TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139748.4 + phase: 0 /pseudo
         (36 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP044361                                                               38  4e-04
TC18458 homologue to UP|AMP1_ARATH (Q9SLN5) Probable methionine ...    25  3.6
TC15094 similar to UP|Q8LA02 (Q8LA02) Contains similarity to RNA...    25  4.7
TC13110 similar to GB|CAC05445.1|9955561|ATT19L5 senescence-asso...    24  6.1

>BP044361 
          Length = 542

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 14/24 (58%), Positives = 19/24 (78%)
 Frame = +1

Query: 4   PNRIKNNPKYYPWFKNCIGAIDGL 27
           P  I N+ +YYP+FK+CIG IDG+
Sbjct: 391 PPEILNSARYYPYFKDCIGVIDGM 462


>TC18458 homologue to UP|AMP1_ARATH (Q9SLN5) Probable methionine
           aminopeptidase 1  (MetAP 1) (MAP 1) (Peptidase M 1) ,
           partial (23%)
          Length = 599

 Score = 25.0 bits (53), Expect = 3.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 3   LPNRIKNNPKYYPWFKNCIG 22
           L  R++ +PK +PW K+ +G
Sbjct: 236 LTGRLQTSPKVFPWVKS*LG 295


>TC15094 similar to UP|Q8LA02 (Q8LA02) Contains similarity to RNA-binding
           protein from Arabidopsis thaliana gi|2129727 and
           contains RNA recognition PF|00076 domain, partial (21%)
          Length = 599

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 5   NRIKNNPKYYPWFKNC 20
           N+++N  K Y WF NC
Sbjct: 555 NKMENYYKVYNWFNNC 508


>TC13110 similar to GB|CAC05445.1|9955561|ATT19L5 senescence-associated
           protein (SAG29) {Arabidopsis thaliana;} , partial (21%)
          Length = 605

 Score = 24.3 bits (51), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 7   IKNNPKYYPWFKNCI 21
           + N   YYPWF +CI
Sbjct: 488 VTNPYYYYPWFVSCI 532


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.146    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 895,061
Number of Sequences: 28460
Number of extensions: 7378
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 36
length of database: 4,897,600
effective HSP length: 12
effective length of query: 24
effective length of database: 4,556,080
effective search space: 109345920
effective search space used: 109345920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)