BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.14 + phase: 0 /pseudo
(99 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089619 32 0.014
TC14947 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar... 30 0.088
BP054521 27 0.44
AV422441 27 0.44
TC13025 similar to UP|Q9EMA1 (Q9EMA1) Envelope glycoprotein (Fra... 27 0.57
TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogen... 27 0.57
TC17341 similar to GB|AAM65089.1|21593140|AY087547 N-myristoyl t... 27 0.74
TC17258 similar to UP|SSG1_PEA (Q43092) Granule-bound starch syn... 26 0.97
TC8390 similar to UP|ARG2_ARATH (Q9ZPF5) Probable arginase , pa... 26 0.97
BP035449 26 0.97
TC9157 26 1.3
TC17794 weakly similar to PIR|T04482|T04482 ribophorin I homolog... 26 1.3
TC13905 similar to UP|Q8H1U4 (Q8H1U4) APC5, partial (12%) 26 1.3
TC10174 26 1.3
BP034433 26 1.3
TC8955 weakly similar to UP|Q9FLU7 (Q9FLU7) Phloem-specific lect... 25 1.7
AV410595 25 1.7
AV424613 25 1.7
AV407407 25 1.7
TC8857 similar to UP|Q8LKG0 (Q8LKG0) Drm4, partial (84%) 25 1.7
>AU089619
Length = 375
Score = 32.3 bits (72), Expect = 0.014
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 70 RLWSSRDWNNKLHSFSRLFLHIRNLGLL 97
++W++RDWN K+ F+R F ++ LL
Sbjct: 122 KVWTTRDWNRKIPVFARFFEELKEKNLL 205
>TC14947 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;}, partial (26%)
Length = 728
Score = 29.6 bits (65), Expect = 0.088
Identities = 15/42 (35%), Positives = 20/42 (46%)
Frame = -1
Query: 30 QIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSHKKNNRL 71
Q+P + P PS P R +STC T P+H N +L
Sbjct: 206 QLPGSAAPPSEPSPPSARRDQSTCQTERT----PAHASNAKL 93
>BP054521
Length = 537
Score = 27.3 bits (59), Expect = 0.44
Identities = 12/43 (27%), Positives = 25/43 (57%), Gaps = 6/43 (13%)
Frame = +3
Query: 59 HLHLPSHKKNNRLWSSRD------WNNKLHSFSRLFLHIRNLG 95
H+ S K N++++ + N+KLH+F ++++HI +G
Sbjct: 78 HMKKESIIKTNQIYNFANSFFRFLMNHKLHNFKKVYIHINKVG 206
>AV422441
Length = 480
Score = 27.3 bits (59), Expect = 0.44
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +2
Query: 10 RKLSLVAIAIASLTLLILFLQIPNTRVPSEAP-SKPHLRFPKS 51
R+++L+ +LTLL+L L + + A S+PH RFP S
Sbjct: 236 RRINLLLCFCIALTLLLLLLLLAAANSSTTANRSRPHPRFPLS 364
>TC13025 similar to UP|Q9EMA1 (Q9EMA1) Envelope glycoprotein (Fragment),
partial (12%)
Length = 470
Score = 26.9 bits (58), Expect = 0.57
Identities = 16/43 (37%), Positives = 19/43 (43%)
Frame = -1
Query: 48 FPKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRLFLH 90
FP S+ F S+H HL N R LHS+S LH
Sbjct: 254 FPSSSSSFFSSHSHLTPPSPANPPHHHRHLT*PLHSYSVPSLH 126
>TC9650 similar to UP|O49485 (O49485) Phosphoglycerate dehydrogenase-like
protein , partial (47%)
Length = 1041
Score = 26.9 bits (58), Expect = 0.57
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 12 LSLVAIAIASLTLLILFLQIPNTRVPSEAPSKPHLRFPK 50
LSL I + TLL L P R P P +P LR P+
Sbjct: 69 LSLTFSLIKTPTLLRLLRLPPPPRPPFPPPRRPRLRLPR 185
>TC17341 similar to GB|AAM65089.1|21593140|AY087547 N-myristoyl transferase
{Arabidopsis thaliana;} , partial (42%)
Length = 724
Score = 26.6 bits (57), Expect = 0.74
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 38 SEAPSKPHLRFPKSTCDFTSTHLH 61
S A KPH R P+ C STH H
Sbjct: 477 SSAGDKPHHRSPQIPCHKWSTHKH 406
>TC17258 similar to UP|SSG1_PEA (Q43092) Granule-bound starch synthase I,
chloroplast precursor (GBSSI) , partial (4%)
Length = 334
Score = 26.2 bits (56), Expect = 0.97
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 37 PSEAPSKPHLRFPKSTCDFTSTHLH-LPSHKKN-NRLWSSR 75
PS PH+R ++TC STH H+++ N LW +
Sbjct: 30 PSTTSLSPHVRIARATC*EISTHRKPARGHRESPNSLWQQQ 152
>TC8390 similar to UP|ARG2_ARATH (Q9ZPF5) Probable arginase , partial
(91%)
Length = 1400
Score = 26.2 bits (56), Expect = 0.97
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 77 WNNKLHSFSRLFLHIRNLGLL 97
W+ LHSF L LH+ LG L
Sbjct: 287 WDTILHSFKGLHLHLLTLGKL 349
>BP035449
Length = 549
Score = 26.2 bits (56), Expect = 0.97
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = -1
Query: 60 LHLPSHKKNNRLWSSRDWNNKL 81
+H H+KN+ WS +W KL
Sbjct: 318 IH*DKHQKNSNFWSFMNWRLKL 253
>TC9157
Length = 621
Score = 25.8 bits (55), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +1
Query: 49 PKSTCDFTSTHLHLPSHKKNNRLWSSR 75
P S C T H HL K+ R+W+S+
Sbjct: 112 PLSICSSTFHHHHLEVCIKHQRMWNSK 192
>TC17794 weakly similar to PIR|T04482|T04482 ribophorin I homolog - barley
(fragment) {Hordeum vulgare;}, partial (7%)
Length = 573
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 38 SEAPSKPHLRFPKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRL-FLHIRNL 94
S + + P+ P+S+ TS HLHLP H+ + +R + + + +RL F H + +
Sbjct: 9 SSSSTAPNGTSPQSS---TSLHLHLPLHQSRKFIIFTRCSHRQCRTQNRLDFSHCKGV 173
>TC13905 similar to UP|Q8H1U4 (Q8H1U4) APC5, partial (12%)
Length = 733
Score = 25.8 bits (55), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = +3
Query: 60 LHLPSHKKNNRLWSSRDWNNKL 81
+H H+KN+ WS +W KL
Sbjct: 183 IH*DKHQKNSSFWSFMNWQLKL 248
>TC10174
Length = 1063
Score = 25.8 bits (55), Expect = 1.3
Identities = 17/51 (33%), Positives = 22/51 (42%), Gaps = 11/51 (21%)
Frame = -1
Query: 42 SKPHL----RFPKSTC-------DFTSTHLHLPSHKKNNRLWSSRDWNNKL 81
S PH R PKSTC F+ T HLP + ++ + W N L
Sbjct: 712 SSPHYTLQSRGPKSTCFPQHSTFQFSRTQQHLPVKETPSQGCQAPQWQNPL 560
>BP034433
Length = 490
Score = 25.8 bits (55), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 51 STCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSR 86
ST + T+T H HK+N +L + + +H+FSR
Sbjct: 439 STPNITTTS*HSALHKRNTKLTLAHLISIAVHAFSR 332
>TC8955 weakly similar to UP|Q9FLU7 (Q9FLU7) Phloem-specific lectin-like
protein, partial (12%)
Length = 693
Score = 25.4 bits (54), Expect = 1.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 49 PKSTCDFTSTHLHLP 63
P +T D T++HLHLP
Sbjct: 154 PVTTLDLTNSHLHLP 110
>AV410595
Length = 225
Score = 25.4 bits (54), Expect = 1.7
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -2
Query: 8 FLRKLSLVAIAIASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLPSHKK 67
F R + + + SLTLL L +Q ++ S P FP ST D TS+ H
Sbjct: 206 FPRPILFINFTLRSLTLLGLRVQTS*SKPIDTPLSSPSSEFP-STVDTTSS*ASKSRHSS 30
Query: 68 NNRL 71
++ L
Sbjct: 29 SSSL 18
>AV424613
Length = 268
Score = 25.4 bits (54), Expect = 1.7
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 8 FLRKLSLVAIAIASLTLLILFLQI---PNTRVP 37
F LS ++ ASL LL+L LQI PNT P
Sbjct: 15 FSSLLSNYLLSTASLLLLLLLLQIQPNPNTTAP 113
>AV407407
Length = 256
Score = 25.4 bits (54), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 13 SLVAIAIASLTLLILFLQIPNTRVPS 38
S V +IAS TLL LFL++P+ + S
Sbjct: 178 SAVCSSIASSTLLQLFLEMPHELIQS 255
>TC8857 similar to UP|Q8LKG0 (Q8LKG0) Drm4, partial (84%)
Length = 772
Score = 25.4 bits (54), Expect = 1.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 37 PSEAPSKPHLRFP 49
P +AP PHLRFP
Sbjct: 81 PRKAPKAPHLRFP 119
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,187,457
Number of Sequences: 28460
Number of extensions: 36981
Number of successful extensions: 303
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of query: 99
length of database: 4,897,600
effective HSP length: 75
effective length of query: 24
effective length of database: 2,763,100
effective search space: 66314400
effective search space used: 66314400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)
Medicago: description of AC139841.14