TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.9 + phase: 0 
         (500 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17549 similar to UP|DDPX_ECOLI (P77790) D-alanyl-D-alanine dip...   110  5e-25
TC12400 similar to GB|AAP68251.1|31711790|BT008812 At2g36720 {Ar...    41  4e-04
TC12411 weakly similar to GB|CAC28825.2|16944700|NCB18D24 relate...    30  0.91
AV415164                                                               29  1.6
AV422020                                                               28  3.5
TC8555 similar to GB|AAM62930.1|21553837|AY085712 phytochelatin ...    28  3.5
AV412627                                                               28  4.5
AV406674                                                               28  4.5
CB828743                                                               27  5.9
TC18017 homologue to UP|Q8L5G3 (Q8L5G3) Proline rich protein 3 (...    27  5.9
TC15091 similar to UP|Q897L9 (Q897L9) Sensor histidine kinase, p...    27  7.7

>TC17549 similar to UP|DDPX_ECOLI (P77790) D-alanyl-D-alanine dipeptidase
           (D-Ala-D-Ala dipeptidase) , partial (8%)
          Length = 663

 Score =  110 bits (275), Expect = 5e-25
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
 Frame = +3

Query: 1   MVKGSGHVSDREPAFDNPSKIEPKRPHQWLIDATEGDFLPNKKQAIEDANERSSSGFSNV 60
           M + +G +++    ++N S+IEPKR HQW +D  E +   NKKQA+E  ++R  SG S+V
Sbjct: 240 MPRDAGCLAEENVGYENSSRIEPKRSHQWFMDTGESEVFSNKKQAVEAVSDRPVSGVSHV 419

Query: 61  NFTPWENNHNFHSDPSHQNQLIDRLFGSETRPVNFTEKNTYVSGDGS-DVRSKMIANHYG 119
           N + W+ N   H       Q  DRLFGS+ R VN  +KN    G G+ ++  K   N YG
Sbjct: 420 NVSQWDTNSGLH---*VTGQFSDRLFGSDVRNVNLVDKNMPSIGSGNLNMGRKDFGNQYG 590

Query: 120 DGASFGLSISHSTEDSEPCMNFGGIK 145
           +  S GLSI  +  D   C+NFGGI+
Sbjct: 591 NDPSMGLSI--TIPDPSSCLNFGGIR 662


>TC12400 similar to GB|AAP68251.1|31711790|BT008812 At2g36720 {Arabidopsis
           thaliana;}, partial (4%)
          Length = 490

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
 Frame = +3

Query: 234 PDERGVISVGRAATDYEQLYNQSSVHVSTTAHEKELEASNSDVVAST----PLVTTKKPE 289
           PD+   +SV      Y +   + SV  S    E ELE   +  V        LV T    
Sbjct: 144 PDQARKVSVVNGHIVYTRSAFKVSVVESVERVESELEQGGASGVGDGGIDGALVGTG--- 314

Query: 290 SVSKNKQDIKSTRKESPNTFPTNVRSLISTGMLDGVPVKYVSVAREE--LRGIIKGTTYL 347
                K ++K ++K   +  PT V+ L  TG+LDGV V Y+    +   LRG+I+    L
Sbjct: 315 ----GKMELKMSKKIVVSRKPTTVKELFDTGLLDGVSVVYMGGINKTSGLRGVIRDGGIL 482

Query: 348 C 348
           C
Sbjct: 483 C 485


>TC12411 weakly similar to GB|CAC28825.2|16944700|NCB18D24 related to
           a-agglutinin core protein AGA1 {Neurospora crassa;} ,
           partial (5%)
          Length = 570

 Score = 30.0 bits (66), Expect = 0.91
 Identities = 20/69 (28%), Positives = 31/69 (43%)
 Frame = +3

Query: 50  NERSSSGFSNVNFTPWENNHNFHSDPSHQNQLIDRLFGSETRPVNFTEKNTYVSGDGSDV 109
           N   S GF+NV+ + + + H+F + P   +     L+ S T P++ T      S  G  V
Sbjct: 9   NNEPSFGFANVSASQYSSQHSF-ALPHASSTSATMLYNSSTTPLSTT------SSFGGFV 167

Query: 110 RSKMIANHY 118
                 NHY
Sbjct: 168 HQDHAGNHY 194


>AV415164 
          Length = 322

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 23/78 (29%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
 Frame = +2

Query: 207 GKVDNTVLSIAESYNKDETNIISFGGFPDERGV--ISVGRAATDYEQLYNQSSVHVSTTA 264
           G +   + + A  +N D T I     FP++  +  +     A  YE+LY ++ V +   A
Sbjct: 59  GYIGMEIAAAAVGWNLDTTII-----FPEDHLLQRLFTPSLARRYEELYQKNGVKILKGA 223

Query: 265 HEKELEASNSDVVASTPL 282
             K LEA +   VAS  L
Sbjct: 224 SIKNLEAGSDGHVASVKL 277


>AV422020 
          Length = 423

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 446 YCLGFVWYVINPLFVT 461
           +CLGF W  ++PLF++
Sbjct: 334 FCLGFTWLFLSPLFIS 287


>TC8555 similar to GB|AAM62930.1|21553837|AY085712 phytochelatin
            synthetase-like protein {Arabidopsis thaliana;} , partial
            (83%)
          Length = 1776

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = -1

Query: 418  AFRIWKGKEIPNLFKHKQTNGCIGNVEFYCL 448
            A RIW  KE+ N+ K K+ + C+    + CL
Sbjct: 1527 ALRIWCRKEVYNIPKEKKVSLCLNIDNYLCL 1435


>AV412627 
          Length = 326

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 16/52 (30%), Positives = 23/52 (43%)
 Frame = +3

Query: 62  FTPWENNHNFHSDPSHQNQLIDRLFGSETRPVNFTEKNTYVSGDGSDVRSKM 113
           F P EN H+FH      +   +R F S  R   F  +    + D S  R+K+
Sbjct: 123 FNPPENLHSFHFIDPPSSSPKNRAFSSVFRSETFDHRRAVSAKDSSTRRNKI 278


>AV406674 
          Length = 397

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +2

Query: 93  VNFTEKNTYVSGDGSDVRSKMIANHYGDG 121
           +N   +N ++S +G+D  S  +AN  GDG
Sbjct: 20  LNSENRNNFISFNGNDNSSSFVANPAGDG 106


>CB828743 
          Length = 253

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = +1

Query: 419 FRIWKGKEIPNLFKHKQTNGCIGNVEFYCLGF 450
           F + +G+E P++    +  GC G V F+ LGF
Sbjct: 157 FMLLRGREGPSMDSGVENLGCCGVVLFWVLGF 252


>TC18017 homologue to UP|Q8L5G3 (Q8L5G3) Proline rich protein 3 (Fragment),
           partial (23%)
          Length = 560

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = +2

Query: 166 DRQSTGDLHHVYHGEVETRSGSIGLAYGSGDARIRPFGTPYGK 208
           D  S  ++HH   G V   SGS+G+       RI+    P+GK
Sbjct: 38  DVNSAANVHHTLQGAVIPSSGSVGM-------RIQYSKNPFGK 145


>TC15091 similar to UP|Q897L9 (Q897L9) Sensor histidine kinase, partial (6%)
          Length = 637

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 16/58 (27%), Positives = 25/58 (42%)
 Frame = -1

Query: 258 VHVSTTAHEKELEASNSDVVASTPLVTTKKPESVSKNKQDIKSTRKESPNTFPTNVRS 315
           VH+S TAHE         V   T L TT     + K ++  + TR+    T  +  ++
Sbjct: 529 VHLSDTAHEFFFPGKEKKVFKKTSLRTTY--SEIGKKRKHTRKTRRIQRETISSEAKT 362


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,718,295
Number of Sequences: 28460
Number of extensions: 121558
Number of successful extensions: 487
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of query: 500
length of database: 4,897,600
effective HSP length: 94
effective length of query: 406
effective length of database: 2,222,360
effective search space: 902278160
effective search space used: 902278160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)