TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139841.7 - phase: 0 
         (46 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036178                                                               28  0.52
TC17386 similar to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt,...    23  9.7
AV769026                                                               23  9.7
AV765630                                                               23  9.7

>BP036178 
          Length = 561

 Score = 27.7 bits (60), Expect = 0.52
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 3   RAKKGRPPITRIRTEMDDVETERR------CGVCRMSDHSRKDCT 41
           R  K R P  R + ++  VE  +R      CG C M  HS+K CT
Sbjct: 449 RPPKTRRPPGRPKKKVLRVENFKRPKRIVQCGRCHMLGHSQKKCT 315


>TC17386 similar to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt, partial
           (19%)
          Length = 507

 Score = 23.5 bits (49), Expect = 9.7
 Identities = 8/27 (29%), Positives = 12/27 (43%)
 Frame = +2

Query: 20  DVETERRCGVCRMSDHSRKDCTNIRHQ 46
           D+   + C  C    H  +DC  + HQ
Sbjct: 188 DISGVKGCAYCGGLGHRIRDCPKLEHQ 268


>AV769026 
          Length = 360

 Score = 23.5 bits (49), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 22  ETERRCGVCRMSDHSRKDCTNIRHQ 46
           +  RRC  C  S  S+  C N+R Q
Sbjct: 288 QRHRRCCPCPFSHPSKDFCQNLRTQ 214


>AV765630 
          Length = 304

 Score = 23.5 bits (49), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 27  CGVCRMSDHSRKDCTN 42
           C VCR SD S + CT+
Sbjct: 221 CDVCRFSDCSCQTCTD 174


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 843,584
Number of Sequences: 28460
Number of extensions: 6959
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of query: 46
length of database: 4,897,600
effective HSP length: 22
effective length of query: 24
effective length of database: 4,271,480
effective search space: 102515520
effective search space used: 102515520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)