BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139748.7 + phase: 0 /pseudo
(144 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 28 0.61
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 28 0.61
TC14404 27 1.0
AV415539 27 1.0
TC17766 27 1.0
TC14405 27 1.0
AV780663 27 1.0
TC16119 similar to UP|Q8GTM7 (Q8GTM7) Putataive glucan 1,3-beta-... 27 1.4
TC12398 similar to UP|Q9ZUI4 (Q9ZUI4) T2K10.14 protein (At1g6008... 27 1.4
AV428779 26 2.3
TC18837 weakly similar to UP|Q39856 (Q39856) Epoxide hydrolase ... 26 3.0
TC10531 similar to UP|Q96UV7 (Q96UV7) Endo-1,4-beta-xylanase , ... 26 3.0
BP079489 25 4.0
TC8088 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like arabinogalac... 25 4.0
BP071245 25 4.0
TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein (AT5g64... 25 4.0
AV417046 25 4.0
AV412850 25 4.0
AV423085 25 4.0
AW719918 25 5.2
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 28.1 bits (61), Expect = 0.61
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 19 R*RWKRC*YNRSVRKL*RVKV--RYRSPCHERRRPRWW-TRPRVPLSCASGI 67
R RW+R * R R+ R R+R+ RRR RW T+PR+ C G+
Sbjct: 270 RGRWRRR*GRRGWRRRRR*VCCRRFRNRSRRRRR*RWR*TQPRLTSRCLGGL 115
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 28.1 bits (61), Expect = 0.61
Identities = 24/59 (40%), Positives = 26/59 (43%), Gaps = 17/59 (28%)
Frame = -2
Query: 17 YER*RWKRC*YNR------------SVRKL*RVKVRYRSPCHE-----RRRPRWWTRPR 58
Y R RW RC* R S R+ R + R RS C RR PRWWTR R
Sbjct: 737 YRRWRW-RC*CRRRSSGRRSTGRYWSSRR--RRQYRRRSSCRRGFAGGRR*PRWWTRLR 570
>TC14404
Length = 794
Score = 27.3 bits (59), Expect = 1.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 117 WSYLWSSTKSLVIWRTLSCV 136
W Y+W S S V+W +LSC+
Sbjct: 465 W*YIWKSL-SFVLWSSLSCI 521
>AV415539
Length = 419
Score = 27.3 bits (59), Expect = 1.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 117 WSYLWSSTKSLVIWRTLSCVLRMRVL 142
WSYL+ ++ L + RT+ C+LR R L
Sbjct: 319 WSYLYYLSRFLHMARTVFCILRRRRL 396
>TC17766
Length = 503
Score = 27.3 bits (59), Expect = 1.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 116 SWSYLWSSTKSLVIWRTLSC 135
SWSY ++ +S+V+W+ C
Sbjct: 415 SWSYRYNILRSIVVWQNFRC 356
>TC14405
Length = 585
Score = 27.3 bits (59), Expect = 1.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 117 WSYLWSSTKSLVIWRTLSCV 136
W Y+W S S V+W +LSC+
Sbjct: 356 W*YIWKSL-SFVLWSSLSCI 412
>AV780663
Length = 568
Score = 27.3 bits (59), Expect = 1.0
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 40 RYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRH 80
R+R R RPRW RP+ P S R +Q H
Sbjct: 105 RFRRRRRVRHRPRWIPRPQPPSQRGSDRSCRSRQDHPHGPH 227
>TC16119 similar to UP|Q8GTM7 (Q8GTM7) Putataive glucan 1,3-beta-glucosidase
precursor, partial (59%)
Length = 1489
Score = 26.9 bits (58), Expect = 1.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 89 CI*QSLWLIGKS*SNNFTHSRW*SQRLSWSYLWSSTKSLVIWRTLSCVLRMRV 141
C * S WL+ *SN+ T L W +L + + L++ R S L R+
Sbjct: 705 CC*NSRWLVDSK*SNSTT-------ALCWGFLEHTRQCLLVGRASS*TLFSRI 842
>TC12398 similar to UP|Q9ZUI4 (Q9ZUI4) T2K10.14 protein (At1g60080), partial
(70%)
Length = 823
Score = 26.9 bits (58), Expect = 1.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 116 SWSYLWSSTKSLVIWRTLSCV 136
S+ Y+WS+ SL WR SC+
Sbjct: 544 SFEYIWSTYISLQAWRASSCL 606
>AV428779
Length = 381
Score = 26.2 bits (56), Expect = 2.3
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = -1
Query: 19 R*RWKRC*YNRSVRKL*RVKV--RYRSPCHERRRPRWW-TRPRVPLSCASGI 67
R RW+R R R+ R R+R+ RRR RW T+PR+ C G+
Sbjct: 267 RGRWRRKSDRRGWRRRRR*VCCRRFRNRSRRRRR*RWK*TQPRLTSRCLGGL 112
>TC18837 weakly similar to UP|Q39856 (Q39856) Epoxide hydrolase , partial
(89%)
Length = 1100
Score = 25.8 bits (55), Expect = 3.0
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +3
Query: 42 RSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQ 84
R+P R RPR RPR L C G+ FR Q HR GQ
Sbjct: 243 RTPRCSRCRPRLSRRPR--LGCCHGLVFRLVQA*T--CHRLGQ 359
>TC10531 similar to UP|Q96UV7 (Q96UV7) Endo-1,4-beta-xylanase , partial
(6%)
Length = 387
Score = 25.8 bits (55), Expect = 3.0
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 57 PRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QSLWLI 97
P L+ A+ I ++ +PRH G++ C+ ++ W++
Sbjct: 65 PPPQLNPAAAINIPPPAEQPQPRHHKGRTCCYCLFRTFWIL 187
>BP079489
Length = 418
Score = 25.4 bits (54), Expect = 4.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 42 RSPCHERRRPRWWTRP 57
R P H R RPR W RP
Sbjct: 295 RRPLHLRLRPRAWPRP 342
>TC8088 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (69%)
Length = 1527
Score = 25.4 bits (54), Expect = 4.0
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -3
Query: 45 CHERRRPRWWTR 56
CH RRR RWW +
Sbjct: 142 CHWRRRLRWWRK 107
>BP071245
Length = 552
Score = 25.4 bits (54), Expect = 4.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 5 ILRSLPEITILDYER*RWKRC*YNRSVRKL*RVKVRYR 42
ILR L E I W RC*+++ R++ RV+VR +
Sbjct: 272 ILRQLSEFLI*------WMRC*FHQMQREVGRVRVRVK 367
>TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein
(AT5g64260/MSJ1_10), partial (84%)
Length = 1244
Score = 25.4 bits (54), Expect = 4.0
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +3
Query: 40 RYRSPCHERRRPRWWTR 56
R+ S C RR RWW R
Sbjct: 615 RFTSRCMAHRRRRWWRR 665
>AV417046
Length = 413
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 49 RRPRWWTRPRVPLSCASGIKFREKQQRNEP 78
RR RW R R PLS +S FR+ + P
Sbjct: 181 RRRRWRLRKRNPLSISSPT*FRKPPRLTRP 270
>AV412850
Length = 294
Score = 25.4 bits (54), Expect = 4.0
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2
Query: 43 SPCHERRRPR 52
+PCHERR+PR
Sbjct: 101 TPCHERRKPR 130
>AV423085
Length = 411
Score = 25.4 bits (54), Expect = 4.0
Identities = 12/36 (33%), Positives = 17/36 (46%), Gaps = 7/36 (19%)
Frame = +1
Query: 107 HSRW*SQRLSWS-------YLWSSTKSLVIWRTLSC 135
H+ * +R W Y WS++ S V WR + C
Sbjct: 178 HTGS*DRRFPWQTPGLLVLYYWSASGSTVTWRPMVC 285
>AW719918
Length = 506
Score = 25.0 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 12/24 (49%)
Frame = -2
Query: 43 SPCHERRRPRWWTRPRVPLSCASG 66
+P RRR RWW P VP G
Sbjct: 211 TPISTRRRARWW--PSVPSKAEGG 146
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.350 0.149 0.585
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,626,241
Number of Sequences: 28460
Number of extensions: 65040
Number of successful extensions: 842
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of query: 144
length of database: 4,897,600
effective HSP length: 82
effective length of query: 62
effective length of database: 2,563,880
effective search space: 158960560
effective search space used: 158960560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC139748.7