BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.5 + phase: 0 /pseudo
(1608 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 199 1e-55
BP084332 147 2e-35
AV780009 124 2e-28
BP052632 98 1e-20
BP075943 74 1e-13
AU088980 72 9e-13
AV427921 71 2e-12
BP057233 69 4e-12
BP043850 69 6e-12
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 64 1e-10
BP063694 62 9e-10
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 61 1e-09
AV424544 61 2e-09
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 60 3e-09
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 57 3e-08
AV766088 57 3e-08
BP054819 53 4e-07
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 52 6e-07
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 49 6e-06
AV766665 48 1e-05
>BP066094
Length = 532
Score = 199 bits (507), Expect(3) = 1e-55
Identities = 92/149 (61%), Positives = 125/149 (83%)
Frame = +2
Query: 1198 ARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTK 1257
++ EAIR+L++++ + +I L QM+VKSAFLNG+++EEVYV QPPG +++ +H+FKL K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1258 ALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKI 1317
+LYGLKQAPRAWY+RLS+FL+EN RGK+DTTLF KT+ D+LIVQ+YVDDIIFG+
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1318 KMCEEFSNLMQSEFEMSMMGELGFFLGLQ 1346
+C+EFS +MQ+EFEM MMGEL +FLG+Q
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 33.9 bits (76), Expect(3) = 1e-55
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 1182 YNQQEGIDYDETFAPVAR 1199
Y+QQ GIDY ETFAPVAR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
Score = 23.1 bits (48), Expect(3) = 1e-55
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1172 RNKARLVAQG 1181
RNKARLVAQG
Sbjct: 10 RNKARLVAQG 39
>BP084332
Length = 368
Score = 147 bits (370), Expect = 2e-35
Identities = 67/100 (67%), Positives = 87/100 (87%)
Frame = +2
Query: 1502 QNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHS 1561
Q+TI LST EAEY+SAA C +Q+LW+++QLEDY + +++PIYCDNT+AI+LSKNPI HS
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 211
Query: 1562 RSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
R+KHIE+K+HFIRD+VQK + L FVDT++Q ADIFTKPL
Sbjct: 212 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPL 331
>AV780009
Length = 529
Score = 124 bits (310), Expect = 2e-28
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Frame = -1
Query: 1439 AVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWS 1498
A R+ RY+ G GL++ S L AY D+D+AG R+S +G FLG +LI W
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1499 CRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRY-TSVPIYCDNTSAINLSKNP 1557
+KQ T+ S++EAEY + A+ ++ W+ + L VP++CDN SA++++ NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1558 IQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKP 1600
H R+KHIE+ H +R +Q I L + T +QLADIFTKP
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKP 38
>BP052632
Length = 489
Score = 97.8 bits (242), Expect = 1e-20
Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 10/111 (9%)
Frame = -3
Query: 951 KTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNL 1010
KTPYELW+ +P++SYFH FGC +ILN + +GKFD K DK I LGYS+ SK Y V+N
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308
Query: 1011 KTQTVEISMHIIFD----------EYDEHSKPKENEDTEAPTLQNVPVQNT 1051
+TQ VE S+++ FD E D + ++D E PT + P + +
Sbjct: 307 RTQVVEESINVKFDD*SIEATYRLEKDFLNLDLSDQDEEVPTNEGQPSETS 155
>BP075943
Length = 547
Score = 74.3 bits (181), Expect = 1e-13
Identities = 44/163 (26%), Positives = 77/163 (46%), Gaps = 5/163 (3%)
Frame = -3
Query: 1305 VYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKD 1364
+YVDD++ + + + + +F + +GE +FLGL+I + ++GI ++Q KY
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1365 ILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEK-----EYRGMIGSLLYLTASRPDIV 1419
++ + P S + G + YR ++G LLYL +RPDI
Sbjct: 335 LIS----DSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDIT 168
Query: 1420 FAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSS 1462
FAV ++F + + H + +YL G+ GL+Y SS
Sbjct: 167 FAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>AU088980
Length = 360
Score = 71.6 bits (174), Expect = 9e-13
Identities = 33/115 (28%), Positives = 58/115 (49%)
Frame = +2
Query: 901 NGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNI 960
N +VERK+R + + R ++ S + W A+ + Y++N + + + PY+ N
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 961 KPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTV 1015
P++ +FG CY K DP++ K +FLG+ T + GY V +L T +
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPTTXI 346
>AV427921
Length = 284
Score = 70.9 bits (172), Expect = 2e-12
Identities = 36/83 (43%), Positives = 47/83 (56%)
Frame = +1
Query: 893 SCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKT 952
+ A TPQQNGV ERKNRT+ M R++L S + F EA+ S +ILNR V N
Sbjct: 10 TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMM 189
Query: 953 PYELWKNIKPSISYFHIFGCYCY 975
P E W +P++ +F I C Y
Sbjct: 190 PEEAWSGRQPAVDHFRISRCLAY 258
>BP057233
Length = 473
Score = 69.3 bits (168), Expect = 4e-12
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = -2
Query: 1543 IYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
++CDN SA L+ NP+ H+RSKHIEI H+IRD V + + +++V T +Q+AD TKPL
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKPL 269
>BP043850
Length = 515
Score = 68.9 bits (167), Expect = 6e-12
Identities = 33/83 (39%), Positives = 51/83 (60%), Gaps = 1/83 (1%)
Frame = -1
Query: 1522 SQILWVRNQLEDYS-LRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKK 1580
S+I+W+R L + L+ P++ DNTSAI ++ NP+ H ++HIE+ H +R+ ++
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1581 NIALSFVDTENQLADIFTKPLVR 1603
I L V T Q+ADI TK L R
Sbjct: 335 VITLPHVSTSVQIADILTKSLTR 267
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 64.3 bits (155), Expect = 1e-10
Identities = 31/77 (40%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Frame = +1
Query: 1526 WVRNQLEDYSLRYTSVP-IYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIAL 1584
W+ L+D + + +YCDN SA +++ NP+ H R+KHIEI H +R+ +QK I L
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1585 SFVDTENQLADIFTKPL 1601
+ + LADI+TK L
Sbjct: 184 LPISSSEPLADIYTKAL 234
>BP063694
Length = 511
Score = 61.6 bits (148), Expect = 9e-10
Identities = 44/126 (34%), Positives = 60/126 (46%), Gaps = 7/126 (5%)
Frame = -2
Query: 739 IWHKRAGHISMKTIAKLSQ---LDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFIS 795
+WH R GH++ I +L + LD+ LPK IC C + KS K + F
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCLDVSSILPK------PIC--CTSCQMAKS--KRLVFHD 211
Query: 796 TQKP----LELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNF 851
K L+L+H DL P AS+ G Y + VDDFSRFTW LK K + + F
Sbjct: 210 NNKRASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRF 31
Query: 852 CKRVQN 857
++N
Sbjct: 30 KVFMEN 13
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/149 (26%), Positives = 75/149 (49%), Gaps = 13/149 (8%)
Frame = +2
Query: 1275 TFLIENGFSRGKID-TTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEM 1333
+F++ G++R D T ++ + D +I+ +YVDD++ +E + EF+M
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 1334 SMMGELGFFLGLQI--KQHSNGIFISQEKYIKDILKKYKMNEAKIMSTP----------M 1381
+G LG+QI + I++SQ+ Y++ +L+++ M + +STP M
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 1382 HPSSSLDKDESGKSISEKEYRGMIGSLLY 1410
PSS ++ E +S Y +GSL+Y
Sbjct: 368 IPSSEAERME----MSRVPYASAVGSLMY 442
>AV424544
Length = 276
Score = 60.8 bits (146), Expect = 2e-09
Identities = 29/90 (32%), Positives = 51/90 (56%)
Frame = +3
Query: 1272 RLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEF 1331
+LS++L G+ + D +LF K + ++ VYVDD+I + + N + +F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1332 EMSMMGELGFFLGLQIKQHSNGIFISQEKY 1361
+ +G L +FLGL++ + S G+F+SQ KY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 60.1 bits (144), Expect = 3e-09
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = -1
Query: 1358 QEKYIKDILKKYKMNEAKIMSTPMHPSS-SLDKDESGKSISEKEYRGMIGSLLYLTASRP 1416
Q+ Y+ DILKK+KM +K +ST + + GK + Y+ +IGS+ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1417 DIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLW 1456
DIV VGL +RF + H +R RY+ GT G++
Sbjct: 559 DIVCGVGLRSRFME-P*DCH*QGAQRSLRYIKGTLKDGIF 443
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 56.6 bits (135), Expect = 3e-08
Identities = 28/77 (36%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Frame = +1
Query: 1526 WVRNQLEDYSLRYTSVPI-YCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIAL 1584
W+ L+D + + S + YCD+ SA +++ N + H R+KH++I H +R+ +Q K L
Sbjct: 13 WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKLFHL 192
Query: 1585 SFVDTENQLADIFTKPL 1601
+ + +Q ADI TKPL
Sbjct: 193 LPISSVDQTADILTKPL 243
>AV766088
Length = 501
Score = 56.6 bits (135), Expect = 3e-08
Identities = 38/111 (34%), Positives = 59/111 (52%), Gaps = 4/111 (3%)
Frame = -3
Query: 739 IWHKRAGHISMKTIAKLSQLDLVRGLPKISFEK---DKICEACVKGKQVKSSFKTIEFIS 795
+WH R GH S S L +R IS+E +CE+CV GK V+ F + +
Sbjct: 307 LWHSRLGHPSS------SALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNV- 149
Query: 796 TQKPLELLHIDLF-APVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESF 845
T P ++LH DL+ +PV +++ G R+ + +DDF+ F W L +K + F
Sbjct: 148 TVMPFDILHSDLWTSPVLSSA--GHRFYVLFLDDFTDFLWTFPLSNKSQVF 2
>BP054819
Length = 537
Score = 52.8 bits (125), Expect = 4e-07
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Frame = -3
Query: 4 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKE-------GAVK 56
EGG NRPP+ DG+NY + K +M FL+S DN W I G PT E K
Sbjct: 301 EGG*VNRPPILDGTNYDY*KVRMTAFLKSIDNKTWKAIVKGWKHPTKVEVEGTSTTVVEK 122
Query: 57 AKSAWSTDEKAQVLLNSKA 75
+ W++ E L NSKA
Sbjct: 121 PEEEWTSVEDEAALGNSKA 65
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 52.4 bits (124), Expect = 6e-07
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Frame = +3
Query: 1523 QILWVRNQLEDYSLRYTS---VPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQK 1579
+ LW+ L D LR S V IYCDN SA++L+ N + H R+++IEI H + V
Sbjct: 21 EALWLTYALAD--LRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLF 194
Query: 1580 KNIALSFVDTENQLADIFTKPL 1601
+ L V + +Q+AD+FTK +
Sbjct: 195 GILHLLHVPSSDQVADVFTKTI 260
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 48.9 bits (115), Expect = 6e-06
Identities = 34/118 (28%), Positives = 58/118 (48%), Gaps = 3/118 (2%)
Frame = +3
Query: 1489 FLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYC--- 1545
F G A + W R Q + LST EAE+++A C ++LW++N L+ + + S PI C
Sbjct: 12 FAGGA-VAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQ--NAWFHSHPILCCIV 182
Query: 1546 DNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVR 1603
+ L++ + + +RD + K + L + T++ AD+ TK L R
Sbjct: 183 ITKALFTLARILLFIQDPSTLMFVIIGLRDVLNSKLLELEKIHTDDDGADMMTKSLPR 356
>AV766665
Length = 601
Score = 47.8 bits (112), Expect = 1e-05
Identities = 28/76 (36%), Positives = 38/76 (49%)
Frame = +3
Query: 1438 TAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGW 1497
T RIF YL + G ++K + + ADY G V+R ST G FL L+ W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1498 SCRKQNTIELSTTEAE 1513
++QN I S+ EAE
Sbjct: 540 RSKQQNIIARSSGEAE 587
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,217,652
Number of Sequences: 28460
Number of extensions: 345214
Number of successful extensions: 1888
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1880
length of query: 1608
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1505
effective length of database: 1,966,220
effective search space: 2959161100
effective search space used: 2959161100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC139747.5