BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.2 - phase: 0 /pseudo
(285 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV778595 30 0.36
TC15940 weakly similar to GB|AAH05682.1|13542999|BC005682 carcin... 28 2.3
TC17654 similar to UP|BAC36925 (BAC36925) 8 days embryo whole bo... 27 3.0
TC18307 similar to UP|Q7XYK9 (Q7XYK9) Plastid protein SufE (Frag... 27 4.0
AV410210 27 4.0
TC10400 27 5.2
TC11985 similar to GB|AAF40452.1|7211981|F13M7 ESTs gb|N65605, g... 26 6.8
BP057842 26 6.8
TC14368 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycos... 26 6.8
AV423422 26 8.9
BP053682 26 8.9
>AV778595
Length = 594
Score = 30.4 bits (67), Expect = 0.36
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Frame = +2
Query: 3 MAETTTSSSSSSSLDDSNVTRNKLWK------------VAFAVSGIMLTLVTYGVLQEKI 50
M E ++SSSSSSS S LWK +A AV+ ++ T T L + I
Sbjct: 83 MEEASSSSSSSSSGGSSEQQELLLWKSDPQPESIVSVTLARAVTSLLTTRPT--KLHDSI 256
Query: 51 MRV-PYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARDKALLPV 94
R+ P L F + T A +A L + D+ LLP+
Sbjct: 257 SRLSPSPTPPSTASLEHSLRFFHTFVTDAAAANNLTSLDQLLLPI 391
>TC15940 weakly similar to GB|AAH05682.1|13542999|BC005682 carcinoma related
gene {Mus musculus;} , partial (39%)
Length = 462
Score = 27.7 bits (60), Expect = 2.3
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 154 YLLAFSVT-LGCSIFILYPAGTDISPYGRGRENTIWGILLMIGYLGYHYKTQSLFAFRLF 212
YL A VT +GCS+ I+ P ++P ++ W L+ +L Y K F F +F
Sbjct: 213 YLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFW--RLVTNFL-YFRKMDLDFLFHMF 383
Query: 213 SLAYFVSFLSSLLESHSF 230
LA + LLE +SF
Sbjct: 384 FLARY----CKLLEENSF 425
>TC17654 similar to UP|BAC36925 (BAC36925) 8 days embryo whole body cDNA,
RIKEN full-length enriched library, clone:5730499P16
product:PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUNIT,
BETA ISOFORM (PI3-KINASE P110 SUBUNIT BETA)
(PTDINS-3-KINASE P110) (PI3K) (PI3 , partial (8%)
Length = 549
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 8 TSSSSSSSLDDSNVTRNKLWKVAFAVSGIMLTLVTYGV 45
+SSSS+SS+ +KLW + + G++L L +G+
Sbjct: 322 SSSSSTSSMCQIRAHLDKLWLLLLLLLGLLLALRLWGL 209
>TC18307 similar to UP|Q7XYK9 (Q7XYK9) Plastid protein SufE (Fragment),
partial (9%)
Length = 773
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 7 TTSSSSSSSLDDSNVTRNKLWKVAFAVSGIMLTLVTYGVLQEKIMRV 53
+T S+ S+ S R +L KVAF SG +LTL+ +L K++ +
Sbjct: 326 STGRISNPSIPSSRARRTRL-KVAFPRSGSVLTLIRRRMLCMKLILI 463
>AV410210
Length = 317
Score = 26.9 bits (58), Expect = 4.0
Identities = 16/35 (45%), Positives = 21/35 (59%)
Frame = +3
Query: 1 MVMAETTTSSSSSSSLDDSNVTRNKLWKVAFAVSG 35
M + + +SSSSSSS D SN T K W V ++G
Sbjct: 39 MAICSSPSSSSSSSSFDSSNNT--KAWIVHGILAG 137
>TC10400
Length = 1004
Score = 26.6 bits (57), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 254 ITIMIVSLTYYCFQPLQQLVNFLFPTQF 281
+ I+I ++ YYCF + ++N FP F
Sbjct: 586 LIIII*NVNYYCFLAISPIINTKFPCFF 503
>TC11985 similar to GB|AAF40452.1|7211981|F13M7 ESTs gb|N65605, gb|N38087,
gb|T20485, gb|T13726, gb|N38339, gb|F15440 and gb|N97201
come from this gene. {Arabidopsis thaliana;}, partial
(88%)
Length = 1334
Score = 26.2 bits (56), Expect = 6.8
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -1
Query: 97 IYKYCLVSVSNILTTTCQYEALKYV------SFPVQTLAKCAKMIPVMIWSALI 144
++ CL+ S + T CQ+E+ ++ S P+ + + + ++PV +W +++
Sbjct: 617 VFSLCLLHSSLLPATLCQFESSPFLFLSPFSSLPLLSSCEPSPLVPV-VWPSIL 459
>BP057842
Length = 516
Score = 26.2 bits (56), Expect = 6.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 90 ALLPVAPIYKYCLVSVSNILTTTCQYEA 117
A LP P CL+ ++++ + C Y A
Sbjct: 319 ANLPTMPFASQCLIQIASVQDSVCHYAA 402
>TC14368 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycosylase XET2
, partial (46%)
Length = 565
Score = 26.2 bits (56), Expect = 6.8
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +3
Query: 71 CNRITTSAVSAAALVARDKALLPVAPIYKYCL 102
C R T S ++A KA P API++ CL
Sbjct: 321 CRRTTWSTITALTRRDFHKASQPNAPIHRICL 416
>AV423422
Length = 375
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/49 (36%), Positives = 27/49 (54%), Gaps = 10/49 (20%)
Frame = -2
Query: 69 VFCNRITTSAVSAAALVARDK----------ALLPVAPIYKYCLVSVSN 107
+FC T+SA+++ A +ARD ALLP AP CL++ S+
Sbjct: 323 LFCIDKTSSALASGAGIARDSLTLLSGSCLWALLPAAP----CLLASSS 189
>BP053682
Length = 483
Score = 25.8 bits (55), Expect = 8.9
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 5/70 (7%)
Frame = +1
Query: 101 CLVSVSNILTTTCQYEA-----LKYVSFPVQTLAKCAKMIPVMIWSALIMQKKYQGTDYL 155
C ++V+N + C + L +FP TL ++MIP I S+ MQ++ +
Sbjct: 259 CSLAVANA*VSVCSDKGAPESILLLATFPAITLGSVSRMIPPSIISS--MQRRIRSKFSS 432
Query: 156 LAFSVTLGCS 165
+F TL S
Sbjct: 433 ASFWSTLALS 462
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.334 0.143 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,323,178
Number of Sequences: 28460
Number of extensions: 76989
Number of successful extensions: 809
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of query: 285
length of database: 4,897,600
effective HSP length: 89
effective length of query: 196
effective length of database: 2,364,660
effective search space: 463473360
effective search space used: 463473360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC139841.2