BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.10 - phase: 0
(213 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15772 UP|Q40218 (Q40218) RAB8D, complete 370 e-104
TC14195 UP|Q40215 (Q40215) RAB8A, complete 354 7e-99
TC8253 UP|Q40219 (Q40219) RAB8E, complete 350 8e-98
TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein... 345 3e-96
NP459466 RAB8C [Lotus japonicus] 345 3e-96
TC8227 UP|Q40203 (Q40203) RAB1C, complete 222 4e-59
TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete 221 6e-59
TC8930 UP|Q40204 (Q40204) RAB1D, complete 216 2e-57
TC12907 UP|Q40201 (Q40201) RAB1A, complete 214 7e-57
AU089325 192 3e-50
TC14872 UP|Q40208 (Q40208) RAB2A, complete 169 4e-43
TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete 157 2e-39
TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein ... 156 3e-39
TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Ra... 150 1e-37
TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete 150 2e-37
NP459482 RAB11J [Lotus japonicus] 149 4e-37
TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete 149 4e-37
TC16955 UP|Q40206 (Q40206) RAB1X, complete 149 5e-37
TC18671 UP|Q40198 (Q40198) RAB11H, complete 147 1e-36
TC11251 UP|R11E_LOTJA (Q40195) Ras-related protein Rab11E, complete 145 5e-36
>TC15772 UP|Q40218 (Q40218) RAB8D, complete
Length = 1139
Score = 370 bits (951), Expect = e-104
Identities = 184/197 (93%), Positives = 193/197 (97%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR+KLQIWDTAGQERF
Sbjct: 290 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERF 469
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 470 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 649
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD+KAEPTT+KINQ
Sbjct: 650 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDHKAEPTTLKINQ 829
Query: 197 DSATGSGQAAQKSACCG 213
DSA G+G+AA KS+CCG
Sbjct: 830 DSAAGAGEAANKSSCCG 880
>TC14195 UP|Q40215 (Q40215) RAB8A, complete
Length = 1171
Score = 354 bits (908), Expect = 7e-99
Identities = 181/198 (91%), Positives = 190/198 (95%), Gaps = 1/198 (0%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 254 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 433
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYDVTDEASFNNI+NWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 434 RTITTAYYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKR 613
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD++AEP TI+INQ
Sbjct: 614 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIQINQ 793
Query: 197 -DSATGSGQAAQKSACCG 213
D++ GQAAQKS CCG
Sbjct: 794 PDASASGGQAAQKS-CCG 844
>TC8253 UP|Q40219 (Q40219) RAB8E, complete
Length = 1106
Score = 350 bits (899), Expect = 8e-98
Identities = 178/198 (89%), Positives = 186/198 (93%), Gaps = 1/198 (0%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 234 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 413
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYDVTDE+SFNNI+NWI NIEQHASDNVNKILVGNKADMDESKR
Sbjct: 414 RTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDNVNKILVGNKADMDESKR 593
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-NKAEPTTIKIN 195
AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD +K EPT IKIN
Sbjct: 594 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSSKTEPTGIKIN 773
Query: 196 QDSATGSGQAAQKSACCG 213
+G+AAQKSACCG
Sbjct: 774 PQDKGSAGEAAQKSACCG 827
>TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein, complete
Length = 1109
Score = 345 bits (886), Expect = 3e-96
Identities = 174/198 (87%), Positives = 186/198 (93%), Gaps = 1/198 (0%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL IWDTAGQERF
Sbjct: 303 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLHIWDTAGQERF 482
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYY GAMGILLVYDVTDE+SFN+I+NWIR++E HASDNVNKILVGNKADMDESKR
Sbjct: 483 RTITTAYYLGAMGILLVYDVTDESSFNHIQNWIRHLEPHASDNVNKILVGNKADMDESKR 662
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
AVPTSKGQALADEYGIKFFETSAKTNLNV+EVFFSIARDIKQR+AD D+KAEP T+KINQ
Sbjct: 663 AVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDIKQRVADNDSKAEPQTLKINQ 842
Query: 197 -DSATGSGQAAQKSACCG 213
D GS QAAQKSACCG
Sbjct: 843 PDQGAGSAQAAQKSACCG 896
>NP459466 RAB8C [Lotus japonicus]
Length = 639
Score = 345 bits (885), Expect = 3e-96
Identities = 177/197 (89%), Positives = 182/197 (91%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER
Sbjct: 52 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERV 231
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGA GILLVYDVTDE+SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 232 RTITTAYYRGAKGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 411
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD+KAEP TIKINQ
Sbjct: 412 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPQTIKINQ 591
Query: 197 DSATGSGQAAQKSACCG 213
AAQ S CCG
Sbjct: 592 PDQPA---AAQNSTCCG 633
>TC8227 UP|Q40203 (Q40203) RAB1C, complete
Length = 1083
Score = 222 bits (565), Expect = 4e-59
Identities = 112/197 (56%), Positives = 144/197 (72%), Gaps = 1/197 (0%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 158 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 337
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++AS+NVNK+LVGNK D+ +K
Sbjct: 338 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK- 514
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-NKAEPTTIKIN 195
V +A ADE GI F ETSAK NVE+ F ++A +IK R+A N A P T++I
Sbjct: 515 VVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIR 694
Query: 196 QDSATGSGQAAQKSACC 212
QKS CC
Sbjct: 695 GQPVN------QKSGCC 727
>TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete
Length = 951
Score = 221 bits (564), Expect = 6e-59
Identities = 113/197 (57%), Positives = 143/197 (72%), Gaps = 1/197 (0%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E D K IKLQIWDTAGQERF
Sbjct: 122 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERF 301
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK+D+ + R
Sbjct: 302 RTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL-TANR 478
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-NKAEPTTIKIN 195
AV +A ADE GI F ETSAK NVE+ F ++A IK R+A N A P T+ I+
Sbjct: 479 AVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQPANNARPPTVNIS 658
Query: 196 QDSATGSGQAAQKSACC 212
Q S CC
Sbjct: 659 ------GKPVGQSSGCC 691
>TC8930 UP|Q40204 (Q40204) RAB1D, complete
Length = 943
Score = 216 bits (550), Expect = 2e-57
Identities = 112/199 (56%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRF D S+ S+I+TIG+DFKIRT+E D K IKLQIWDTAGQERF
Sbjct: 120 LLLIGDSGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERF 299
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK D+ + R
Sbjct: 300 RTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL-TANR 476
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDNKAEPTTIKI 194
AV + AD GI F ETSAK NVE+ F +++ IK R+A + N P T++I
Sbjct: 477 AVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANNGRPPTVQI 656
Query: 195 NQDSATGSGQ-AAQKSACC 212
GQ QKS CC
Sbjct: 657 R-------GQPVGQKSGCC 692
>TC12907 UP|Q40201 (Q40201) RAB1A, complete
Length = 869
Score = 214 bits (546), Expect = 7e-57
Identities = 107/197 (54%), Positives = 146/197 (73%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ + VGKSCLLLRF+D S+ S+I+TIG+DFKIRT+EL GK IKLQIWDTAGQERF
Sbjct: 143 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTAGQERF 322
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVT+ SFNN++ W+ I+++A+D+V K+LVGNK+D+ E+K
Sbjct: 323 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVENK- 499
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
V T +A ADE GI F ETSAK ++NVE+ F ++A +IK+++ ++PT K +
Sbjct: 500 VVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMG-----SQPTGSKSAE 664
Query: 197 DSATGSGQAAQKSACCG 213
QKS CCG
Sbjct: 665 TVQMKGQPIPQKSNCCG 715
>AU089325
Length = 757
Score = 192 bits (489), Expect = 3e-50
Identities = 93/144 (64%), Positives = 117/144 (80%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E D K IKLQIWDTAGQERF
Sbjct: 78 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERF 257
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK D+ + R
Sbjct: 258 RTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL-TANR 434
Query: 137 AVPTSKGQALADEYGIKFFETSAK 160
AV + AD+ GI F ETSAK
Sbjct: 435 AVSYDTAKEFADQIGIPFMETSAK 506
>TC14872 UP|Q40208 (Q40208) RAB2A, complete
Length = 1125
Score = 169 bits (427), Expect = 4e-43
Identities = 91/196 (46%), Positives = 120/196 (60%), Gaps = 7/196 (3%)
Frame = +3
Query: 24 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 83
GVGKSCLLL+F+D F TIG++F R I +D K IKLQIWDTAGQE FR+IT +Y
Sbjct: 252 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 431
Query: 84 YRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 143
YRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GNK D+ +RAV T +G
Sbjct: 432 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEG 608
Query: 144 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDNKAEPTTIKINQDSATG 201
+ A E+G+ F E SAKT NVEE F A I +++ D D E IK+ G
Sbjct: 609 EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPG 788
Query: 202 -----SGQAAQKSACC 212
G +A CC
Sbjct: 789 PSGGRDGPSASAGGCC 836
>TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete
Length = 1193
Score = 157 bits (396), Expect = 2e-39
Identities = 86/207 (41%), Positives = 126/207 (60%), Gaps = 11/207 (5%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
I+L+ +GVGKS +L RF+ F +TIG++F RT++++GK +K QIWDTAGQER+
Sbjct: 279 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 458
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYD+T +F+N++ W+R + HA N+ ++ GNK+D++ R
Sbjct: 459 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LR 635
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKA---- 187
AV G ALA++ G+ F ETSA N+E+ F +I +I K+ LA + A
Sbjct: 636 AVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASV 815
Query: 188 --EPTTIKINQDSATGSGQAAQKSACC 212
+ TTI + S K CC
Sbjct: 816 PGQGTTINVADTSGN------TKKGCC 878
>TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 860
Score = 156 bits (394), Expect = 3e-39
Identities = 82/202 (40%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ +GVGKS LL RF+ F +TIG++F RT+E++G+ +K QIWDTAGQER+
Sbjct: 125 VVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLEVEGRMVKAQIWDTAGQERY 304
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYDVT SF N+ W++ + HA N+ +L+GNK D+ + R
Sbjct: 305 RAITSAYYRGALGALLVYDVTKPTSFENVTRWLKELRDHADANIVIMLIGNKTDL-KHLR 481
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD---TDNKAEPTTIK 193
V T Q+ A++ G+ F ETSA NV++ F +I I + ++ + + +P+
Sbjct: 482 GVATEDAQSYAEKEGLSFIETSALEATNVDKAFQTILAQIYRIISKKSLSSSSTDPSAPN 661
Query: 194 INQDSA---TGSGQAAQKSACC 212
I Q + G Q +CC
Sbjct: 662 IKQGNTITIQGGLQPNTSKSCC 727
>TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Rab11B,
partial (89%)
Length = 973
Score = 150 bits (380), Expect = 1e-37
Identities = 78/198 (39%), Positives = 115/198 (57%), Gaps = 2/198 (1%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ +GVGKS LL RF+ F +TIG++F R++ + K +K QIWDTAGQER+
Sbjct: 207 LVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVRIHDKTVKAQIWDTAGQERY 386
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G L+VYDVT + +F N++ W++ + H N+ +LVGNKAD+ R
Sbjct: 387 RAITSAYYRGAVGALIVYDVTRQVTFENVQRWLKELRDHTDANIVIMLVGNKADL-RHLR 563
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA--DTDNKAEPTTIKI 194
AVPT + A A+ F ETSA +LNV+ F + +I ++ +P +
Sbjct: 564 AVPTEEATAFAERENTYFMETSALESLNVDNAFIXVLSEIYNVVSRKTLXKGNDPGALPQ 743
Query: 195 NQDSATGSGQAAQKSACC 212
Q G + CC
Sbjct: 744 GQTINLGDVSXXKXPGCC 797
>TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete
Length = 984
Score = 150 bits (378), Expect = 2e-37
Identities = 78/205 (38%), Positives = 125/205 (60%), Gaps = 9/205 (4%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ + VGKS +L RF+ F+ +TIG++F+ RT+ +D K +K QIWDTAGQER+
Sbjct: 119 VVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERY 298
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R +T+AYYRGA+G +LVYD+T +F++I W+ + HA N+ IL+GNK D+ ++R
Sbjct: 299 RAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDL-VNQR 475
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
VPT + A++ G+ F ETSA NVE F ++ +I K+ LA +++ +
Sbjct: 476 DVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNS 655
Query: 192 IKINQDSATGSGQA----AQKSACC 212
++ G A A+++ CC
Sbjct: 656 ASLSGQKIIIPGPAQEIPAKRNMCC 730
>NP459482 RAB11J [Lotus japonicus]
Length = 672
Score = 149 bits (376), Expect = 4e-37
Identities = 74/160 (46%), Positives = 113/160 (70%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
I+L+ + VGKS LL RF+ F + +TIG++F+ + I+++GK IK QIWDTAGQERF
Sbjct: 49 IVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIDINGKEIKAQIWDTAGQERF 228
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R +T+AYYRGA+G L+VYD++ +F++I W+ + H+ NV ILVGNK+D+ ++ R
Sbjct: 229 RAVTSAYYRGAVGALVVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDA-R 405
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 176
V T++G+ALA+ G+ F ETSA + NV F ++ ++I
Sbjct: 406 EVTTAEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEI 525
>TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete
Length = 1302
Score = 149 bits (376), Expect = 4e-37
Identities = 82/207 (39%), Positives = 120/207 (57%), Gaps = 11/207 (5%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ +GVGKS LL RF+ F +TIG++F +T+ +D K +K QIWDTAGQER+
Sbjct: 293 LVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERY 472
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYDVT A+F N W++ + H N+ +L+GNK+D+
Sbjct: 473 RAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDL-RHLV 649
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVE----EVFFSIARDIKQRLADTDNKAEPT-- 190
AVPT G++ A+ + F ETSA NVE EV I R + +R + + +
Sbjct: 650 AVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGL 829
Query: 191 -----TIKINQDSATGSGQAAQKSACC 212
TI + +DS+ ++ CC
Sbjct: 830 PSKGQTINVKEDSS-----VLKRFGCC 895
>TC16955 UP|Q40206 (Q40206) RAB1X, complete
Length = 1104
Score = 149 bits (375), Expect = 5e-37
Identities = 90/198 (45%), Positives = 122/198 (61%), Gaps = 2/198 (1%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
ILL+ +GVGKS LL+ F S TIG+DFKI+ + + GKR+KL +WDTAGQERF
Sbjct: 134 ILLIGDSGVGKSSLLVSFISSSVEDQS-PTIGVDFKIKMLTVGGKRLKLTLWDTAGQERF 310
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRN-WIRNIEQHASD-NVNKILVGNKADMDES 134
RT+T++YYRGA GI+LVYDVT +F N+ W + +E ++++ + K+LVGNK D D +
Sbjct: 311 RTLTSSYYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSNNQDCVKMLVGNKVDRD-A 487
Query: 135 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKI 194
RAV +G ALA E G E SAKT NVE+ F +A I + A + + T +K
Sbjct: 488 ARAVSREEGLALAKELGCLLIECSAKTRENVEQCFEELALKIME--APSLLEEGSTAVKR 661
Query: 195 NQDSATGSGQAAQKSACC 212
N QA+Q CC
Sbjct: 662 NILKQKQEPQASQHGGCC 715
>TC18671 UP|Q40198 (Q40198) RAB11H, complete
Length = 1181
Score = 147 bits (372), Expect = 1e-36
Identities = 84/204 (41%), Positives = 115/204 (56%), Gaps = 8/204 (3%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ +GVGKS LL RF+ F+ +TIG++F R+I +D K +K QIWDTAGQER+
Sbjct: 249 VVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERY 428
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYDVT +F N+ W++ + H N+ +LVGNKAD+ +
Sbjct: 429 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDTNIVVMLVGNKADLRHLRA 608
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
L +E F ETSA +LNVE F + I K+ L D +PT
Sbjct: 609 VSTEDSSGFLLNERTHFFMETSALESLNVENAFTEVLTQIYRVVSKKALEIGD---DPTA 779
Query: 192 IKINQDSATGSG---QAAQKSACC 212
+ Q GS +KS CC
Sbjct: 780 LPKGQTINVGSRDDVSPVKKSGCC 851
>TC11251 UP|R11E_LOTJA (Q40195) Ras-related protein Rab11E, complete
Length = 950
Score = 145 bits (366), Expect = 5e-36
Identities = 79/194 (40%), Positives = 117/194 (59%), Gaps = 11/194 (5%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ +GVGKS LL RF+ F +TIG++F +++ +DGK IK QIWDTAGQER+
Sbjct: 107 LVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERY 286
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYDVT +F W++ + H N+ +L+GNK+D+
Sbjct: 287 RAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDL-RHLV 463
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVE----EVFFSIARDIKQRLADTDNK------ 186
V T G+A A++ + F ETSA NVE EV I R + +R + ++
Sbjct: 464 TVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVV 643
Query: 187 -AEPTTIKINQDSA 199
++ TI +N+DS+
Sbjct: 644 PSQGQTINVNEDSS 685
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,102,697
Number of Sequences: 28460
Number of extensions: 33087
Number of successful extensions: 252
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of query: 213
length of database: 4,897,600
effective HSP length: 86
effective length of query: 127
effective length of database: 2,450,040
effective search space: 311155080
effective search space used: 311155080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC139841.10