 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (... 50 5e-07
TC18672 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (... 50 7e-07
TC8464 46 1e-05
TC8491 41 3e-04
TC10961 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (... 36 0.011
TC12221 33 0.090
TC14768 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 29 1.0
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 424 bits (1091), Expect = e-120
Identities = 204/337 (60%), Positives = 257/337 (75%)
Frame = +1
Query: 4 PKKPKLPFPLKTRLSISLIMTLTDAACRSNGSVNRRLLNFLDNKTSAKATPINGVSTKDI 63
P KLP+ + RLSI L+ L++ + RSNG+VNRR+ N LD K P++GVS+ D+
Sbjct: 85 PTMAKLPWHV--RLSIFLLSALSNTSRRSNGTVNRRIFNLLDRKVPPNTKPVDGVSSSDV 258
Query: 64 TVDAESKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPASLSYDTICRR 123
T+D +WFRLFTP+ +++A SLP+V+FFHGGGF+FMSP+S+ +DT+CR+
Sbjct: 259 TMDPTRDLWFRLFTPSAASSAA---------SLPLVVFFHGGGFSFMSPSSIQFDTVCRQ 411
Query: 124 FSRELNVVVVSVNYRRTPEYRYPTQYEDGETALKFLDENKSVLPENVDVSKCFLAGDSAG 183
F R + VVVSVNYR PE+RYPTQYEDG ALKF+D+N VLP + DV KCFLAGDSAG
Sbjct: 412 FCRSFHAVVVSVNYRLAPEHRYPTQYEDGFDALKFIDQNGDVLPRSADVRKCFLAGDSAG 591
Query: 184 ANLAHHVAVRACKAGLQRIRVAGLISMQPFFGGEERTEAEIRLEGSLMISMARTDWMWKV 243
NLAHHVAVR + LQ I++ GLIS+QPFFGGEERT +EIRL+ IS+ +DW WKV
Sbjct: 592 GNLAHHVAVRVARERLQSIKIIGLISLQPFFGGEERTGSEIRLKRVPFISVDISDWHWKV 771
Query: 244 FLPEGSNRDHNAANVSGPNAEDLSRLDYPDTLVFVGGLDGLYDWQKRYYEWLKISGKKAQ 303
FLP GSNRDH+A NVSGPNAED+S LDYP+TLV VGG D L DWQ RYYEWL+ SGK+AQ
Sbjct: 772 FLPTGSNRDHDAVNVSGPNAEDISGLDYPNTLVIVGGFDPLRDWQVRYYEWLRKSGKEAQ 951
Query: 304 LIEYPNMMHGFYAFPNVPEASQLILQIKDFINNRVSN 340
LI+YPNM HGFY FP++ +ASQLI +K+F+N ++SN
Sbjct: 952 LIDYPNMFHGFYIFPDLLDASQLISHVKEFMNKQISN 1062
>TC11011 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial
(21%)
Length = 480
Score = 219 bits (557), Expect = 7e-58
Identities = 100/130 (76%), Positives = 115/130 (87%)
Frame = +1
Query: 211 QPFFGGEERTEAEIRLEGSLMISMARTDWMWKVFLPEGSNRDHNAANVSGPNAEDLSRLD 270
QPFFGGEERTEAEI+LEGS +IS+ RTDWMWKVFLP+G++RDH AANVSGPNAEDLS LD
Sbjct: 1 QPFFGGEERTEAEIKLEGSPLISVVRTDWMWKVFLPDGADRDHGAANVSGPNAEDLSGLD 180
Query: 271 YPDTLVFVGGLDGLYDWQKRYYEWLKISGKKAQLIEYPNMMHGFYAFPNVPEASQLILQI 330
YPDTLVFVG D L DWQKRYY+WL+ SGK+AQLIEYPNM+H FY FP + E+SQLI ++
Sbjct: 181 YPDTLVFVGEFDPLKDWQKRYYDWLRKSGKEAQLIEYPNMIHAFYVFPELSESSQLISEV 360
Query: 331 KDFINNRVSN 340
KDFIN R+SN
Sbjct: 361 KDFINKRISN 390
>TC11788 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial
(15%)
Length = 469
Score = 180 bits (457), Expect = 3e-46
Identities = 87/145 (60%), Positives = 110/145 (75%)
Frame = +2
Query: 6 KPKLPFPLKTRLSISLIMTLTDAACRSNGSVNRRLLNFLDNKTSAKATPINGVSTKDITV 65
KP LP+ KTR+S+S + LTDA+ RSNG+VNRRLLN LD K+ ATP+NGVSTKD+TV
Sbjct: 68 KPFLPW--KTRISLSFLSALTDASRRSNGTVNRRLLNLLDRKSQPNATPVNGVSTKDVTV 241
Query: 66 DAESKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPASLSYDTICRRFS 125
DA +WFRLF PT S T+T SLPV++FFHGGGFT++SPAS +YD +CRRF
Sbjct: 242 DAARNLWFRLFIPT---------SATDTASLPVLVFFHGGGFTYLSPASFAYDAVCRRFC 394
Query: 126 RELNVVVVSVNYRRTPEYRYPTQYE 150
R + +VVSVNYR PE+R+P+QY+
Sbjct: 395 RRVPAIVVSVNYRLCPEHRFPSQYD 469
>TC8413 weakly similar to UP|Q9ZSE0 (Q9ZSE0) PrMC3, partial (49%)
Length = 1092
Score = 157 bits (398), Expect = 2e-39
Identities = 103/301 (34%), Positives = 153/301 (50%), Gaps = 5/301 (1%)
Frame = +2
Query: 32 SNGSVNRRLLNFLDNKTSAKATPINGVSTKDITVDAESKIWFRLFTPTGINASAGGGSNT 91
S+G V R F A + P NG +KD+ +D I R+F P N
Sbjct: 32 SDGLVKR----FDPETVPASSKPSNGYKSKDVVIDPSKPITGRIFLPHFEN--------- 172
Query: 92 ETTSLPVVIFFHGGGFTFMSPASLSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQYED 151
+ LPV+++FHGGGF S L Y FS +V+SV+YR PE+R P YED
Sbjct: 173 QQNLLPVLVYFHGGGFCIGSTTWLGYHHFLGDFSVASQSIVLSVDYRLAPEHRLPAAYED 352
Query: 152 GETALKFLDENKSVLP--ENVDVSKCFLAGDSAGANLAHHVAVRACKAG--LQRIRVAGL 207
AL++L E S P + D+S+ FL+G+SAG N+AHHV V+ + + + + GL
Sbjct: 353 CYVALQWLAEQASSEPWLQGADISRVFLSGESAGGNIAHHVFVKTTQRNNDVLVLPI*GL 532
Query: 208 ISMQPFFGGEERTEAEIRLEGSLMISMARTDWMWKVFLPEGSNRDHNAANVSGPNAEDLS 267
+ + P+FG EERTE E + +A D W++ +PE SNRD+ N + +
Sbjct: 533 MVIHPYFGSEERTEKEEAVADDDKECVAMNDMFWRLSIPEDSNRDYFGCNFEKHDVDASV 712
Query: 268 RLDYPDTLVFVGGLDGLYDWQKRYYEWLKISG-KKAQLIEYPNMMHGFYAFPNVPEASQL 326
+P V+V G D L + Y E+LK G K+ +L+E H F+ F +A++L
Sbjct: 713 WSQFPGIEVYVAGRDFLKERGVMYAEFLKKKGVKEVKLVEAKEEPHIFHIFYPQSDATRL 892
Query: 327 I 327
+
Sbjct: 893 L 895
>TC8656 similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protein, partial
(35%)
Length = 1114
Score = 145 bits (367), Expect = 7e-36
Identities = 91/267 (34%), Positives = 136/267 (50%), Gaps = 8/267 (2%)
Frame = +3
Query: 58 VSTKDITVDAESKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPASLSY 117
V +KD+T++ + W R++ P A LP+++F+HGGGF S AS +
Sbjct: 222 VISKDLTINQSKQTWARIYIPH--KALVSTLRRHLKRRLPLIVFYHGGGFILYSAASTYF 395
Query: 118 DTICRRFSRELNVVVVSVNYRRTPEYRYPTQYEDGETALKFLDENKSV-LPENVDVSKCF 176
C R + VVVSVNY PE+R P YED AL ++ +K L + D S+C+
Sbjct: 396 HDFCNRMANITQSVVVSVNYHLAPEHRLPAAYEDSVEALHWIKTSKDTWLTRHADFSRCY 575
Query: 177 LAGDSAGANLAHHVAVRACKA--GLQRIRVAGLISMQPFFGGEERTEAEIRLEGSLMISM 234
L G+SAG N+A+ +RA ++ + + L+ +QPFFGG +RT +E+RL I
Sbjct: 576 LMGESAGGNIAYFAGLRAATQLDQIKPLNIKALVLIQPFFGGTKRTSSELRLVEDGTIPQ 755
Query: 235 ARTDWMWKVFLPEGSNRDHNAANVS---GPNAEDLSRLDYPDTLVFVGGLDG--LYDWQK 289
TD MW + LP G++RDH +N + GP L ++ V V G +G L D Q+
Sbjct: 756 PITDMMWNLSLPVGADRDHEYSNPTVKGGPKV--LDQIKELGWRVEVFGCEGDPLVDRQR 929
Query: 290 RYYEWLKISGKKAQLIEYPNMMHGFYA 316
+ LK G + HG +A
Sbjct: 930 ELVQLLKGKGVRVMGYFIEGGHHGIFA 1010
>TC15384 weakly similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protein,
partial (21%)
Length = 1193
Score = 144 bits (364), Expect = 2e-35
Identities = 102/313 (32%), Positives = 154/313 (48%), Gaps = 9/313 (2%)
Frame = +1
Query: 33 NGSVNRRLLNFLDNKTSAKATPING---VSTKDITVDAESKIWFRLFTPTGINASAGGGS 89
NGSV R NK +N V +KD+T++ W R++ P +
Sbjct: 166 NGSVTR------PNKPPESPPSLNPTLPVLSKDLTINKSKGTWARIYLPRK--------A 303
Query: 90 NTETTSLPVVIFFHGGGFTFMSPASLSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQY 149
++ LP+V+FFHGGGF F+S AS + C + ++ VV SV YR PE+R P Y
Sbjct: 304 LDHSSKLPLVVFFHGGGFIFLSAASTIFHVFCFNMANDVEAVVASVEYRLAPEHRLPAAY 483
Query: 150 EDGETALKFLDENKSV--LPENVDVSKCFLAGDSAGANLAHHVAVRACKAGLQRIRVAGL 207
+D AL ++ N+ L +V+ S FL G SAG N+A++ +RA Q + GL
Sbjct: 484 DDAVEALHWIKTNQKDDWLINHVEYSNVFLMGGSAGGNIAYNAGLRATAGDKQVSNIQGL 663
Query: 208 ISMQPFFGGEERTEAEIRLEGSLMISMARTDWMWKVFLPEGSNRDH---NAANVSGP-NA 263
I +QPFF G RT +E+R+ +S+ D +W++ LP G NRD+ N A +GP
Sbjct: 664 ILVQPFFSGTLRTGSELRMVNDSHLSLCSNDMLWELSLPVGVNRDNEYCNPAVGNGPVRL 843
Query: 264 EDLSRLDYPDTLVFVGGLDGLYDWQKRYYEWLKISGKKAQLIEYPNMMHGFYAFPNVPEA 323
E++ RL + + G D L D Q ++ G + HG + +A
Sbjct: 844 EEIKRLGWRILVTGCSG-DPLMDRQVGLVRLMQKEGVRVVGHFTEGDYHGVQDSEPL-KA 1017
Query: 324 SQLILQIKDFINN 336
QL + IK FI++
Sbjct: 1018KQLFVVIKRFISS 1056
>TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%)
Length = 1240
Score = 57.8 bits (138), Expect(2) = 5e-17
Identities = 31/104 (29%), Positives = 56/104 (53%)
Frame = +3
Query: 55 INGVSTKDITVDAESKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPAS 114
+ V +KD+ ++ ++ + RL+ P NA+ +LP++I+ HGG F +P +
Sbjct: 132 LTAVQSKDVNINPDTGVAARLYLPP--NAA---------NNLPLLIYIHGGAFCICTPYN 278
Query: 115 LSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQYEDGETALKF 158
+Y + + N VVVSV+YR PE+ P Y+D A+++
Sbjct: 279 NAYHRHLNNVAAKANAVVVSVHYRLAPEHPLPIAYDDTWEAIQW 410
Score = 45.8 bits (107), Expect(2) = 5e-17
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Frame = +2
Query: 175 CFL--AGDSAGANLAHHVAVRACKAGLQRIRVAGLISMQPFFGGEERTEAEIRLEGSLMI 232
CFL AGAN+AH +A+R G +++ G++ + PFFG +ER
Sbjct: 461 CFLRPVPPRAGANIAHSMAMRGNAPG--ALKLQGMVLIHPFFGNDER------------- 595
Query: 233 SMARTDWMWKVFLPEGSNRDHNAANVSGPNAEDLSRLDYPDTLVFVGGLDGLYDWQKRYY 292
D + + P D + P +S L LV D L + + Y+
Sbjct: 596 -----DKLAEFLFPTYGGIDD--PRIHAPRDPKISGLGCGKVLVITAENDFLRERGRSYH 754
Query: 293 EWLKISG--KKAQLIEYPNMMHGFYAF-PNVPEASQLILQIKDFI 334
E LK SG +++E H F+ F P + ++ L+ Q FI
Sbjct: 755 EALKKSGWSGTVEMVETQGEGHCFHLFDPTLEKSVALVNQFSSFI 889
>AU089411
Length = 448
Score = 73.6 bits (179), Expect = 5e-14
Identities = 48/119 (40%), Positives = 68/119 (56%), Gaps = 5/119 (4%)
Frame = +2
Query: 173 SKCFLAGDSAGANLAHHVAVR--ACK-AGLQRIRVAGLISMQPFFGGEERTEAEIRLEGS 229
S +LAGDSAGAN+ ++VA R AC+ A L+ + + GLI +QPFFGGE T + + S
Sbjct: 65 SSVYLAGDSAGANIXYYVATRLAACEGAALRPLNLKGLILIQPFFGGEVXTVSXKCMAQS 244
Query: 230 --LMISMARTDWMWKVFLPEGSNRDHNAANVSGPNAEDLSRLDYPDTLVFVGGLDGLYD 286
+++A +D W++ LP G+ RDH N + L L TLV V +D L D
Sbjct: 245 PGSALNLAASDTYWRLALPSGAGRDHPWCNPLVXXSLKLEELKLFPTLVCVSXMDILXD 421
>TC9128
Length = 678
Score = 68.9 bits (167), Expect = 1e-12
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = +2
Query: 54 PINGVSTKDITVDAESKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPA 113
P V +KD+ + E I R+F P +N LPV+++FHGG F +P
Sbjct: 320 PKTNVESKDVVISKEDGISARIFIPKS--------TNPPPQKLPVLVYFHGGAFCIETPF 475
Query: 114 SLSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQYEDGETALKFL 159
S +Y + NV+ VSV+YRR PE+ P +ED ALK++
Sbjct: 476 SANYHNYVTSVASLANVIGVSVHYRRAPEHPVPIAHEDSWRALKWV 613
>TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Arabidopsis
thaliana;}, partial (23%)
Length = 507
Score = 65.9 bits (159), Expect = 1e-11
Identities = 40/120 (33%), Positives = 60/120 (49%)
Frame = +2
Query: 32 SNGSVNRRLLNFLDNKTSAKATPINGVSTKDITVDAESKIWFRLFTPTGINASAGGGSNT 91
S+GSV+R D K A A N V+ KD D + + RL+ P+ N + ++
Sbjct: 92 SDGSVHRSN----DIKFHAAAVEDNSVTFKDCLFDKKFNLSLRLYKPSSQNTN--NSNHN 253
Query: 92 ETTSLPVVIFFHGGGFTFMSPASLSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQYED 151
+ LP+++F HGGGF F S C R + L +VV+ +YR PE+R P +D
Sbjct: 254 KNMKLPMIMFLHGGGFCFGSRTWPHIHNCCMRLASGLQAMVVAPDYRLAPEHRLPAAVDD 433
>AV423956
Length = 388
Score = 62.4 bits (150), Expect = 1e-10
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = +2
Query: 171 DVSKCFLAGDSAGANLAHHVAVRACKAG--LQRIRVAGLISMQPFFGGEERTEAEIRLEG 228
D ++C L G S GAN+A +VA +A + G L ++V + + PFF G T +EI+L
Sbjct: 86 DPTRCVLIGASCGANIADYVARKAVEGGKLLDPVKVVAQVLLYPFFVGSVLTHSEIKLAN 265
Query: 229 SLMISMARTDWMWKVFLPEGS-NRDHNAAN 257
S A WK+FLPE + DH AAN
Sbjct: 266 SYFYDKAMCMLAWKLFLPEDEFSLDHPAAN 355
>AV775512
Length = 361
Score = 58.9 bits (141), Expect = 1e-09
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = -1
Query: 257 NVSGPNAEDLSRLDYPD-TLVFVGGLDGLYDWQKRYYEWLK-ISGKKAQLIEYPNMMHGF 314
NV+GP+AED+S LDYP+ TL VGG D +K I+GK+ + P+ HGF
Sbjct: 355 NVNGPDAEDISGLDYPNTTLSIVGGFDPFRGLASEVL*VVKEITGKRLS*LTIPHSFHGF 176
Query: 315 YAFPNVPEASQLILQIKDFINNRVSNF 341
Y FP++ +ASQL N+ +NF
Sbjct: 175 YIFPDLLDASQLTFSCPG--NHEPANF 101
>TC18964
Length = 397
Score = 53.9 bits (128), Expect = 4e-08
Identities = 32/96 (33%), Positives = 44/96 (45%)
Frame = +3
Query: 54 PINGVSTKDITVDAESKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPA 113
P VS+KDI + I R+ P SN + +P++I++HGG F S
Sbjct: 132 PETEVSSKDIVISQTPLISARIHLPKQ--------SNPQNPKVPILIYYHGGAFCLESAF 287
Query: 114 SLSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQY 149
S + + NVVVVSV YR PE+ P Y
Sbjct: 288 SFLHQRYLNIVASRSNVVVVSVEYRLAPEHPLPAAY 395
>TC12874 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (42%)
Length = 512
Score = 50.1 bits (118), Expect = 5e-07
Identities = 25/64 (39%), Positives = 32/64 (49%)
Frame = +3
Query: 96 LPVVIFFHGGGFTFMSPASLSYDTICRRFSRELNVVVVSVNYRRTPEYRYPTQYEDGETA 155
LP+++ FHGGGF P Y I RF R + VS RR PE R P +D
Sbjct: 312 LPILLHFHGGGFCISEPDCFMYYQIYTRFVRSTRSICVSPFLRRAPENRLPAAVDDAFAT 491
Query: 156 LKFL 159
L++L
Sbjct: 492 LQWL 503
>TC18672 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (29%)
Length = 424
Score = 49.7 bits (117), Expect = 7e-07
Identities = 31/98 (31%), Positives = 44/98 (44%)
Frame = +1
Query: 245 LPEGSNRDHNAANVSGPNAEDLSRLDYPDTLVFVGGLDGLYDWQKRYYEWLKISGKKAQL 304
LP GSN+DH G A L L P L+ + +D ++D + YYE +K + K +L
Sbjct: 10 LPLGSNKDHPITCPMGAAAPPLEGLKLPPFLLCMAEMDLVWDTEMEYYEAMKKANKDVEL 189
Query: 305 IEYPNMMHGFYAFPNVPEASQLILQIKDFINNRVSNFI 342
M H FY +A + D + RV FI
Sbjct: 190 YVSKGMTHSFYLNKIAVDADPITSAQTDALIARVKEFI 303
>TC8464
Length = 519
Score = 45.8 bits (107), Expect = 1e-05
Identities = 28/76 (36%), Positives = 40/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 260 GPNAEDLSRLDYPDTLVFVGGLDGLYDWQKRYYEWLKISGKKAQLIEYPNMMHGFYAFPN 319
GP++ +L L+ LV VGG + L D Y LK GK + IE+ HGF+ +
Sbjct: 9 GPDSPNLGELNLEPILVIVGGNELLKDRAADYATRLKELGKDIKYIEFEGSEHGFFTHDS 188
Query: 320 VPEASQLILQI-KDFI 334
E S+ ++QI K FI
Sbjct: 189 YSEVSEEVIQILKQFI 236
>TC8491
Length = 643
Score = 40.8 bits (94), Expect = 3e-04
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Frame = +1
Query: 198 GLQRIRVAGLISMQPFFGGEERTEAEIRLEGSLMISMARTDWMWKVFLPEGSNRDHNAAN 257
G +R+ GL+ + P+F G ER I EG + + +W+ P S D N
Sbjct: 16 GFDGVRIEGLVYVHPYFWGGER----IGKEGDRPEYVQKVHDLWRFSYPTTSGSDDPLLN 183
Query: 258 -VSGPNAEDLSRLDYPDTLVFVGGLDGLYDWQKRYYEWLKISG--KKAQLIEYPNMMHGF 314
PN L +L LV V G D L D Y E L+ G + +++E + H F
Sbjct: 184 PAKDPN---LGKLACGRVLVCVAGNDLLRDRGWYYQELLEKIGWSGEVEVLEAKDEEHVF 354
Query: 315 YAF-PNVPEASQLILQIKDFI 334
+ F P A L+ + FI
Sbjct: 355 HMFKPTCENAMVLLNPVVSFI 417
>TC10961 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (35%)
Length = 440
Score = 35.8 bits (81), Expect = 0.011
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 55 INGVSTKDITVDAE-SKIWFRLFTPTGINASAGGGSNTETTSLPVVIFFHGGGFTFMSPA 113
I GV+ +D+T + S RL+ P ++ + LP+++ FHGGGF P
Sbjct: 208 IEGVAIRDVTTTHDGSGNRIRLYMPEK--------TSDDKHKLPILLHFHGGGFCISEPD 363
Query: 114 SLSYDTICRRFSRELNVVVVS 134
Y I R R + VS
Sbjct: 364 YYMYYQIYTRLVRSTRSICVS 426
>TC12221
Length = 486
Score = 32.7 bits (73), Expect = 0.090
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +2
Query: 240 MWKVFLPEGSNR-DHNAANVSGPNAEDLSRLDYPDTLVFVGGLDGLYDWQKRYYEWLKIS 298
+W + P D+ N GP A L+ L +V V G D D YYE + S
Sbjct: 71 IWNLVYPSAPGGVDNPKLNPVGPGAPSLATLGCSRIIVCVAGKDRFKDRAVWYYEAVNKS 250
Query: 299 GKKA--QLIEYPNMMHGFYAF-PNVPEASQLILQIKDFIN 335
G + +L E + H ++ F P A +L ++ F++
Sbjct: 251 GWQG*LELFEEEDEDHIYHLFKPESESAKKLFKRLASFLH 370
>TC14768 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (21%)
Length = 1036
Score = 29.3 bits (64), Expect = 1.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 271 YPDTLVFVGGLDGLYDWQKRYYEWLKISGKKAQ 303
YP T + GG DG DW Y ++ + G AQ
Sbjct: 168 YPSTTYYYGGYDGQNDWNV-YSRYMNLDGGMAQ 73
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,432,287
Number of Sequences: 28460
Number of extensions: 66717
Number of successful extensions: 366
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of query: 342
length of database: 4,897,600
effective HSP length: 91
effective length of query: 251
effective length of database: 2,307,740
effective search space: 579242740
effective search space used: 579242740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC139853.10