BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.15 - phase: 0
(147 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 268 2e-73
TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 260 6e-71
TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ... 254 6e-69
TC14311 homologue to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein... 228 4e-61
TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%) 214 6e-57
AI967840 171 6e-44
AV415208 109 2e-25
AU251825 107 6e-25
BP037334 88 5e-19
TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soyb... 37 0.001
TC16355 similar to UP|Q9M4U6 (Q9M4U6) Histone H1 variant, partia... 36 0.002
BI418928 33 0.015
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 33 0.026
TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, ... 31 0.076
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 31 0.099
BP081986 31 0.099
TC16918 weakly similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g... 30 0.13
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 30 0.22
AV408295 29 0.38
TC14566 similar to UP|SRP_PHAVU (Q41112) Stress-related protein ... 28 0.84
>TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (96%)
Length = 764
Score = 268 bits (686), Expect = 2e-73
Identities = 142/149 (95%), Positives = 145/149 (97%), Gaps = 2/149 (1%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAP-AEKKPKAGKKLPKEGGSAAGDKKK-RSKKNVE 58
MAPK +KKPAEKKPAEEKKSTVAEKAP AEKKPKAGKKLPKEG +AAGDKKK RSKK+VE
Sbjct: 75 MAPKADKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVE 254
Query: 59 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 118
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 255 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 434
Query: 119 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 435 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
>TC14309 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (93%)
Length = 682
Score = 260 bits (665), Expect = 6e-71
Identities = 143/152 (94%), Positives = 144/152 (94%), Gaps = 5/152 (3%)
Frame = +1
Query: 1 MAPKG--EKKPA-EKKPAEEKKSTVAEKAP-AEKKPKAGKKLPKEGGSAAGDKKK-RSKK 55
MAPK EKKPA EKKPAEEKKST AEKAP AEKKPKAGKKLPKEG SAAGDKKK RSKK
Sbjct: 58 MAPKAAAEKKPAAEKKPAEEKKSTAAEKAPPAEKKPKAGKKLPKEGASAAGDKKKKRSKK 237
Query: 56 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 115
NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 238 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 417
Query: 116 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
EIQTAVRLVLPGELAKHAVSEGTK+VTKFTSS
Sbjct: 418 EIQTAVRLVLPGELAKHAVSEGTKSVTKFTSS 513
>TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (90%)
Length = 701
Score = 254 bits (648), Expect = 6e-69
Identities = 138/149 (92%), Positives = 141/149 (94%), Gaps = 2/149 (1%)
Frame = +2
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAP-AEKKPKAGKKLPKEGGSAAGDKKK-RSKKNVE 58
MAPK A+KKPAEEKKSTVAEKAP AEKKPKAGKKLPKEG +AAGDKKK RSKK+VE
Sbjct: 80 MAPK-----ADKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVE 244
Query: 59 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 118
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 245 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 424
Query: 119 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 425 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 511
>TC14311 homologue to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(97%)
Length = 626
Score = 228 bits (580), Expect = 4e-61
Identities = 118/144 (81%), Positives = 129/144 (88%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIY 63
+ +KKPAEKKPA ++ A AEKKP+A KK+PKEG +A KKKRSKKNVETYKIY
Sbjct: 49 RADKKPAEKKPAAAEEKAAA----AEKKPRAEKKIPKEGAAAGDKKKKRSKKNVETYKIY 216
Query: 64 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 123
IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYN+KPTITSREIQTAVRL
Sbjct: 217 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNQKPTITSREIQTAVRL 396
Query: 124 VLPGELAKHAVSEGTKAVTKFTSS 147
VLPGELA+HAVSEGT+AVT+FTSS
Sbjct: 397 VLPGELAQHAVSEGTQAVTQFTSS 468
>TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)
Length = 502
Score = 214 bits (544), Expect = 6e-57
Identities = 121/144 (84%), Positives = 125/144 (86%), Gaps = 2/144 (1%)
Frame = +3
Query: 1 MAP-KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVET 59
MAP K EKKPAEKKPA AEKAPAEKKPKA KK+ KEGGS KKK+SKK+VET
Sbjct: 57 MAPAKAEKKPAEKKPA-------AEKAPAEKKPKAEKKIAKEGGSEK--KKKKSKKSVET 209
Query: 60 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 119
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 210 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 389
Query: 120 AVRLVLPGELAKHAVSEGTK-AVT 142
AVRL LPGELAKHAVSE + AVT
Sbjct: 390 AVRLGLPGELAKHAVSEXNQXAVT 461
>AI967840
Length = 393
Score = 171 bits (432), Expect = 6e-44
Identities = 93/120 (77%), Positives = 99/120 (82%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIY 63
KGEKKPAEKKPA AEKAP K A KK+P + ++ KKK+ K+VETYKIY
Sbjct: 58 KGEKKPAEKKPA-------AEKAPPAK---AEKKVPTKDAASVDKKKKKKSKSVETYKIY 207
Query: 64 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 123
IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL
Sbjct: 208 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 387
>AV415208
Length = 242
Score = 109 bits (273), Expect = 2e-25
Identities = 59/80 (73%), Positives = 65/80 (80%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETY 60
MAPK EKKPAEKKPA AEKAPAEKKPKA KK+ K+ + + KKKR+KK+VETY
Sbjct: 24 MAPKAEKKPAEKKPA------AAEKAPAEKKPKAEKKISKDA-TGSEKKKKRTKKSVETY 182
Query: 61 KIYIFKVLKQVHPDIGISSK 80
KIYIFKVLKQVHPDIGISSK
Sbjct: 183KIYIFKVLKQVHPDIGISSK 242
>AU251825
Length = 237
Score = 107 bits (268), Expect = 6e-25
Identities = 57/77 (74%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Frame = +3
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLP-KEGGSAAGDKKKRSKKNVETYKI 62
KG+KKPAEKKPA ++ A AEKKP+A KK+P KEGG+A KKKRSKKNVETYKI
Sbjct: 18 KGDKKPAEKKPAAAEEKAAA----AEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKI 185
Query: 63 YIFKVLKQVHPDIGISS 79
YIFKVLKQVHPDIGISS
Sbjct: 186YIFKVLKQVHPDIGISS 236
>BP037334
Length = 318
Score = 88.2 bits (217), Expect = 5e-19
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -2
Query: 91 DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
DIFEKLAQESSRLARY++KPTITSREI VRLVLPGELA+ VSEG +AVT+FTSS
Sbjct: 317 DIFEKLAQESSRLARYHQKPTITSREIPPPVRLVLPGELAQPPVSEGPQAVTQFTSS 147
>TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soybean
(fragment) {Glycine max;}, partial (84%)
Length = 1268
Score = 37.4 bits (85), Expect = 0.001
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 5 GEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSK 54
GEK A +P ++K S + A EKK K+ PK G GD+K + K
Sbjct: 542 GEKPKAAAEPEKKKDSEKPKAAEPEKKKDGDKEKPKSDGPKKGDEKPKDK 691
>TC16355 similar to UP|Q9M4U6 (Q9M4U6) Histone H1 variant, partial (50%)
Length = 584
Score = 36.2 bits (82), Expect = 0.002
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = +1
Query: 7 KKPAEKKPAEEKKSTVAEKAPAEKKPKAGK 36
K P E KPA+EKK KAP EKKPK GK
Sbjct: 121 KAPKETKPAKEKK----PKAPKEKKPKQGK 198
Score = 35.0 bits (79), Expect = 0.005
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 9 PAEKKPAEEKKSTVAEKAPAEKKPKAGK-KLPKEGGSAA 46
PA +KP EE K+ K EKKPKA K K PK+G A+
Sbjct: 91 PAVEKPVEEVKAPKETKPAKEKKPKAPKEKKPKQGKIAS 207
>BI418928
Length = 496
Score = 33.5 bits (75), Expect = 0.015
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 3 PKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKE 41
P EKKP EK ++KK + P EKK + K PK+
Sbjct: 282 PPPEKKPEEKPKTDDKKPEEEKTKPDEKKAEEKTKTPKQ 398
Score = 32.3 bits (72), Expect = 0.034
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +3
Query: 5 GEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKI 62
G+K P EKKP E+ K+ +K P E+K K +K A +K K K++ KI
Sbjct: 273 GDKPPPEKKPEEKPKTD--DKKPEEEKTKPDEK-------KAEEKTKTPKQSTVVMKI 419
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 32.7 bits (73), Expect = 0.026
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSA---AGDKKKRSKKN 56
K EKK +KK E + +++ AEK+ K K+ E GS +KKK+ KK+
Sbjct: 82 KKEKKKKKKKDQENGEVASSDEEKAEKEKKKKHKVKVEDGSPDLDQSEKKKKKKKD 249
>TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, partial
(57%)
Length = 1280
Score = 31.2 bits (69), Expect = 0.076
Identities = 17/40 (42%), Positives = 22/40 (54%)
Frame = +1
Query: 6 EKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSA 45
+K+ E K +EEK AEKKPKA + KEG +A
Sbjct: 352 KKREEELKASEEKAKAEKRLKEAEKKPKAEENDKKEGTAA 471
Score = 28.9 bits (63), Expect = 0.38
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +1
Query: 12 KKPAEEKKSTVAEKAPAEKKPKAGKKLP------KEGGSAAGDKKKRSKKNVETY 60
KK EE+ EKA AEK+ K +K P K+ G+AA K + ++E Y
Sbjct: 349 KKKREEELKASEEKAKAEKRLKEAEKKPKAEENDKKEGTAAIVPNKGNGMDLEKY 513
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 30.8 bits (68), Expect = 0.099
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 6/45 (13%)
Frame = +2
Query: 5 GEKKPAEKKPAEEKKSTVAEKAPAEK------KPKAGKKLPKEGG 43
G+K P KPA +K +T +KAPA+ K A + P+ GG
Sbjct: 881 GKKVPPPPKPAPKKAATPVKKAPAKSGKAKTVKSPAKRTAPQRGG 1015
Score = 29.6 bits (65), Expect = 0.22
Identities = 22/57 (38%), Positives = 24/57 (41%), Gaps = 5/57 (8%)
Frame = +2
Query: 2 APKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKA-----GKKLPKEGGSAAGDKKKRS 53
A K + KPA K A K+T K A KPKA K K AA K K S
Sbjct: 563 ATKAKAKPAPKSKAAATKTTAKAKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKAKAS 733
Score = 26.9 bits (58), Expect = 1.4
Identities = 32/144 (22%), Positives = 55/144 (37%), Gaps = 1/144 (0%)
Frame = +2
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETY 60
+AP ++P ++PA VAE PA+ P K+ SAA KK S + E
Sbjct: 89 IAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPTKEAKPRKRSAA---KKASHPSYEEM 259
Query: 61 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYN-KKPTITSREIQT 119
LK+ S + + F+ + ++L +L ++ KK + ++
Sbjct: 260 VKDAIVTLKEK------SGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKV 421
Query: 120 AVRLVLPGELAKHAVSEGTKAVTK 143
LP + A + A K
Sbjct: 422 KNSFKLPSAKSSAAAAASKPAAAK 493
Score = 24.6 bits (52), Expect = 7.1
Identities = 16/51 (31%), Positives = 19/51 (36%)
Frame = +2
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSK 54
K A KPA KK A ++ KPKA K A +SK
Sbjct: 449 KSSAAAAASKPAAAKKKPQPAAAKSKPKPKAKAKPAAAATKAKAKPAPKSK 601
>BP081986
Length = 433
Score = 30.8 bits (68), Expect = 0.099
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 3 PKGEKKPAEKKPAEEKKSTVAEKAPAEKKPK 33
PK +K P E + + KKST + A AE KP+
Sbjct: 64 PKPKKPPPETQACQIKKSTTQKSASAETKPR 156
>TC16918 weakly similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800),
partial (24%)
Length = 498
Score = 30.4 bits (67), Expect = 0.13
Identities = 22/41 (53%), Positives = 23/41 (55%), Gaps = 9/41 (21%)
Frame = +2
Query: 2 APKGEKKPAEKKP---------AEEKKSTVAEKAPAEKKPK 33
A GEK P EKKP +EEKKS EK P EKKPK
Sbjct: 353 AGAGEKSP-EKKPEEKKSDEKKSEEKKSD--EKKPEEKKPK 466
Score = 24.3 bits (51), Expect = 9.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 6 EKKPAEKKPAEEKKSTVAEK 25
EKKP EKKP K+STV K
Sbjct: 437 EKKPEEKKP---KESTVVMK 487
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 29.6 bits (65), Expect = 0.22
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 4/55 (7%)
Frame = +2
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKA-PAEKKP--KAGKKLPKE-GGSAAGDKKK 51
+ P+ E +P +K+ +E++ AE+ P EKK KA ++ KE GG D K+
Sbjct: 47 IVPQPEPEPEKKEEGKEEEKPAAEEGKPEEKKEEEKAAEEAKKEEGGEEKNDNKE 211
>AV408295
Length = 426
Score = 28.9 bits (63), Expect = 0.38
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +3
Query: 6 EKKPAEKKPAEEKKS---TVAEKAPAEKKPKA 34
+K EKKPAEE+K EK PAE++ KA
Sbjct: 207 KKTEEEKKPAEEEKKEEVVEEEKKPAEEEKKA 302
Score = 28.5 bits (62), Expect = 0.49
Identities = 21/47 (44%), Positives = 27/47 (56%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 EKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSA--AGDKK 50
EKKPAE EEKK V E+ EKKP +K + G A +G++K
Sbjct: 222 EKKPAE----EEKKEEVVEE---EKKPAEEEKKAEAEGEATTSGEEK 341
>TC14566 similar to UP|SRP_PHAVU (Q41112) Stress-related protein (PvSRP),
partial (97%)
Length = 1198
Score = 27.7 bits (60), Expect = 0.84
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = -2
Query: 2 APKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAG 47
AP+ E KP P+ K +P+ K+P A ++ P EG +AAG
Sbjct: 741 APR-EDKPKLCNPSGRWKQPPRCTSPSSKQP*ATQRQPPEGKAAAG 607
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.125 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,610,504
Number of Sequences: 28460
Number of extensions: 15262
Number of successful extensions: 208
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of query: 147
length of database: 4,897,600
effective HSP length: 82
effective length of query: 65
effective length of database: 2,563,880
effective search space: 166652200
effective search space used: 166652200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC139841.15