BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.6 + phase: 0 /pseudo
(1770 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%) 38 0.012
TC19039 similar to UP|Q8L7W5 (Q8L7W5) AT4g12110/F16J13_180, part... 35 0.13
AW719831 34 0.18
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 34 0.23
TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, ... 33 0.39
BP039014 33 0.51
AV426647 33 0.51
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 33 0.51
TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%) 32 0.67
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 32 0.87
TC14757 similar to UP|O04361 (O04361) Prohibitin, complete 32 1.1
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 31 1.5
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1... 31 1.5
TC16223 weakly similar to PIR|T04762|T04762 chitinase homolog T1... 31 1.9
AV409919 31 1.9
TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase is... 31 1.9
TC14964 weakly similar to UP|SOX_ARATH (Q9SJA7) Potential sarcos... 31 1.9
BP044109 31 1.9
TC14745 similar to UP|Q9LFB5 (Q9LFB5) Anthranilate N-benzoyltran... 30 2.5
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 30 2.5
>TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%)
Length = 1240
Score = 38.1 bits (87), Expect = 0.012
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Frame = +1
Query: 2 IPSTTILPPTTIPTKTTATTPSS----------GSSQSAESKATI*PLANDLWSIAPFFT 51
+P+ TI PP+ T T+ TP+S ++ + S +T P A+ + P
Sbjct: 115 LPAPTI*PPSNPKTSTSTPTPASPPASTSPLTPPTTSPSSSTSTAAPSASAPLTTTPTTA 294
Query: 52 CTESGPNNTTSSHS-----------RPSPTLVPSGPSLYLPSRGTR 86
+ + P T S S PSPT P PS LP+ TR
Sbjct: 295 TSTTSPRRQTPSSSPSTTASPRSTPSPSPTTTPGKPSSGLPASTTR 432
>TC19039 similar to UP|Q8L7W5 (Q8L7W5) AT4g12110/F16J13_180, partial (61%)
Length = 763
Score = 34.7 bits (78), Expect = 0.13
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Frame = +2
Query: 15 TKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGP-----NNTTSSHSRPS- 68
T +TATT SS SS S S + P ++ + +P T T S P + T SS +RPS
Sbjct: 254 TSSTATTFSSSSSSSPSSLS---PSSSSRSNASPPSTITRSNPRFASPSVTCSSATRPSC 424
Query: 69 ----PTLVPSGPSLYLPSR 83
+ VPS S LPSR
Sbjct: 425 ACSSSSSVPSNSSPILPSR 481
>AW719831
Length = 436
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/80 (35%), Positives = 35/80 (43%)
Frame = +1
Query: 3 PSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTS 62
P+TT PP+T P P + SS A + A P AP T + + P S
Sbjct: 187 PTTTTTPPSTNPHLLLPPPPHARSSSCAATAAKSSP--------APTTTTSPTSPATPRS 342
Query: 63 SHSRPSPTLVPSGPSLYLPS 82
S S S + PS PS LPS
Sbjct: 343 SPSTASSSSPPSSPS-SLPS 399
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 33.9 bits (76), Expect = 0.23
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 3 PSTTILPPTT-IPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTT 61
P+TT PTT P+ + T+PSS S+ S K ++ P + S A T + GP +++
Sbjct: 188 PATTTPSPTTPTPSNPSCTSPSSSSTTSPSLKTSVKPSVS---SPASPPTSSPLGP-SSS 355
Query: 62 SSHSRPSPTLVPSGPSL 78
S+ S+ S SG SL
Sbjct: 356 SAPSKASSVTASSGSSL 406
>TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, P1 clone:
MZE19, partial (30%)
Length = 805
Score = 33.1 bits (74), Expect = 0.39
Identities = 23/81 (28%), Positives = 35/81 (42%)
Frame = +3
Query: 3 PSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTS 62
PS + T + T+T+PSS A S A W FTC+ S P + +S
Sbjct: 387 PSPSAASSTPLTPTPTSTSPSSTLQLPATSSAATSATKPSAW-----FTCSASCPASNSS 551
Query: 63 SHSRPSPTLVPSGPSLYLPSR 83
+ + S T +PS + + R
Sbjct: 552 TMTSSSTTPIPSFSNTFTSRR 614
>BP039014
Length = 566
Score = 32.7 bits (73), Expect = 0.51
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 1205 MGFDI*WSC*-CLWKWNWCG 1223
+GF W C C W+W+WCG
Sbjct: 172 LGFSFFWGCYGCCWRWDWCG 113
>AV426647
Length = 430
Score = 32.7 bits (73), Expect = 0.51
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 1205 MGFDI*WSC*-CLWKWNWCG 1223
+GF W C C W+W+WCG
Sbjct: 189 LGFSFFWGCYGCCWRWDWCG 130
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 32.7 bits (73), Expect = 0.51
Identities = 32/90 (35%), Positives = 39/90 (42%), Gaps = 4/90 (4%)
Frame = +3
Query: 3 PSTTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTS 62
PS T LPPT P PS S S S +T P + S P T +S PN
Sbjct: 177 PSAT-LPPTPSP-------PSPRSDPSPLSTSTTNPTTSS--STTPKTTTNKSNPNTARL 326
Query: 63 SHSRP--SPTLV--PSGPSLYLPSRGTRPR 88
SH+ P SP L+ S PS+ P + R
Sbjct: 327 SHAAP*GSPPLLTTTSPPSVTAPRTSSASR 416
>TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%)
Length = 799
Score = 32.3 bits (72), Expect = 0.67
Identities = 27/81 (33%), Positives = 31/81 (37%), Gaps = 4/81 (4%)
Frame = +1
Query: 3 PSTTILPPTTIPTKT--TATTPSSGSSQSAESKATI*PLAN--DLWSIAPFFTCTESGPN 58
PS + PP P T AT S SAES P A S P T T S N
Sbjct: 310 PSISTSPPALTPASTPVPATASPPSQSPSAESPGASLPAATTPSPSSTTPRSTQTPSSNN 489
Query: 59 NTTSSHSRPSPTLVPSGPSLY 79
TT + + + PSG Y
Sbjct: 490 ETTPAQRNGASSATPSGLWFY 552
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 32.0 bits (71), Expect = 0.87
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +1
Query: 4 STTILPPTTIPTKTTATTPS--SGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTT 61
STT PP+ PTK T P+ S S++S S A+ P S PN +T
Sbjct: 127 STTTPPPS--PTKVTENPPTAPSTSTKSPTSSASEEP----------------SPPNPST 252
Query: 62 SSHSRP--SPTLVPSGPSLYLPSRGTRP 87
S+ +P SPT P+ PS PS T+P
Sbjct: 253 STTQQPKHSPTSPPASPSPSPPS--TKP 330
>TC14757 similar to UP|O04361 (O04361) Prohibitin, complete
Length = 1141
Score = 31.6 bits (70), Expect = 1.1
Identities = 29/81 (35%), Positives = 36/81 (43%), Gaps = 6/81 (7%)
Frame = +1
Query: 3 PSTTILPPTTIPTKTTATTPS------SGSSQSAESKATI*PLANDLWSIAPFFTCTESG 56
PS + LPP P T +TPS S S+ SA S T P A + S + G
Sbjct: 88 PSASALPP---PPSTPPSTPSMEASAPSSSTDSAASSTT--PSAKEPIS-------SSHG 231
Query: 57 PNNTTSSHSRPSPTLVPSGPS 77
N TSS S +PT P P+
Sbjct: 232 SRNPTSSTSALAPTPSPPSPA 294
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 31.2 bits (69), Expect = 1.5
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 3 PSTTI-LPPTTIPTKTTATTPSSGS------SQSAESKATI*PLANDLWSIAPFFTCTES 55
PST PP++ P T +TP + S S SA+S A+ PLA+ + P T +
Sbjct: 130 PSTAARTPPSSAPPATPKSTPPTSSPPAIHVSLSAKS-ASKPPLASHARPMPP----TSA 294
Query: 56 GPNNTTSSHSRPSPTLVPSGPSL 78
P TS+ PSP PSL
Sbjct: 295 SPATMTSTPPTPSPPATNVPPSL 363
>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
(Forkhead-related protein FKHL2) (Transcription factor
BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
Length = 1032
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 21 TPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTSSHSRPSP-TLVPSGP 76
TPSS SS S P W I CT PN TT+SHS P+P +L P P
Sbjct: 14 TPSSLSSSS--------PRQQWRWRI-----CTG*PPNRTTASHSSPNP*SLAPPPP 145
>TC16223 weakly similar to PIR|T04762|T04762 chitinase homolog T16H5.170 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(35%)
Length = 570
Score = 30.8 bits (68), Expect = 1.9
Identities = 19/67 (28%), Positives = 25/67 (36%), Gaps = 8/67 (11%)
Frame = +1
Query: 1217 WKWNWCGTHYP*GYSHPFYCKVTF*LHKQHRR--------VRSLHHGYRGSHRFEDQENC 1268
WKW++ H P + P C * QH + +LH G F +
Sbjct: 115 WKWSFSFRH*PFSFHPPILCIC*P*SSNQHTHHFTCKRSSILNLHSNTPGQKPFSENPFI 294
Query: 1269 HLWRFRS 1275
H WR RS
Sbjct: 295 HRWRRRS 315
>AV409919
Length = 423
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/74 (33%), Positives = 35/74 (46%), Gaps = 6/74 (8%)
Frame = +3
Query: 3 PSTTILPPTTIPTKTTATTPSSGSSQSAESKA-----TI*PLANDLWSIAPFFTCTESGP 57
P T+ LPP +P+ T +PSS S ++ S A PL+ P + S P
Sbjct: 129 PRTSKLPPPPLPSPTLYFSPSSSPSSTSSSTAGARRFGTPPLSTSSPPPRPPPSSPSSPP 308
Query: 58 NNTTS-SHSRPSPT 70
+T+S S S P PT
Sbjct: 309 PSTSSASSSAPPPT 350
>TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase isolog,
25331-24357 (At1g11090), partial (18%)
Length = 552
Score = 30.8 bits (68), Expect = 1.9
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Frame = +3
Query: 9 PPTTIPTKTTATTPSSGSSQSAE-------------SKATI*PLANDLWSIAPFFTCTES 55
PP++ PT TA TP+ S +SA S AT P A+ S +
Sbjct: 201 PPSS*PT-ATAPTPAGSSRRSASTSPPGATPSSPPTSSATAAPTASAATSATSTASPPPR 377
Query: 56 GPNNTTSSHSRPSPTLVPS 74
P+++TS+ + P+P PS
Sbjct: 378 SPSSSTSAAASPTPPFRPS 434
>TC14964 weakly similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine oxidase
, partial (33%)
Length = 612
Score = 30.8 bits (68), Expect = 1.9
Identities = 27/83 (32%), Positives = 36/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 4 STTILPPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTSS 63
STT+ PPT P + + TPS+ +S S+ T + P + T+S
Sbjct: 142 STTVAPPTVNPAPSASPTPSTTTSPSSSPPTTY---------------GNKPRPKSATTS 276
Query: 64 HSRPSPTLV---PSGPSLYLPSR 83
SR S TL P PS L SR
Sbjct: 277 CSRRS-TLTWPPPMTPSFTLSSR 342
>BP044109
Length = 497
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 9 PPTTIPTKTTATTPSSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTTSSHSRPS 68
PP+T TK + + P + SS S T+ P ++++ S PS
Sbjct: 245 PPSTFATKPSTSPPETPSSSSHGPAPTL------------------PSPPSSSTPTSTPS 370
Query: 69 PTLVPSGPSLYLPSRGT 85
P P+G +L P R T
Sbjct: 371 PPSPPNGSTLPSPPRAT 421
Score = 30.0 bits (66), Expect = 3.3
Identities = 29/88 (32%), Positives = 38/88 (42%), Gaps = 9/88 (10%)
Frame = +2
Query: 9 PPTTIPTKTTATTPSSGSSQSAES----KATI*PLANDLWSIAP----FFTCTESGPNNT 60
PP P TTPS S+ +++S + P + S P F T + P T
Sbjct: 113 PPPPPPPNKNKTTPSHASNATSKSTPRTQTPTTPPPSPTSSPKPPPSTFATKPSTSPPET 292
Query: 61 TSSHSR-PSPTLVPSGPSLYLPSRGTRP 87
SS S P+PTL PS PS P+ P
Sbjct: 293 PSSSSHGPAPTL-PSPPSSSTPTSTPSP 373
>TC14745 similar to UP|Q9LFB5 (Q9LFB5) Anthranilate
N-benzoyltransferase-like protein (AT5g01210/F7J8_190),
partial (37%)
Length = 842
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 49 FFTCTESGPNNTTSSHSRPSPTLVPSGPSLYLPSRGTRPRC 89
FFT T+ PN SH+ +P + PS +P R PRC
Sbjct: 553 FFTVTK--PNTRFPSHTA*TPCRFQAPPSFQVPKRPQDPRC 437
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +2
Query: 3 PSTTILPPTTIPTKTTATTP-SSGSSQSAESKATI*PLANDLWSIAPFFTCTESGPNNTT 61
PST PP+T + + + P S+ QS + +T P + S P+ ++
Sbjct: 251 PSTPSSPPSTTTSPSPTSPPRSTNGPQSPSAPSTTPPWTTSSQNTHQSPPSRTSSPSTSS 430
Query: 62 SSHSRP-----SPTLVPSGPSLYLP 81
S+ S P SPT PS P P
Sbjct: 431 STTSAPRSSTRSPTAPPSPPQCTKP 505
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.359 0.158 0.619
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,241,295
Number of Sequences: 28460
Number of extensions: 612072
Number of successful extensions: 7950
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 5727
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 6500
length of query: 1770
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1667
effective length of database: 1,966,220
effective search space: 3277688740
effective search space used: 3277688740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC139747.6